Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A27 F53 I1 R1
|
117 |
75.6 |
2693952 |
95.6% |
2575418 |
126.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
3,723,717 |
T→C |
L177L (CTT→CTC) |
U712_19195 → |
putative transporter ywcJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 3,723,717 | 0 | T | C | 97.8%
| 327.6
/ NA
| 91 | L177L (CTT→CTC) | U712_19195 | putative transporter ywcJ |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (36/53); minor base A (2/0); total (38/53) |
| Fisher's exact test for biased strand distribution p-value = 1.72e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGG‑GGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAG > CP006881/3723587‑3723847
|
agccTTCTGTTCATTCCTTTTTGATTCATTTGGAAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggga < 4:90160/136‑1 (MQ=255)
gtacATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCa < 3:175602/135‑1 (MQ=255)
ttaaTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCa < 7:225489/134‑1 (MQ=255)
ttCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCa < 1:109805/137‑1 (MQ=255)
ttCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCa < 3:259871/137‑1 (MQ=255)
ttCATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCGTGCGAATTGTTTTTGAGAGGAATGGGGTTCAATTGGCTTGTGTGGCGCGCCGTTTTGAGTACCATGTGTGGCAAAGGGGGAGGAGGCaa > 2:93338/1‑139 (MQ=255)
ttCATTCCTTTTTCATTCATTTGGAAGAGCACCAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCaaa < 3:218141/139‑1 (MQ=255)
cATTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAg < 5:241477/138‑1 (MQ=255)
aTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATTCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGct > 6:22631/1‑139 (MQ=255)
aTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCACAATTGTTTTTCAGAGTAATGCTGTGCAATTGGCTAGTGTGACTCGCCTTTTTCATTACAATGTCTCTCAAATAGCAAGG‑AGCAAATct > 8:225489/1‑139 (MQ=255)
aTTCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTACGAATTGTTTTTCAGAGGAAAGCTGTGCAATTTGCTTGTGTGCCTAGCCTTTTTAATTACAATGTCTCTAAAACGGGAAGG‑GGCAAAGct > 3:8825/1‑139 (MQ=255)
tCCTTTTTGATTCATTTGGCAGAGCACGAAATGGATCCGCCGGCTTCCGAATTGTTTTTCAGATGAATGCTGTGCAATTGGCTTGTGTGCCTCGGCTTTTTCAATCCAATGTCTCTAAAAGGGGAAGG‑AGCAAAGcttt > 4:218141/1‑137 (MQ=255)
tCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGcttt > 8:52939/1‑137 (MQ=255)
tCCTTTTTGATTCATTTGGCAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGcttt > 1:301902/1‑137 (MQ=255)
gATTCATATGGCAGACCACAAAATGGAGCCGCCGGCTTCCGAATTGTTATTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTATCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAACCTTTTTACCat < 6:108229/138‑1 (MQ=255)
cAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGt > 2:277274/1‑139 (MQ=255)
cAGAGCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGAAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGt > 8:115470/1‑139 (MQ=255)
agCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGGTTTTTACCATGCTGCTTTTCGtttt > 2:211762/1‑139 (MQ=255)
agCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCTTGATGCTTTTCGtttt > 3:274049/1‑139 (MQ=255)
agCACAAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGttt > 6:167960/1‑138 (MQ=255)
acaAAATGGAGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTg < 4:298047/139‑1 (MQ=255)
aGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt > 5:1963/1‑139 (MQ=255)
aGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt > 8:110485/1‑139 (MQ=255)
aGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt > 3:65863/1‑139 (MQ=255)
aGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt > 8:107545/1‑139 (MQ=255)
ccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGc > 7:144987/4‑126 (MQ=255)
ccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGc < 8:144987/123‑1 (MQ=255)
ccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAAAGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGATTTCTGCTTATTTATTTcag > 5:185028/4‑137 (MQ=255)
gcTTCAGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCt < 4:8825/139‑1 (MQ=255)
aattGTTTTTGAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCTATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTGTTTACAATGATGCTTATCGTTTTCTGCTTCTTTATTTCCGGCTTTGAaca < 4:331390/136‑1 (MQ=255)
aattGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAaca > 7:254624/4‑139 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 1:142828/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 8:215311/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 7:294004/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 1:93338/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 4:106369/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 1:29002/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 3:266911/139‑1 (MQ=255)
tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 1:74540/139‑1 (MQ=255)
tttttCAGAGGAAGGCTGAGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 8:134469/139‑1 (MQ=255)
agagGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGTACACAGCATTGcc < 7:107545/138‑1 (MQ=255)
gaaTGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggga > 7:136729/3‑61 (MQ=255)
gaaTGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggga < 8:136729/59‑1 (MQ=255)
tGCTGTTCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATAtgtg < 3:221865/139‑1 (MQ=255)
tGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATAtgtg > 4:334412/1‑139 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggga > 3:195781/1‑53 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAaagggga < 4:195781/53‑1 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAg > 4:288216/1‑119 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAg < 3:288216/119‑1 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 2:286748/121‑1 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa < 2:291092/121‑1 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa > 1:291092/1‑121 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCa > 1:286748/1‑121 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACAt > 7:245491/1‑139 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACAt > 6:255368/1‑139 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACAt > 5:136029/1‑139 (MQ=255)
tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACAt > 4:278403/1‑139 (MQ=255)
cAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCa < 3:256895/58‑1 (MQ=255)
cAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCa > 4:256895/1‑58 (MQ=255)
gCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCatg < 3:174522/67‑1 (MQ=255)
gCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCatg > 4:174522/1‑67 (MQ=255)
gCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGCAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCAtc < 8:61673/139‑1 (MQ=255)
ttGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCt > 3:320919/1‑99 (MQ=255)
ttGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCt < 4:320919/99‑1 (MQ=255)
gtgtgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAg < 6:43946/107‑1 (MQ=255)
gtgtgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAg > 5:43946/1‑107 (MQ=255)
gtgtgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAg < 6:70365/107‑1 (MQ=255)
gtgtgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAg > 5:70365/1‑107 (MQ=255)
cGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATc > 8:176189/1‑139 (MQ=255)
cTTTTTCATTCCAATGTCTCTCTAAGGGGAAGG‑AGCAAAGCTTTTTACGATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 3:1290/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 7:115470/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 5:167960/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 5:162171/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 3:36454/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 8:254624/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 1:277274/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 4:136164/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 3:161530/139‑1 (MQ=255)
cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTATACCATGATGCGTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 6:22745/139‑1 (MQ=255)
tttCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCa < 5:255368/138‑1 (MQ=255)
ttCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCAcc > 6:188121/1‑139 (MQ=255)
ttCATTCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACAATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGATCACAGCTTAGCCAATATGTGCACATTCGCGATCTCGCTTTTGATCGAGCAcc > 8:117628/1‑139 (MQ=255)
ttCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGa < 6:1963/139‑1 (MQ=255)
ttCCAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGa < 2:226009/139‑1 (MQ=255)
cAATGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATa < 7:117628/138‑1 (MQ=255)
aTGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 5:282314/126‑1 (MQ=255)
aTGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg > 6:282314/1‑126 (MQ=255)
aTGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAg < 5:22631/139‑1 (MQ=255)
aTGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAg < 4:208131/139‑1 (MQ=255)
aTGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAg < 6:136029/139‑1 (MQ=255)
aTGTCTCTCAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAg < 6:53957/139‑1 (MQ=255)
tctcAAAGTGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACAtt < 2:91476/99‑1 (MQ=255)
tctcAAAGGGGAAGG‑AGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTTCCGGCTTTGAACACAGCATTGCCAATATGTGCACAtt > 1:91476/1‑99 (MQ=255)
|
AGGCTTCTGTTCATTCCTTTTTGATTCATCTGGCAGAGCACAAAATGGAGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGG‑GGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTTCCGGCTTCGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAG > CP006881/3723587‑3723847
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
