Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F56 I20 R2 1958 92.1 3575798 91.1% 3257551 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 4,032,044 T→G K139Q (AAG→CAG)  U712_20825 ← Membrane protein oxaA 1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068814,032,0440TG100.0% 361.7 / NA 111K139Q (AAG→CAG) U712_20825Membrane protein oxaA 1
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (71/40);  total (71/40)

Only 100 of 111 total aligned reads displayed.

ATGTAGCGACACCGGCAACGATAGGAAGAATATAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTTGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCTTTAAGCTTTTGCATTTC  >  CP006881/4031909‑4032176
                                                                                                                                       |                                                                                                                                    
     gCGACACCGGCAACGATAGGAAGAATATAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCaaaa                                                                                                                              >  1:139559/1‑139 (MQ=255)
           ccGGCAACGATAGGAAGAATATAGTAAGGAGCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGa                                                                                                                        <  3:29350/139‑1 (MQ=255)
              gCAACGATAGGAAGAATATAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGAGCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGaaa                                                                                                                      >  8:416519/1‑138 (MQ=255)
                        gaagaaTATAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           <  4:441585/139‑1 (MQ=255)
                        gaagaaTATAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           <  7:197670/139‑1 (MQ=255)
                        gaagaaTATAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           <  6:170817/139‑1 (MQ=255)
                        gaagaaTATAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCAGCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           <  5:413034/139‑1 (MQ=255)
                         aagaaTATAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           <  2:316953/138‑1 (MQ=255)
                             atatAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGAt                                                                                                      >  2:17368/1‑139 (MQ=255)
                             atatAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGAt                                                                                                      >  8:201413/1‑139 (MQ=255)
                             atatAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGAt                                                                                                      >  4:420207/1‑139 (MQ=255)
                              tataGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGAtt                                                                                                     >  2:438048/1‑139 (MQ=255)
                               ataGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGAtt                                                                                                     >  6:204711/1‑138 (MQ=255)
                                   tAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           <  3:297233/128‑1 (MQ=255)
                                   tAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           <  3:184072/128‑1 (MQ=255)
                                   tAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           >  4:297233/1‑128 (MQ=255)
                                   tAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGAtt                                                                                                     <  2:5493/134‑1 (MQ=255)
                                   tAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGAtt                                                                                                     >  1:5493/1‑134 (MQ=255)
                                   tAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGacac                                                                                                >  5:28911/1‑139 (MQ=255)
                                   tAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGacac                                                                                                >  4:189122/1‑139 (MQ=255)
                                   tAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGacac                                                                                                >  7:346667/1‑139 (MQ=255)
                                     aGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCa                                                                                              >  8:169800/1‑139 (MQ=255)
                                      ggATCTTTTTCTCCTAAGTCAAACCATAATAAGCTATGATCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGACTCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGTATTGACACCAt                                                                                             >  6:37845/1‑139 (MQ=255)
                                      ggATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAAGTAAAATCGGCATCTGGATCTAAATCGGGAAACATCCCGCCAATGGATTGACCCCAt                                                                                             >  8:255783/1‑139 (MQ=255)
                                        aTCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGAt                                                                                                      <  5:116815/128‑1 (MQ=255)
                                        aTCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGAt                                                                                                      >  6:116815/1‑128 (MQ=255)
                                        aTCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGc                                                                                           >  8:33101/1‑139 (MQ=255)
                                        aTCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGc                                                                                           >  7:134087/1‑139 (MQ=255)
                                        aTCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGc                                                                                           >  5:377491/1‑139 (MQ=255)
                                        aTCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAAGCGGCATCTGGATCAAAATCTGGAAACTTCCCGCCAATGGATTGACACCATGc                                                                                           >  2:200145/1‑139 (MQ=255)
                                        aTCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGATCTGAAATCGAATGGGTTCTCATGATCGCATGATAGAATCCAAATAAAATCGGAATCTGCATCAAAATCGGGAAACATCCAGCAAATGGATTGACACCATg                                                                                            >  4:350724/1‑138 (MQ=255)
                                            ttttCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCtttt                                                                                       >  7:379030/1‑139 (MQ=255)
                                             tttCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCttt                                                                                        <  7:201413/137‑1 (MQ=255)
                                             tttCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCttt                                                                                        <  1:17368/137‑1 (MQ=255)
