Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,576 G→A G130G (GGG→GGA)  U712_19195 → putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,5760GA100.0% 275.8 / NA 89G130G (GGG→GGA) U712_19195putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (53/36);  total (53/36)

TTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCAT‑‑‑‑‑TCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATT  >  CP006881/3723447‑3723705
                                                                                                                                      |                                                                                                                                 
cttttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          <  8:3981/138‑1 (MQ=255)
   ttATTTCACCTATCCCGCGCACCGGAAAAAATTCAGCTGCCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        <  2:349270/138‑1 (MQ=255)
   ttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        <  4:159934/138‑1 (MQ=255)
   ttATTTCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGGCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        <  1:367980/138‑1 (MQ=255)
      tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCt                                                                                                                    <  1:180707/139‑1 (MQ=255)
      tttCACCTATACCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCt                                                                                                                    <  5:421773/139‑1 (MQ=255)
          acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTTGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          <  5:375514/126‑1 (MQ=255)
          acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          >  6:375514/4‑129 (MQ=255)
          acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTg                                                                                                                >  5:377687/4‑139 (MQ=255)
          acctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACCGGACGTTTTGAGGAGCCTTCtt                                                                                                                >  3:63659/4‑138 (MQ=255)
           cctataCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGt                                                                                                               <  5:81552/137‑1 (MQ=255)
               taCCGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCAt                                                                                                           >  4:55376/1‑139 (MQ=255)
                 ccGCGCTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTc                                                                                                         <  7:203793/139‑1 (MQ=255)
                    cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                                      >  3:352411/1‑139 (MQ=255)
                    cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                                      >  8:305156/1‑139 (MQ=255)
                    cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtt                                                                                                      >  6:424047/1‑139 (MQ=255)
                    cgcTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTAAATCGGCGCCATTCTGTTAGCCAT‑‑‑‑‑CCTGATCAGAGCGACGGCACTTTTTGACGAGCCTTCTGTTCATTACtt                                                                                                      >  6:48832/1‑139 (MQ=255)
                      cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTACTCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                                    >  6:18166/1‑139 (MQ=255)
                      cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                                    >  1:411756/1‑139 (MQ=255)
                      cTCCGGAAAAAAATCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCtttt                                                                                                    >  1:31686/1‑139 (MQ=255)
                          ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAt                                                                                                <  6:432757/137‑1 (MQ=255)
                          ggaaaaaaaTCAGCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGAGCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGAt                                                                                                <  1:43225/137‑1 (MQ=255)
                                    cagCTGGCGCGACACCCTATACTTGTGGATGTCAAGCAATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      <  2:342313/137‑1 (MQ=255)
                                     agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      <  2:31686/137‑1 (MQ=255)
                                     agCTGGCGCGACACCCTATACTTGTGGATGTCAAGCTATGCAGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      <  1:108979/137‑1 (MQ=255)
                                          gcgcGACACCCTATACTTGTGGATGTCAAGCTATGCCAGCAATTTAATCGGCGCCATTCTGTTTGCAAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGca                                                                                 >  5:6169/1‑138 (MQ=255)
                                                     tatACTTGTGGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgcc                                                                     >  4:297035/3‑139 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCATCCCTGTCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgc                                                                   >  4:343327/1‑139 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          >  4:363790/1‑79 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          <  3:363790/79‑1 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  6:149164/1‑139 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  1:57707/1‑139 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  4:29872/1‑139 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  5:265763/1‑139 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  5:360944/1‑139 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  7:254586/1‑139 (MQ=255)
                                                            gtgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCGGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCt                                                              >  3:148498/1‑139 (MQ=255)
                                                            ggagATGTCAAGCTATGCCGGCAATTTAATCGGCGCCTTTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAgccgccgg                                                                <  8:254586/134‑3 (MQ=255)
                                                             tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        <  4:261438/80‑1 (MQ=255)
                                                             tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgagga                                                                                                                        >  3:261438/1‑80 (MQ=255)
                                                             tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                                                  <  5:351177/102‑1 (MQ=255)
                                                             tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTg                                                                                                  >  6:351177/1‑102 (MQ=255)
                                                             tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                                             >  7:214929/1‑139 (MQ=255)
                                                             tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                                             >  4:280961/1‑139 (MQ=255)
                                                             tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                                             >  5:184337/1‑139 (MQ=255)
                                                             tgGATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCtt                                                             >  7:393048/1‑139 (MQ=255)
                                                             tgGATGTCAAGCTATGCCGGCAATATAATCGGAGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCATCGCTAAGGTACTTTTTGAGGAGCCTACTGTTCATTACTTTTTGATTCATTTGGAAGAGCACAAAATGGAgccgccgccta                                                             >  8:62414/1‑134 (MQ=255)
                                                             tgGATGTCAAGCTATCCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑ACTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGACCACAAAATGGAGCCGCCGGCtt                                                             >  5:13240/1‑139 (MQ=255)
                                                               gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTga                                                                                                                           <  1:142090/75‑1 (MQ=255)
                                                               gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTga                                                                                                                           >  2:142090/1‑75 (MQ=255)
