Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F54 I1 R1 6 159.9 7861600 93.2% 7327011 135.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_002947 6,098,326 (CAAGCTGCG)2→1 coding (811‑819/867 nt) PP_5350 ← RpiR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6098324 =12 (0.080)192 (1.320) 117/246 0.0 94.6% coding (821/867 nt) PP_5350 RpiR family transcriptional regulator
?NC_002947 = 6098314 11 (0.080)coding (831/867 nt) PP_5350 RpiR family transcriptional regulator

Only 100 of 226 total aligned reads displayed.

AACCTGGCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6098481‑6098324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcttgcgTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGCCGG  <  NC_002947/6098314‑6098167
                                                                                                                                                                                                                                                                                                                  
  CCTGGCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGCGCGTGAAACGCAG                                                                                                                                                            <  1:3026585/150‑1
                 GCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCC                                                                                                                                             <  1:2600865/150‑1
                      AAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGT                                                                                                                                        <  2:572936/150‑1
                          CACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGT                                                                                                                                        <  1:1493265/146‑1
                             CGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAA                                                                                                                                 >  1:1238128/1‑150
                             CGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAA                                                                                                                                 >  1:3128872/1‑150
                             CGAGATCTACACCCCACTGACCTCGCGTATGGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAACGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAA                                                                                                                                 >  2:2261639/1‑150
                              GAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG                                                                                                                                <  1:1013886/150‑1
                              GAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG                                                                                                                                <  1:1678365/150‑1
                              GAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG                                                                                                                                <  1:3490862/150‑1
                                       ACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGAC                                                                                                                       >  2:383745/1‑150
                                       ACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGAC                                                                                                                       >  1:83536/1‑150
                                         CCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGA                                                                                                                     <  2:1006617/150‑1
                                          CCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGAC                                                                                                                    >  1:1259142/1‑150
                                               GACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAAT                                                                                                               <  1:2242502/150‑1
                                                  CTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCA                                                                                                            >  1:228658/1‑150
                                                   TCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAA                                                                                                           <  1:656212/150‑1
                                                   TCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAA                                                                                                           >  2:2500612/1‑150
                                                   TCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAA                                                                                                           <  1:3351570/150‑1
                                                   TCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAA                                                                                                           >  1:3089296/1‑150
                                                   TCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGT                                                                                                                                        <  2:380225/121‑1
                                                   TCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCA                                                                                                                                                             >  1:3433925/1‑100
                                                   TCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCA                                                                                                                                                             <  2:3433925/100‑1
                                                   TCGCGTATTGCCAACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAA                                                                                                           >  2:552348/1‑150
                                                       GTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTG                                                                                                       <  2:1311020/150‑1
                                                       GTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGACCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTG                                                                                                       >  1:32812/1‑150
                                                         ATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTA                                                                                                     <  2:3128872/150‑1
                                                              CCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTA                                                                                                                            >  1:2778869/1‑122
                                                              CCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTA                                                                                                                            <  2:2778869/122‑1
                                                                ACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGGCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCT                                                                                              >  1:2386045/1‑150
                                                                  CTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCGAGTCGATCAAG                                                                                                                                >  1:1990987/1‑114
                                                                   TGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTT                                                                                           >  1:396924/1‑150
                                                                        GTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTC                                                                                                             <  1:587116/127‑1
                                                                          GATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGC                                                                                    >  2:1437084/1‑150
                                                                               ACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTTAATTCAA                                                                                                           <  2:2038558/122‑1
                                                                               ACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCC                                                                               >  2:3185207/1‑150
                                                                                  TGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGC                                                                            >  2:1696936/1‑150
                                                                                   GCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCT                                                                           >  1:2933925/1‑150
                                                                                    CTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTC                                                                          >  2:2148887/1‑150
                                                                                      GGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCC                                                                        >  2:350508/1‑150
                                                                                        CCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTC                                                                          <  1:2290987/146‑1
                                                                                         CATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACc                                                                     >  2:1787793/1‑149
                                                                                         CATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACA                                                                     <  2:2717249/150‑1
                                                                                         CATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACA                                                                     >  1:1478133/1‑150
                                                                                          ATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAG                                                                    <  2:705180/150‑1
                                                                                          ATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAG                                                                    >  2:3015948/1‑150
                                                                                           TGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGAGAAATGTTTTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGG                                                                   >  2:1067818/1‑150
                                                                                           TGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG                                                                                                                                >  2:79057/1‑89
                                                                                           TGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAG                                                                                                                                <  1:1371535/89‑1
                                                                                             GGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTA                                                                 <  1:2083242/150‑1
