Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A26 F57 I1 R1 119 93.8 3687158 95.5% 3521235 127.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,970,969 G→A A191V (GCA→GTA)  U712_20470 ← Sensor histidine kinase WalK

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,970,9690GA97.3% 237.7 / ‑1.5 74A191V (GCA→GTA) U712_20470Sensor histidine kinase WalK
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base A (31/41);  total (32/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.02e-01

TCATGTCCATACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTGCCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCCACAACCTCTTGGTTTTCAGTCATGACGGGCTTCGC  >  CP006881/3970837‑3971093
                                                                                                                                    |                                                                                                                            
tcatGTCCATACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAAc                                                                                                                        >  5:205756/1‑139 (MQ=255)
tcatGTCCATACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAAc                                                                                                                        >  8:78478/1‑139 (MQ=255)
tcatGTCCATACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAAc                                                                                                                        <  6:350610/139‑1 (MQ=255)
tcatGTCCATACTTTTTAACCTCCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAAc                                                                                                                        >  4:10348/1‑139 (MQ=255)
   tGTCCATACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAAc                                                                                                                        <  7:31808/136‑1 (MQ=255)
   tGTCCATACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCCAGAAGAGCCGTCAAAACAAGTACCAAAc                                                                                                                        >  8:31808/1‑136 (MQ=255)
     tCCATACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCtgtg                                                                                                                   >  2:365980/1‑139 (MQ=255)
        aTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGGTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCg                                                                                                                <  3:377390/139‑1 (MQ=255)
        aTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCg                                                                                                                <  5:15046/139‑1 (MQ=255)
        aTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCg                                                                                                                <  4:415841/139‑1 (MQ=255)
        aTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCg                                                                                                                <  8:395739/139‑1 (MQ=255)
        aTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCg                                                                                                                <  7:141295/139‑1 (MQ=255)
        aTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCg                                                                                                                <  8:314767/139‑1 (MQ=255)
        aTACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCg                                                                                                                <  8:115238/139‑1 (MQ=255)
         tACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAAACTGTGCCgg                                                                                                               >  5:392160/1‑139 (MQ=255)
          aCTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCTCCTGCTTTCGCATATCTGAAAGAGGGTTGGTAATGGTTCTTGCAAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGa                                                                                                              <  1:440545/139‑1 (MQ=255)
          aCTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCGCTGCCGGa                                                                                                              >  2:216515/1‑139 (MQ=255)
           cTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGa                                                                                                              <  3:403877/138‑1 (MQ=255)
              tttAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGcc                                                                                                          >  7:400507/1‑139 (MQ=255)
              tttAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGc                                                                                                           >  3:125073/1‑138 (MQ=255)
              tttAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGc                                                                                                           >  2:358399/1‑138 (MQ=255)
                tAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCa                                                                                                         <  2:82911/138‑1 (MQ=255)
                  acattCCTCGATTAATTAGCTTTCTCAAGCTGCATCGCCTGCTATCGCATATCTGAATGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTa                                                                                                      <  4:373549/136‑1 (MQ=255)
                  aCCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTa                                                                                                      <  1:365980/139‑1 (MQ=255)
                      tCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCg                                                                                                                >  7:398740/1‑125 (MQ=255)
                      tCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCg                                                                                                                <  8:398740/125‑1 (MQ=255)
                      tCCTCGAGAAATTCCCTTTCGCAAGCTACATCGCCTGCTTTCGCATAACTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAAAAAGTACCAAACCTGTACCGGACGCCAGTATCgt                                                                                                  >  6:49349/1‑139 (MQ=255)
                        cTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGCAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACAGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGCCGCCAGTATCgttg                                                                                                >  2:124197/1‑137 (MQ=255)
                         tCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGtt                                                                                               >  1:215025/1‑139 (MQ=255)
                           gagaAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGa                                                                                             <  6:313981/139‑1 (MQ=255)
                               aaTTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGt                                                                                         <  2:21141/139‑1 (MQ=255)
                                 ttCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCt                                                                                       >  3:295947/1‑139 (MQ=255)
                                     cTTTCTCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTTATTGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCAt                                                                                   <  6:372113/139‑1 (MQ=255)
                                            aaGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTa                                                                            <  2:267698/139‑1 (MQ=255)
                                                 ccATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGAc                                                                       <  4:295947/139‑1 (MQ=255)
                                                  cATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGAc                                                                       <  7:63970/138‑1 (MQ=255)
                                                         tGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGAGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCa                                                               >  5:233453/1‑139 (MQ=255)
                                                              tCGCATATCTGAAAGGGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACt                                                           <  3:10348/138‑1 (MQ=255)
