Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F83 I5 R1 8 66.5 3267118 94.3% 3080892 133.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947 542,698 G→C R312P (CGT→CCT)  rpoC → DNA‑directed RNA polymerase subunit beta'

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947542,6980GC98.5% 228.3 / NA 67R312P (CGT→CCT) rpoCDNA‑directed RNA polymerase subunit beta'
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (33/33);  total (33/34)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACGACCTGTATCGCCGGGTGATCAACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCGTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGTTGACTACTCCGGCCGTTCGGTAATTACCG  >  NC_002947/542560‑542832
                                                                                                                                          |                                                                                                                                      
aCGACCTGTATCGCCGGGTGATCCACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCa                                                                                                                             <  1:1475043/150‑1 (MQ=255)
  gACCTGTATCGCCGGGTGATCAACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATc                                                                                                                           <  2:78575/150‑1 (MQ=255)
     cTGTATCGCCGGGTGATCAACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTc                                                                                                                                   <  2:1532642/139‑1 (MQ=255)
     cTGTATCGCCGGGTGATCAACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTc                                                                                                                                   >  1:1532642/1‑139 (MQ=255)
      tGTATCGCCGGGTGATCAACCGTAACAACCGTCTGAAGCGCCTGCGGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTg                                                                                                                       <  1:710832/150‑1 (MQ=255)
             ccGGGTGATCAACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGaa                                                                                                                <  2:1612803/150‑1 (MQ=255)
                ggTGATCAACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACaa                                                                                                             <  2:1326775/150‑1 (MQ=255)
                    aTCAACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGCACAACGGCCGTCCTGGTCGCGCGATCACTGGCTCGAACAAGCGt                                                                                                         <  2:677055/150‑1 (MQ=255)
                     tCAACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTc                                                                                                        >  1:401517/1‑150 (MQ=255)
                         ccGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCt                                                                                                    >  1:411998/1‑150 (MQ=255)
                          cGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTg                                                                                                   <  2:1478027/150‑1 (MQ=255)
                            tAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGaa                                                                                                 <  2:401517/150‑1 (MQ=255)
                               caacCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGACGTGCTGGTCGCGCCATCACTGGGTAGAACAAGCGTCAGCTGACGTc                                                                                              >  1:617911/1‑150 (MQ=255)
                               caacCGTCTGAAGCGCCTGCTGGATCTGTCGGCACCGGACATCATCGGGCGCAACGAAAAGCGCATACATTTTGTAGCGGTTCAATCAGTGCGATGCAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAACATCGGCTGAAGTc                                                                                              >  1:1338633/1‑150 (MQ=255)
                                aacCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGaa                                                                                                 <  2:269574/146‑1 (MQ=255)
                                aacCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGaa                                                                                                 >  1:269574/1‑146 (MQ=255)
                                aacCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTcc                                                                                             <  2:411998/150‑1 (MQ=255)
                                aacCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTcc                                                                                             >  1:1328790/1‑150 (MQ=255)
                                aacCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTcc                                                                                             >  2:582824/1‑150 (MQ=255)
                                  ccGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCt                                                                                           <  2:1328790/150‑1 (MQ=255)
                                  cagTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGATGCAGGAGGCGGTTCCAGCTCTGCTGGCCAGCTGCCGTCGTGGCCGCGCTATCATTTGCTCGAACAAGCGTCCGCTGAAGTCCCt                                                                                           <  1:1473920/148‑1 (MQ=255)
                                   cGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTg                                                                                          >  1:1479908/1‑150 (MQ=255)
                                          aGCGCCTGCTGGATCTGTCGGCGCCGGACATCCTTGTGATCTGCTGAAAGCGCGTTTTGCAGGAAGCGGTTGCCGCTCTGCTGGACAACGTCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACa                                                                                   <  1:1585420/150‑1 (MQ=255)
                                              ccTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGAt                                                                               >  1:110484/1‑150 (MQ=255)
                                               ctgctgGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACaa                                                                                                             <  2:1077922/119‑1 (MQ=255)
                                               ctgctgGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACaa                                                                                                             >  1:1077922/1‑119 (MQ=255)
                                                   tgGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAg                                                                          <  1:973536/150‑1 (MQ=255)
                                                   tgGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAg                                                                          <  1:582824/150‑1 (MQ=255)
                                                    ggATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAgg                                                                         >  1:1223116/1‑150 (MQ=255)
                                                      aTCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTa                                                                       >  2:24660/1‑150 (MQ=255)
                                                       tCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTaa                                                                      <  2:1479908/150‑1 (MQ=255)
                                                       tCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTaa                                                                      <  1:24660/150‑1 (MQ=255)
                                                           tCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCAt                                                                                                                            >  2:1475095/1‑92 (MQ=255)
                                                           tCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCAt                                                                                                                            <  1:1475095/92‑1 (MQ=255)