                                                                                                GTTGCCATTGCGCGCGTGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCGTGCCCGCCCCCACAGGTACTG                                                              >  2:1497229/1‑150
                                                                                                 TTGCCACGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGT                                                             <  1:26736/150‑1
                                                                                                  TGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTG                                                            <  2:2956323/150‑1
                                                                                                   GCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGC                                                           <  1:2738595/150‑1
                                                                                                    CCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCA                                                          >  1:3757432/1‑150
                                                                                                     CATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCAC                                                         <  2:2351926/150‑1
                                                                                                       TGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTT                                                       <  2:396924/150‑1
                                                                                                                 GCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCG                                             <  1:770486/150‑1
                                                                                                                 GCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCG                                             >  2:1747111/1‑150
                                                                                                                   CTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGT                                           >  2:122435/1‑150
                                                                                                                   CTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGT                                           <  1:2318125/150‑1
                                                                                                                   CTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGT                                           <  2:228658/150‑1
                                                                                                                   CTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTG                                                                                                  <  2:3760177/95‑1
                                                                                                                    TAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTG                                          <  1:3820822/150‑1
                                                                                                                     AGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGC                                         <  2:1887251/150‑1
                                                                                                                      GCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTAT                                                   <  2:1379033/139‑1
                                                                                                                         TGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATT                                     >  2:3864549/1‑150
                                                                                                                         TGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATT                                     >  2:1708277/1‑150
                                                                                                                           GTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCC                                   >  2:2747185/1‑150
                                                                                                                            TCAACCGCCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCT                                  >  1:1948591/1‑150
                                                                                                                            TCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCT                                  >  2:3382660/1‑150
                                                                                                                            TCAACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCT                                  <  2:2933925/150‑1
                                                                                                                              AACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTGCTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGT                                <  2:598345/150‑1
                                                                                                                              AACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGT                                <  2:3612736/150‑1
                                                                                                                              AACCACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGT                                <  1:1747111/150‑1
                                                                                                                                  ACCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGA                            >  1:606526/1‑150
                                                                                                                                   CCTGAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGC                                                           >  1:3778132/1‑118
                                                                                                                                    CTGAAGAGCGTGAAACGCAGCTTGCGTCTTTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCCCCCACAGGTACTGTGCAATTCTATAAATCGGTGCAATTCCTGTGTGCAC                          >  2:1677803/1‑150
                                                                                                                                      GAAGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGG                        <  1:2443492/150‑1
                                                                                                                                        AGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGG                      <  1:1699564/150‑1
                                                                                                                                        AGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGG                      <  2:3282384/150‑1
                                                                                                                                        AGAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGG                      <  1:1602869/150‑1
                                                                                                                                         GAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGC                     <  1:2035448/150‑1
                                                                                                                                         GAGCGTGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCC                                                                               >  1:2100770/1‑92
                                                                                                                                              TGAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCC                >  2:3179684/1‑150
                                                                                                                                               GAAACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCC               >  1:1386536/1‑150
                                                                                                                                                  ACGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCG            >  1:3721606/1‑150
                                                                                                                                                   CGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGA           >  1:363345/1‑150
                                                                                                                                                   CGCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGA           >  1:364296/1‑150
                                                                                                                                                    GCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAA          >  2:84924/1‑150
                                                                                                                                                    GCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGC             <  1:3849441/147‑1
                                                                                                                                                    GCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGC                                                                                        <  2:1155633/72‑1
                                                                                                                                                    GCAGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGC                                                                                        >  1:1155633/1‑72
                                                                                                                                                      AGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGA        <  2:2386045/150‑1
                                                                                                                                                      AGCTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGA        <  1:3864549/150‑1
                                                                                                                                                        CTTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCC                                                                         <  2:261168/83‑1
                                                                                                                                                         TTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCGGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAAGTCCTATGTGAACGGGGCAAGCCCGCGAAGAGac     >  2:1981141/1‑148
                                                                                                                                                         TTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGC     >  2:1596854/1‑150
                                                                                                                                                         TTGCGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTATATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGC     <  2:148876/150‑1
                                                                                                                                                            CGTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGCCGG  <  2:2974232/150‑1
                                                                                                                                                                                                                                                                                                                  
AACCTGGCGATCGACGTGCATGAAGACACCGAGATCTACACCCCACTGACCTCGCGTATTGCCCACCTGGTGGTGATCGACGTGCTGGCCATGGGCGTTGCCATGGCGCGCGGGCCTAGCCTGGTCAACCACCTGAAGAGCGTGAAACGCAGCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6098481‑6098324
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagcttgcgTCTGTCGCCCAAGTCGATCAAGGCTACCGACGACTGAATTCAACCTGTACTGGCCTGTTCGCGGGCTTGCCCGCTCCCACAGGTACTGTGCACTTCTATAAATCGGTGCAATTCCTGTGTGAACGGGGCAAGCCCGCGAAGAGGCCGG  <  NC_002947/6098314‑6098167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A