Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A27 F53 I1 R1 117 75.6 2693952 95.6% 2575418 126.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,724,587 C→T G80G (GGG→GGA)  U712_19200 ← SacPA operon antiterminator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,724,5870CT100.0% 209.4 / NA 69G80G (GGG→GGA) U712_19200SacPA operon antiterminator
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (36/33);  total (36/33)

TTTTATAGAGCGCTTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCAGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCCCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCAATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTAAACTTTTCATTCTCGTCGTGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATG  >  CP006881/3724454‑3724716
                                                                                                                                     |                                                                                                                                 
ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTctcc                                                                                                                                 <  4:75883/136‑1 (MQ=255)
ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTctcc                                                                                                                                 <  7:168099/136‑1 (MQ=255)
ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTctcc                                                                                                                                 <  7:268429/136‑1 (MQ=255)
ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTctcc                                                                                                                                 <  5:2287/136‑1 (MQ=255)
ttttATAGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTctcc                                                                                                                                 <  4:80699/136‑1 (MQ=255)
   tataGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGACTCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCg                                                                                                                            <  4:231614/138‑1 (MQ=255)
     taGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa                                                                                                                          <  1:280967/138‑1 (MQ=255)
     taGAGCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa                                                                                                                          <  4:113674/138‑1 (MQ=255)
        agCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCTTTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGc                                                                                                                      <  7:112132/139‑1 (MQ=255)
        agCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGc                                                                                                                      <  7:24929/139‑1 (MQ=255)
        agCGCCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGc                                                                                                                      <  8:327227/139‑1 (MQ=255)
          cgcCTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCt                                                                                                                     >  7:206326/1‑138 (MQ=255)
             ctttATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCtgatg                                                                                                                 <  2:181381/138‑1 (MQ=255)
             ctttATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCtgatg                                                                                                                 <  3:116325/138‑1 (MQ=255)
                      aTGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATc                                                                                                            <  1:38534/135‑1 (MQ=255)
                      aTGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCGGATGATATCCt                                                                                                          >  5:46004/1‑137 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTccg                                                                                                       >  1:79579/1‑137 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAg                                                                                                       >  5:107176/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAg                                                                                                       >  4:338844/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAg                                                                                                       >  1:254261/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCGCTCCTTCCGCATAGCTGATGATATCCTCAg                                                                                                       >  1:284375/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCGCTCCGTCCTCATATCTGAGGATATCCTCAg                                                                                                       >  7:49259/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCACTCCTTCCGCAAAGCTGATGATATCCACAg                                                                                                       >  4:275524/1‑139 (MQ=255)
                       tGCAGCAATTTATTCTGCACAAGAAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGAGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGATCTGCTTCCGCATAGCGGATGATATCCTCAg                                                                                                       >  8:10954/1‑139 (MQ=255)
                          agcaATTTATTCTGCACACGCAGCCCATTATGAATCATTTCGATCGCAAAGGACAAATGGTCGGAAAGCGGGTTATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTa                                                                                                    <  3:275524/139‑1 (MQ=255)
                          agcaATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTa                                                                                                    <  3:224600/139‑1 (MQ=255)
                          agcaATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTa                                                                                                    <  3:338844/139‑1 (MQ=255)
                          agcaATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCACAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTa                                                                                                    <  8:285677/139‑1 (MQ=255)
                                   ttCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATTAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTatat                                                                                           <  7:10954/139‑1 (MQ=255)
                                   ttCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTatat                                                                                           <  1:306433/139‑1 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCGTTTCGATCCCTAAGTACAAATGGTCGGAACGCGCGATATGAATTTGTTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTTATGATATCCTCAGCTATTTCTATATGctc                                                                                       <  5:312579/138‑1 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCTATCGCAAAGGACAAATGGTCTGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGAGAGCTATACTTAAGCATAGCTGATGATATACTCAGCTAATTCAatattcaaa                                                                                      >  6:237389/1‑134 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGctcc                                                                                      >  7:283529/1‑139 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGctc                                                                                       <  1:83537/138‑1 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGc                                                                                         <  2:284375/136‑1 (MQ=255)
                                        cacaAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTAGGAAAGCGCGATATGAAAGTCATCGCTCAGAGGCGCCGCGAGCAATCCATACGCATAGCTGATGATATACACAGCAATTTCTATATGatc                                                                                       >  6:312579/1‑138 (MQ=255)
                                            agcagcCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCg                                                                                  <  6:136221/139‑1 (MQ=255)
                                             gcagcCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCTTAGCTGATGATATCCTCAGCTAt                                                                                                   >  4:200262/1‑121 (MQ=255)