                                             tttCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCttt                                                                                        <  5:278535/137‑1 (MQ=255)
                                             tttCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTg                                                                                      >  6:34160/1‑139 (MQ=255)
                                                  ccTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAAt                                                                                  >  3:190038/1‑138 (MQ=255)
                                                   cTAAGTCACACCATAAGAAGCTATGCTCTGAAATAGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGaa                                                                                   <  7:184350/136‑1 (MQ=255)
                                                        tCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCa                                                                           <  3:257190/139‑1 (MQ=255)
                                                          aaaCCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCAtt                                                                         <  6:377491/139‑1 (MQ=255)
                                                             ccATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGtt                                                                      <  8:258461/139‑1 (MQ=255)
                                                             ccATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGtt                                                                      >  5:256480/1‑139 (MQ=255)
                                                                tAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTcc                                                                   >  2:82543/1‑139 (MQ=255)
                                                                 aagaagCTATGCTCTGCAATCGCCTGGGTTCTCATGATCGCATGATAGAAGCCCATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAAGGGATTGACACCATGCTTTTGGAATAAAGCGCTTGTTTCCt                                                                  >  5:382096/1‑139 (MQ=255)
                                                                  agaagCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGAGACCATGCttt                                                                                        <  2:263822/116‑1 (MQ=255)
                                                                  agaagCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCttt                                                                                        >  1:263822/1‑116 (MQ=255)
                                                                      gCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCttt                                                                                        <  1:167391/112‑1 (MQ=255)
                                                                      gCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCttt                                                                                        >  2:167391/1‑112 (MQ=255)
                                                                        tATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAg                                                           >  1:43185/1‑139 (MQ=255)
                                                                          tGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCTTCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCAGTGTTTCATGTTGAAGCt                                                         >  1:340339/1‑139 (MQ=255)
                                                                          tGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCttt                                                                                        >  6:446073/1‑108 (MQ=255)
                                                                          tGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCttt                                                                                        <  5:446073/108‑1 (MQ=255)
                                                                          tGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCt                                                         >  5:322713/1‑139 (MQ=255)
                                                                               tGAAATGGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTtgc                                                    >  3:301523/1‑139 (MQ=255)
                                                                               tGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTtgc                                                    >  7:31801/1‑139 (MQ=255)
                                                                               tGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTtgc                                                    >  6:409085/1‑139 (MQ=255)
                                                                               tGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACAACCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGACATTGTTTCCTCTTGAAGCTTTtgc                                                    >  3:118287/1‑139 (MQ=255)
                                                                               tGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATAAAAATCGGGAATCATCCAGCCAATGGATTGCCACCATGCTTTTGGAATAAAGACATTTTTTCCTGTTGAAGCTTTtgc                                                    >  8:31644/1‑139 (MQ=255)
                                                                                 aaaTCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTtgctg                                                  >  1:218906/1‑139 (MQ=255)
                                                                                 aaaTCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTtgctg                                                  >  3:174392/1‑139 (MQ=255)
                                                                                 aaaTCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTtgc                                                    <  2:139559/137‑1 (MQ=255)
                                                                                 aaaTCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTtg                                                     <  6:86095/136‑1 (MQ=255)
                                                                                      gCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGttt                                             >  5:245085/1‑139 (MQ=255)
                                                                                       ccTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCATTGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGtttt                                            >  7:145438/1‑139 (MQ=255)
                                                                                       ccTGGGTTCTCATGATCGCATGATACAATCCAATTAAAATCCGCATCTGGATCAAAAACGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGtttt                                            >  7:425392/1‑139 (MQ=255)
                                                                                          gggTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTg                                         <  8:379030/139‑1 (MQ=255)
                                                                                          gggTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTg                                         <  2:218906/139‑1 (MQ=255)
                                                                                           ggTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           >  3:8844/1‑72 (MQ=255)