                                                               gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      <  3:148964/112‑1 (MQ=255)
                                                               gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCa                                                                                      >  4:148964/1‑112 (MQ=255)
                                                               gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                                 <  3:108495/117‑1 (MQ=255)
                                                               gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                                 >  4:108495/1‑117 (MQ=255)
                                                               gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                                           >  7:77555/1‑139 (MQ=255)
                                                               gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTcc                                                           >  5:151933/1‑139 (MQ=255)
                                                               gATGTCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCGTcc                                                           >  3:267139/1‑139 (MQ=255)
                                                                   tCAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CATGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGaat                                                       <  7:305156/139‑2 (MQ=255)
                                                                    cAAGCTATGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTGCCGaatt                                                      >  2:147440/1‑137 (MQ=255)
                                                                    cAAGCTATGCCGGCAATTTAATCGGCGCCATTCAGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTgag                                                                                                                          >  4:353539/1‑71 (MQ=255)
                                                                    cAAGCTATGCCGGCAATTTAATCGGCGCCATTCAGTTTGCCAT‑‑‑‑‑CATGATCAGCGCGACGGGACTTTTTgag                                                                                                                          <  3:353539/71‑1 (MQ=255)
                                                                          aTGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCTGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                                >  4:284862/1‑139 (MQ=255)
                                                                           tGCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                                <  3:55376/138‑1 (MQ=255)
                                                                            gCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                                >  8:376780/1‑137 (MQ=255)
                                                                            gCCGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGttttt                                                >  3:351032/1‑137 (MQ=255)
                                                                             ccGGCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCa                                              <  6:184337/138‑1 (MQ=255)
                                                                                gCAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTAATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCagag                                           >  4:226915/1‑138 (MQ=255)
                                                                                 cAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgga                                         <  2:57707/139‑2 (MQ=255)
                                                                                 cAATTTAATCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAgg                                          >  4:360245/1‑138 (MQ=255)
                                                                                    tttaagcGGCGCCATTCTGTGTCCCAG‑‑‑‑‑CCGGACCCGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATCCATTGGCCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATg                                      <  6:129006/133‑1 (MQ=255)
                                                                                        aTCGGCGCCATTCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCtg                                   <  8:214929/138‑1 (MQ=255)
                                                                                                  ttCTGTTTGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTTGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCt                        >  5:122145/1‑139 (MQ=255)
                                                                                                       tttGCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTtgtgt                   >  1:34123/1‑139 (MQ=255)
                                                                                                          gCCAT‑‑‑‑‑CCTGTTCAGCGCGCCGGGACTTTTTGTGGAGCGTTCTGTTCATTCCTTTTTGATTCATTTGGCAGACCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGcc                <  5:48832/139‑1 (MQ=255)
                                                                                                          gCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCCGAGGAATGCTGTGCAATTGGCTTGTGTGcc                <  6:377687/139‑1 (MQ=255)
                                                                                                          gCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGCATGCTGTGCAATTGGCTTGTGTGcc                >  2:89402/1‑139 (MQ=255)
                                                                                                          gCCAT‑‑‑‑‑CCTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGcc                >  3:248779/1‑139 (MQ=255)
                                                                                                                     cTGATCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGcc           <  4:248779/138‑1 (MQ=255)
                                                                                                                        agcAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt       <  5:132661/137‑1 (MQ=255)
                                                                                                                        aTCAGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGCGCACAAAATGGAGCCGCCGGCTTCCGAATTGGTTTTAAGAGGAATGCTGTGCAATTGGCTTGTGTGGCTCGCCtttt       >  3:261258/1‑139 (MQ=255)
                                                                                                                        aTCAGCGCGACGGGACTTTTTGAGGAGCCTACTGTTCATTCCTTTTTCATTCAATTGGCAGAGCACAAAATGGAGCCGCCGGCATCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt       >  6:138456/1‑139 (MQ=255)
                                                                                                                           aGCGCGACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGCCCACAAAAGGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCttttt      <  4:352411/137‑1 (MQ=255)
                                                                                                                             cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                                 <  2:259690/60‑1 (MQ=255)
                                                                                                                             cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGca                                                                                 >  1:259690/1‑60 (MQ=255)
                                                                                                                             cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCt                                    >  5:436651/1‑105 (MQ=255)
                                                                                                                             cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCt                                    <  6:436651/105‑1 (MQ=255)
                                                                                                                             cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt       >  3:165091/1‑134 (MQ=255)
                                                                                                                             cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCtttt       <  4:165091/134‑1 (MQ=255)
                                                                                                                             cgcgACGGGACTTTTTGAGGAGCCTTCTGTTCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCAtt  >  4:106820/1‑139 (MQ=255)
                                                                                                                                      |                                                                                                                                 
TTTTTATTTCACTTATACCGCGCTCCGAAAAAAAATTCGCTGGCGAGACACCCTGTACCTGTGGATGTCAAGCTATGCCGGCAATTTGATCGGCGCCATTCTATTTGCCAT‑‑‑‑‑TCTGATCAGCGCGACAGGGCTTTTTGAGGAGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATT  >  CP006881/3723447‑3723705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A