                                             gcagcCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCTTAGCTGATGATATCCTCAGCTAt                                                                                                   <  3:200262/121‑1 (MQ=255)
                                              cagcCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGc                                                                                <  3:90795/139‑1 (MQ=255)
                                               agcCCATTTTTAATCCTATCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCa                                                                               <  4:173912/139‑1 (MQ=255)
                                                 cccATTTTGAATCCTTTCGATCGCAAAGTAAAAATGGTCGTAAAGAGATATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATCATATCCTCAGCTATTTCTATATGCTCCTCCGGCa                                                                               <  5:237389/137‑1 (MQ=255)
                                                 cccATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAgt                                                                             <  6:110431/139‑1 (MQ=255)
                                                           aTCCTTTCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGa                                                                   <  6:107176/139‑1 (MQ=255)
                                                               tttCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCAGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTg                                                               >  7:239171/1‑139 (MQ=255)
                                                                ttCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa                                                                                                                          <  1:72071/79‑1 (MQ=255)
                                                                ttCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCa                                                                                                                          >  2:72071/1‑79 (MQ=255)
                                                                ttCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATTATATACTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGt                                                              >  5:281384/1‑139 (MQ=255)
                                                                ttCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGt                                                              >  1:175339/1‑139 (MQ=255)
                                                                ttCGATCGCAAAGGACAAATGGTCGGAAAGCGCGATAAGAATGTGATCGCTCAGCGGCGCCGCGCGCTCTCCTTCCCCATAGCTGATGATATACTCATCTATTTCTATATACTCCTCAGGAAGTGTTAGCACGATATGt                                                              >  1:334631/1‑139 (MQ=255)
                                                                                       cggAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGCGCTCTCCTTCCGCATAGCTGAAGATAACCTCAGCTATATCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGGTTGAAATTTTCATTCtcgtctcg                                       >  8:204255/3‑136 (MQ=255)
                                                                                       cggAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTgatgat                                                                                                               >  7:236842/3‑67 (MQ=255)
                                                                                       cggAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTgatgat                                                                                                               <  8:236842/65‑1 (MQ=255)
                                                                                       cggAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCtcgtcgcg                                       >  8:316915/3‑137 (MQ=255)
                                                                                       cggAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCtcgtcgcg                                       >  5:277612/3‑137 (MQ=255)
                                                                                       cggAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGAATAGCTGAAGATATCCTCAGCAATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGTTTTGTTTGAACTTTTAATTAtcgtcgcg                                       >  3:7147/3‑137 (MQ=255)
                                                                                       cggAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTACTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATATGTTTGAACTTTTCATTCtcgtcgcg                                       >  1:282250/3‑137 (MQ=255)
                                                                                              cgcgATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAAGTTTTCATTCTCGTCGCGCACGAc                                 >  4:228209/1‑138 (MQ=255)
                                                                                                cgATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCtgatg                                                                                                                 <  5:217615/56‑1 (MQ=255)
                                                                                                cgATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCtgatg                                                                                                                 >  6:217615/1‑56 (MQ=255)
                                                                                                 gATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAg                             <  2:254261/139‑1 (MQ=255)
                                                                                                        aTGTGATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCGTTTTCTATTTGCTCCTCCGGCAGTGTTTGCAGGATTTGGTTGAACTTTTCATTATCGTCGCGCACGACAAAGCTCtttt                      >  5:301693/1‑139 (MQ=255)
                                                                                                         tgtgATCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGGAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCCCGACAAAGATCTTTTc                     >  2:243461/1‑139 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACt                 >  6:115487/1‑139 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCACTCTCGTCGCGCACGACAAAGATCTTTTCCACt                 <  3:158287/139‑1 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGGTTGCAGGATTTGTTTGATCTTTTCTTTCTCGTCGCGCACGACAAAGATCTTTTCGACt                 >  1:312805/1‑139 (MQ=255)
                                                                                                             aTCGCTCAGCGGCGCCGCGAGCTCTCCTTACGCATAACTTATGATATAATAATATATTTATATATGCTCATCAGGCAGTGTTTGCAGGATTTGTTTGAAATTTTCATTCTCGTCTCGAACGACAAAGATCTTTTCCACt                 >  8:267778/1‑139 (MQ=255)
                                                                                                                 cTCAGCGGCGCCGCGCGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACATTTCATTATCGTAGCGCACGACAAAGCTCTTTAACACTTTAt             >  8:257210/1‑139 (MQ=255)
                                                                                                                    aGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCa          <  4:32222/139‑1 (MQ=255)
                                                                                                                    aGCGGCGCCGCGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCa          <  1:14891/139‑1 (MQ=255)
                                                                                                                          gccgcGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGa    >  7:329341/1‑139 (MQ=255)
                                                                                                                           ccgcGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGAt   <  8:49259/139‑1 (MQ=255)
                                                                                                                           ccgcGAGCTCTCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCTATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAAGATCTTTTCCACTTTATTCATAGGGAt   >  3:52872/1‑139 (MQ=255)
                                                                                                                            cgcgcgCTCTCCTTCCGCATAGCTGATGATATCCTCAGGAATTTCTATATGCTACTCCGGCAGTGTTTGCATGATTTGTTTGAACTTTTCATTCTCGTCGCGCACGACAAACATCTTTTCCACGTTATTAATAtggttt  >  1:171310/1‑136 (MQ=255)
                                                                                                                                     |                                                                                                                                 
TTTTATAGAGCGCTTTTATCTCATGCAGCAATTTATTCTGCACAAGCAGCCCATTTTGAATCCTTTCGATCGCAAAGGACAAATGGTCAGAAAGCGCGATATGAATGTGATCGCTCAGCGGCGCCGCGAGCTCCCCTTCCGCATAGCTGATGATATCCTCAGCTATTTCAATATGCTCCTCCGGCAGTGTTTGCAGGATTTGTTTAAACTTTTCATTCTCGTCGTGCACGACAAAGATCTTTTCCACTTTATTCATAGGGATG  >  CP006881/3724454‑3724716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A