Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,573 A→G T129T (ACA→ACG)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,5730AG98.9% 288.9 / NA 89T129T (ACA→ACG) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (52/36);  minor base C (1/0);  total (53/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCAT‑‑‑‑‑TCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATT  >  CP006881/3723437‑3723705
                                                                                                                                             |                                                                                                                                    
ccggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACggg                                                                                                                                    <  5:393311/137‑1 (MQ=255)
 cggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACggga                                                                                                                                   >  7:3981/2‑138 (MQ=255)
 cggCAACACCTTTTATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACggga                                                                                                                                   >  1:342313/2‑138 (MQ=255)
          cttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          <  8:3981/138‑1 (MQ=255)
             ttATTTCACCTATCCCGCGCACCGGAAAAAATTCAGCTGCCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        <  2:349270/138‑1 (MQ=255)
             ttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        <  4:159934/138‑1 (MQ=255)
             ttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGGCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        <  1:367980/138‑1 (MQ=255)
                tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCt                                                                                                                    <  1:180707/139‑1 (MQ=255)
                tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCt                                                                                                                    <  5:421773/139‑1 (MQ=255)
                    acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTTGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          <  5:375514/126‑1 (MQ=255)
                    acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          >  6:375514/4‑129 (MQ=255)
                    acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTg                                                                                                                >  5:377687/4‑139 (MQ=255)
                    acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACCGGACGTTTTGAGGAGCCTTCtt                                                                                                                >  3:63659/4‑138 (MQ=255)
                     cctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGt                                                                                                               <  5:81552/137‑1 (MQ=255)
                         taCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCAt                                                                                                           >  4:55376/1‑139 (MQ=255)
                           ccGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTc                                                                                                         <  7:203793/139‑1 (MQ=255)
                              cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                                      >  6:424047/1‑139 (MQ=255)
                              cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                                      >  3:352411/1‑139 (MQ=255)
                              cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                                      >  8:305156/1‑139 (MQ=255)
                              cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTAAATCGGCGCCATTCTGTTAGCCAT‑‑‑‑‑CCTGATCAGAGCGACGGCACTTTTTGACGAGCCTTCTGTTCATTACtt                                                                                                      >  6:48832/1‑139 (MQ=255)
                                cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTACTCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                                    >  6:18166/1‑139 (MQ=255)
                                cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                                    >  1:411756/1‑139 (MQ=255)
                                cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                                    >  1:31686/1‑139 (MQ=255)
                                    ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAt                                                                                                <  6:432757/137‑1 (MQ=255)
                                    ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGAGCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAt                                                                                                <  1:43225/137‑1 (MQ=255)
                                              cagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCAATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      <  2:342313/137‑1 (MQ=255)
                                               agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      <  2:31686/137‑1 (MQ=255)
                                               agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCAGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      <  1:108979/137‑1 (MQ=255)
                                                    gcgcGACACCCTATACTTGTGGATGTCAAGCTATGCCAGCAATTTAATCGGCGCCATTCTGTTTGCAAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGca                                                                                 >  5:6169/1‑138 (MQ=255)
                                                               tatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgcc                                                                     >  4:297035/3‑139 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCCTGTCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgc                                                                   >  4:343327/1‑139 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          >  4:363790/1‑79 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          <  3:363790/79‑1 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  6:149164/1‑139 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  5:265763/1‑139 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  1:57707/1‑139 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  5:360944/1‑139 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  4:29872/1‑139 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  7:254586/1‑139 (MQ=255)
                                                                      gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCGGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  3:148498/1‑139 (MQ=255)
                                                                      ggagATGTCAAGCTATGCCGGCAATTTAATCGGCGCCTTTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgccgg                                                                <  8:254586/134‑3 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACgggac                                                                                                                                  >  7:329364/1‑68 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACgggac                                                                                                                                  <  8:329364/70‑3 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        <  4:261438/80‑1 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        >  3:261438/1‑80 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                                                  <  5:351177/102‑1 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                                                  >  6:351177/1‑102 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                                             >  5:184337/1‑139 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                                             >  4:280961/1‑139 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                                             >  7:393048/1‑139 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                                             >  7:214929/1‑139 (MQ=255)
                                                                       tgGATGTCAAGCTATGCCGGCAATATAATCGGAGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCATCGCTAAGGTACTTTTTGAGGAGCCTACTGTTCATTACTTTTTGATTCATTTGGAAGAGCACAAAATGGAgccgccgccta                                                             >  8:62414/1‑134 (MQ=255)
                                                                       tgGATGTCAAGCTATCCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑ACTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGACCACAAAATGGAGCCGCCGGCtt                                                             >  5:13240/1‑139 (MQ=255)
                                                                         gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTga                                                                                                                           <  1:142090/75‑1 (MQ=255)