                                                                 cATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTcgcg                                                       <  3:9772/139‑1 (MQ=255)
                                                                  atttCTGACAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGa                                                      <  1:124197/136‑1 (MQ=255)
                                                                  atatCTGATAGCGGGTGGGTAATGGGTATTGCCAGAAAAATACCGCGAAGAGCCGTCAAAACAAGTACGAAACCTGTGCCGGACGCCAGTATCGTGGTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGa                                                      <  3:23557/139‑1 (MQ=255)
                                                                  atatCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGa                                                      <  2:262423/139‑1 (MQ=255)
                                                                  atatCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGa                                                      <  7:389779/139‑1 (MQ=255)
                                                                    atCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAATGACATCTTCCATACTCGCGAc                                                     >  5:402895/1‑138 (MQ=255)
                                                                             cGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATc                                           <  8:316149/139‑1 (MQ=255)
                                                                              gggtgggtAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGc                                                                                                           >  7:381638/1‑74 (MQ=255)
                                                                              gggtgggtAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGc                                                                                                           <  8:381638/74‑1 (MQ=255)
                                                                              gggtgggtAATGGTTCTTGCCAGAAAAAAACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTTTCGTGTTGATCGTCTTCATTTGATTAAAGACTTCTTCCATACTCGCGACAACGTAGATcg                                          <  5:49349/139‑1 (MQ=255)
                                                                               ggtgggtAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTaaa                                                                          <  1:184549/106‑1 (MQ=255)
                                                                               ggtgggtAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTaaa                                                                          >  2:184549/1‑106 (MQ=255)
                                                                               ggtgggtAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATcgc                                         >  3:141325/1‑139 (MQ=255)
                                                                               ggtgggtAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATcgc                                         >  5:126867/1‑139 (MQ=255)
                                                                                    gtAATGGTGCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCca                                    <  4:282643/139‑1 (MQ=255)
                                                                                    gtAATGGGTCTTCCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCca                                    <  6:429964/139‑1 (MQ=255)
                                                                                     tAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCcac                                   <  7:78478/139‑1 (MQ=255)
                                                                                     tAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAACTACCACACCTGTGCCGGACGCCAGTATCGTGTTGATCGGCTTCATTTGATTAAAGACATCATCCATACTCGCGACAACGTAGATCGCGCCcac                                   <  6:198968/139‑1 (MQ=255)
                                                                                       aTGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCcaca                                  <  3:134863/138‑1 (MQ=255)
                                                                                          gTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGa                                                                                                              >  4:262232/1‑59 (MQ=255)
                                                                                          gTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGa                                                                                                              <  3:262232/59‑1 (MQ=255)
                                                                                             cTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGa                                                                                                              >  8:394088/1‑56 (MQ=255)
                                                                                             cTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGa                                                                                                              <  7:394088/56‑1 (MQ=255)
                                                                                             cTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCa                                                                                                         >  3:458086/1‑61 (MQ=255)
                                                                                             cTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCa                                                                                                         <  4:458086/61‑1 (MQ=255)
                                                                                             cTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGAc                                                                       <  7:153216/95‑1 (MQ=255)
                                                                                             cTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGAc                                                                       >  8:153216/1‑95 (MQ=255)
                                                                                             cTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCCACAACCTCtt                           >  7:314652/1‑139 (MQ=255)
                                                                                             cTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCCACAACCTCtt                           >  3:205167/1‑139 (MQ=255)
                                                                                             cTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCAGTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCCCCAACCTCtt                           >  7:203770/1‑139 (MQ=255)
                                                                                                   aGAAAAATACCGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCCACAACCTCTTGGtttt                     <  5:35031/139‑1 (MQ=255)
                                                                                                     aaaaaTACCGAGAAGAGCCGTCAAAACAATTGCCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACa                                                                      <  2:268163/88‑1 (MQ=255)
                                                                                                     aaaaaTACCGAGAAGAGCCGTCAAAACAATTGCCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACa                                                                      >  1:268163/1‑88 (MQ=255)
                                                                                                     aaaaaTACAGAGAAGAGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCCACAACCTCTTGGtttt                     >  7:24722/1‑137 (MQ=255)
                                                                                                               agaagaGCCGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCCACAACCTCTTGGTTTTCAGTCATGACgg         >  5:342834/1‑139 (MQ=255)
                                                                                                                      ccGTCAAAACAAGTACCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCCACAACCTCTTGGTTTTCAGTCACGACGGGCTTcgc  >  5:302082/1‑139 (MQ=255)
                                                                                                                                    |                                                                                                                            
TCATGTCCATACTTTTTAACCTTCCTCGAGAAATTCCCTTTCGCAAGCTCCATCGCCTGCTTTCGCATATCTGAAAGCGGGTGGGTAATGGTTCTTGCCAGAAAAATACCGAGAAGAGCCGTCAAAACAAGTGCCAAACCTGTGCCGGACGCCAGTATCGTGTTGATCGTCTTCATTTGATTAAAGACATCTTCCATACTCGCGACAACGTAGATCGCGCCCACAACCTCTTGGTTTTCAGTCATGACGGGCTTCGC  >  CP006881/3970837‑3971093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A