                                                                                           ggTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTg                                         <  1:438048/138‑1 (MQ=255)
                                                                                           ggTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGa                                        >  7:242162/1‑139 (MQ=255)
                                                                                               ctcATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGaa                                                                                   >  2:266401/1‑92 (MQ=255)
                                                                                               ctcATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGaa                                                                                   <  1:266401/92‑1 (MQ=255)
                                                                                                tcATGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCtt                                   >  7:65479/1‑139 (MQ=255)
                                                                                                  aTGATCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCt                                    <  6:366662/136‑1 (MQ=255)
                                                                                                     aTCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAg                               <  6:256480/138‑1 (MQ=255)
                                                                                                     aTCGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGc                              >  5:200936/1‑139 (MQ=255)
                                                                                                       cGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAg                                                                              >  7:275400/1‑89 (MQ=255)
                                                                                                       cGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAg                                                                              <  8:275400/89‑1 (MQ=255)
                                                                                                       cGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTg                            >  8:110129/1‑139 (MQ=255)
                                                                                                       cGCATGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGATGCGTTTTTTGATCCTTTGAGCTg                            >  1:265978/1‑139 (MQ=255)
                                                                                                         cATGATAGAATCCAACTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTATGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTa                          >  6:249657/1‑139 (MQ=255)
                                                                                                           tGATAGAATCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTAtt                        <  6:321861/139‑1 (MQ=255)
                                                                                                                  aTCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCttt                 <  4:301523/139‑1 (MQ=255)
                                                                                                                  aTCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCttt                 <  7:416519/139‑1 (MQ=255)
                                                                                                                   tCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCttt                 >  5:252027/1‑138 (MQ=255)
                                                                                                                   tCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCttt                 >  3:293599/1‑138 (MQ=255)
                                                                                                                   tCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCTTTa                <  8:425392/139‑1 (MQ=255)
                                                                                                                   tCCAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCTTTa                <  3:191095/139‑1 (MQ=255)
                                                                                                                   tCCAATTAAAATCGCCATCTGGATCAAAATCGGGAAACATCCCGCCAATCGATTGACACCATGCTTTTGGAATAAAGCCATTGATTCCTGTTGAAGCTTATGCTGCGTTTTTTGATCCTATGAGCTGTATTTTTCttt                 >  1:272996/1‑138 (MQ=255)
                                                                                                                    ccAATTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCttt                 >  7:132277/1‑137 (MQ=255)
                                                                                                                      aaTTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCTTTAAGc             >  4:303679/1‑139 (MQ=255)
                                                                                                                       aTTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGtt                                                                      <  5:40586/81‑1 (MQ=255)
                                                                                                                       aTTAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGtt                                                                      >  6:40586/1‑81 (MQ=255)
                                                                                                                        ttAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           >  4:260914/1‑43 (MQ=255)
                                                                                                                        ttAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCaa                                                                                                           <  3:260914/43‑1 (MQ=255)
                                                                                                                        ttAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCTTTAAGCtt           >  4:185316/1‑139 (MQ=255)
                                                                                                                        ttAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCTTTAAGCtt           >  5:282369/1‑139 (MQ=255)
                                                                                                                        ttAAAATCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCTTTAAGCtt           >  5:376940/1‑139 (MQ=255)
                                                                                                                           aaaTCGGCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTg                                         <  1:236539/106‑1 (MQ=255)
                                                                                                                                 gCATCTGGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCTTTAAGCTTTTGCATTTc  >  1:236678/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                    
ATGTAGCGACACCGGCAACGATAGGAAGAATATAGTAAGGATCTTTTTCTCCTAAGTCAAACCATAAGAAGCTATGCTCTGAAATCGCCTGGGTTCTCATGATCGCATGATAGAATCCAATTAAAATCGGCATCTTGATCAAAATCGGGAAACATCCCGCCAATGGATTGACACCATGCTTTTGGAATAAAGCCATTGTTTCCTGTTGAAGCTTTTGCTGCGTTTTTTGATCCTTTGAGCTGTATTTTTCTTTAAGCTTTTGCATTTC  >  CP006881/4031909‑4032176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A