                                                           tCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCaa                                                                  >  1:904787/1‑150 (MQ=255)
                                                            cGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAg                                                                 <  1:221080/150‑1 (MQ=255)
                                                             ggCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATc                                                                              <  1:1459879/136‑1 (MQ=255)
                                                             ggCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATc                                                                              >  2:1459879/1‑136 (MQ=255)
                                                               cgcCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTc                                                              <  2:1403539/150‑1 (MQ=255)
                                                                gcCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCg                                                             >  1:829238/1‑150 (MQ=255)
                                                                gcCGGACATCATCGTGCGCAACGAAAAACGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTGCGCTGAAGTCCCTCGCCGACATGATGAAAGGTAAGCAAGGTCg                                                             >  2:621055/1‑150 (MQ=255)
                                                                         catcGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCa                                                    >  1:229186/1‑150 (MQ=255)
                                                                         catcGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCa                                                    <  2:260691/150‑1 (MQ=255)
                                                                          atcGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAg                                                   >  2:1459061/1‑150 (MQ=255)
                                                                           tcGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGc                                                                                                           <  2:245232/93‑1 (MQ=255)
                                                                           tcGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGc                                                                                                           >  1:245232/1‑93 (MQ=255)
                                                                            cGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGaa                                                 <  1:808597/150‑1 (MQ=255)
                                                                               gcgcAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACtt                                              <  2:1338633/150‑1 (MQ=255)
                                                                                 gcAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGc                                            >  1:659992/1‑150 (MQ=255)
                                                                                   aaCGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTc                                          >  2:839449/1‑150 (MQ=255)
                                                                                   aaCGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTc                                          >  1:681598/1‑150 (MQ=255)
                                                                                   aaCGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTc                                          >  2:1118691/1‑150 (MQ=255)
                                                                                         aaGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAg                                    >  2:1148010/1‑150 (MQ=255)
                                                                                           gcgcATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACACGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCg                                  >  1:588498/1‑150 (MQ=255)
                                                                                               aTGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGtt                              <  2:1223116/150‑1 (MQ=255)
                                                                                                   tgcAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGtt                              >  1:340689/1‑146 (MQ=255)
                                                                                                   tgcAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGtt                              <  2:340689/146‑1 (MQ=255)
                                                                                                          aGCGGTTGACGCTCTGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGTTGACTACTCCgg                   <  2:659992/150‑1 (MQ=255)
                                                                                                           gCGGTTGACGCTTTGCTGGTCAACGGCCGCCCTGGCCACGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGTTGACTACTCCGGc                  >  2:1249197/1‑150 (MQ=255)
                                                                                                                     ctctGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGc                                                                                        >  1:1391774/1‑70 (MQ=255)
                                                                                                                     ctctGCTGGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGc                                                                                        <  2:1391774/70‑1 (MQ=255)
                                                                                                                     ctctGCTGGAAAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGTTGACTACTCCGGCCGTTCGGTaa        <  1:1148010/150‑1 (MQ=255)
                                                                                                                        tgctgGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGtt                              <  2:500682/125‑1 (MQ=255)
                                                                                                                        tgctgGACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGtt                              >  1:500682/1‑125 (MQ=255)
                                                                                                                           tgGACAACGGCCTTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTTAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGTTGACTACTCCGGCCGTTCGGTAATTACCg  >  2:877170/1‑150 (MQ=255)
                                                                                                                             gACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGTTGACTACTCCGGc                  >  1:1153364/1‑132 (MQ=255)
                                                                                                                             gACAACGGCCGTCCTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGTTGACTACTCCGGc                  <  2:1153364/132‑1 (MQ=255)
                                                                                                                                       gtcctGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGaa                                                                                                 >  1:936394/1‑43 (MQ=255)
                                                                                                                                          |                                                                                                                                      
ACGACCTGTATCGCCGGGTGATCAACCGTAACAACCGTCTGAAGCGCCTGCTGGATCTGTCGGCGCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCGGTTGACGCTCTGCTGGACAACGGCCGTCGTGGTCGCGCCATCACTGGCTCGAACAAGCGTCCGCTGAAGTCCCTGGCCGACATGATCAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGTTGACTACTCCGGCCGTTCGGTAATTACCG  >  NC_002947/542560‑542832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A