                                                                         gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTga                                                                                                                           >  2:142090/1‑75 (MQ=255)
                                                                         gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      <  3:148964/112‑1 (MQ=255)
                                                                         gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      >  4:148964/1‑112 (MQ=255)
                                                                         gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                                 >  4:108495/1‑117 (MQ=255)
                                                                         gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                                 <  3:108495/117‑1 (MQ=255)
                                                                         gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                                           >  5:151933/1‑139 (MQ=255)
                                                                         gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                                           >  7:77555/1‑139 (MQ=255)
                                                                         gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCGTcc                                                           >  3:267139/1‑139 (MQ=255)
                                                                             tCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CATGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGaat                                                       <  7:305156/139‑2 (MQ=255)
                                                                              cAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTGCCGaatt                                                      >  2:147440/1‑137 (MQ=255)
                                                                              cAAGCTATGCCGGCAATTTAATCGGCGCCATTCAGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          >  4:353539/1‑71 (MQ=255)
                                                                              cAAGCTATGCCGGCAATTTAATCGGCGCCATTCAGTTTGCCAT‑‑‑‑‑CATGATCAGCGCGACGGGACTTTTTgag                                                                                                                          <  3:353539/71‑1 (MQ=255)
                                                                                    aTGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCTGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                                >  4:284862/1‑139 (MQ=255)
                                                                                     tGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                                <  3:55376/138‑1 (MQ=255)
                                                                                      gCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                                >  8:376780/1‑137 (MQ=255)
                                                                                      gCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                                >  3:351032/1‑137 (MQ=255)
                                                                                       ccGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCa                                              <  6:184337/138‑1 (MQ=255)
                                                                                          gCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag                                           >  4:226915/1‑138 (MQ=255)
                                                                                           cAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgga                                         <  2:57707/139‑2 (MQ=255)
                                                                                           cAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgg                                          >  4:360245/1‑138 (MQ=255)
                                                                                              tttaagcGGCGCCATTCTGTGTCCCAG‑‑‑‑‑CCGGACCCGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATCCATTGGCCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATg                                      <  6:129006/133‑1 (MQ=255)
                                                                                                  aTCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCtg                                   <  8:214929/138‑1 (MQ=255)
                                                                                                            ttCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTTGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCt                        >  5:122145/1‑139 (MQ=255)
                                                                                                                 tttGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtgt                   >  1:34123/1‑139 (MQ=255)
                                                                                                                    gCCAT‑‑‑‑‑CCTGTTCAGCGCGCCGGGACTTTTTGTGGAGCGTTCTGTTCATTCCTTTTTGATTCATTTGGCAGACCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGcc                <  5:48832/139‑1 (MQ=255)
                                                                                                                    gCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCCGAGGAATGCTGTGCAATTGGCTTGTGTGcc                <  6:377687/139‑1 (MQ=255)
                                                                                                                    gCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGCATGCTGTGCAATTGGCTTGTGTGcc                >  2:89402/1‑139 (MQ=255)
                                                                                                                    gCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGcc                >  3:248779/1‑139 (MQ=255)
                                                                                                                               cTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGcc           <  4:248779/138‑1 (MQ=255)
                                                                                                                                  agcAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt       <  5:132661/137‑1 (MQ=255)
                                                                                                                                  aTCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGCGCACAAAATGGAGCCGCCGGCTTCCGAATTGGTTTTAAGAGGAATGCTGTGCAATTGGCTTGTGTGGCTCGCCtttt       >  3:261258/1‑139 (MQ=255)
                                                                                                                                  aTCAGCGCGACGGGACTTTTTGAGGAGCCTACTGTTCATTCCTTTTTCATTCAATTGGCAGAGCACAAAATGGAGCCGCCGGCATCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt       >  6:138456/1‑139 (MQ=255)
                                                                                                                                     aGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGCCCACAAAAGGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCttttt      <  4:352411/137‑1 (MQ=255)
                                                                                                                                       cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                                 <  2:259690/60‑1 (MQ=255)
                                                                                                                                       cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                                 >  1:259690/1‑60 (MQ=255)
                                                                                                                                       cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCt                                    <  6:436651/105‑1 (MQ=255)
                                                                                                                                       cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCt                                    >  5:436651/1‑105 (MQ=255)
                                                                                                                                       cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt       >  3:165091/1‑134 (MQ=255)
                                                                                                                                       cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt       <  4:165091/134‑1 (MQ=255)
                                                                                                                                       cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCAtt  >  4:106820/1‑139 (MQ=255)
                                                                                                                                             |                                                                                                                                    
CTGGCAACACTTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCAT‑‑‑‑‑TCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATT  >  CP006881/3723437‑3723705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A