Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F80 I0 R1
|
1148 |
65.4 |
3296958 |
93.8% |
3092546 |
131.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947 |
1,703,294:1 |
+T |
21.5% |
intergenic (+101/‑66) |
lysS → / → PP_1497 |
lysine‑‑tRNA ligase/TetR family transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 1,703,294 | 1 | . | T | 21.5%
| 199.4
/ 74.0
| 79 | intergenic (+101/‑66) | lysS/PP_1497 | lysine‑‑tRNA ligase/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (38/24); new base T (10/7); total (48/31) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.95e-01 |
CCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA > NC_002947/1703151‑1703439
|
ccGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tttgtag < 2:1478567/150‑6 (MQ=255)
gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑t > 1:661079/1‑142 (MQ=255)
gcgACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑t < 2:661079/142‑1 (MQ=255)
gACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCCTTTGTAGGAGc < 2:87259/150‑1 (MQ=255)
aCGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCg > 1:680072/1‑150 (MQ=255)
cGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTGC‑TGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGCgg < 1:776774/150‑1 (MQ=37)
gacATGCTGGTCCCGCGCATGCGGCCTCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCATTATGTTATCAGTTCACCATGCCTTC‑CGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGCggg < 2:56408/148‑1 (MQ=19)
aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCCTTTGTAGGAGCg > 2:1432964/1‑145 (MQ=255)
aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCCTTTGTAGGAGCg < 1:1432964/145‑1 (MQ=255)
aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCATGAAGCTTTATGTTGTCAGTGC‑TGGCCCCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tt > 2:894464/1‑135 (MQ=37)
aTCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCATGAAGCTTTATGTTGTCAGTGC‑TGGCCCCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCC‑tt < 1:894464/135‑1 (MQ=37)
ccTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGCGGGTTTAc < 2:1633592/150‑1 (MQ=255)
cGCACATGCGTCCGCAGGCCTGAGTGAGTTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAg < 2:1211616/150‑1 (MQ=255)
gTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCa > 2:859402/1‑150 (MQ=255)
cTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAg < 2:197221/131‑1 (MQ=255)
cTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAg > 1:197221/1‑131 (MQ=255)
cTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCCCTTCGCGGGTAAACCCGCTCCTACAAGGCCT‑TTGTAGGAGc > 2:607258/1‑106 (MQ=25)
cTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCCCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCCTTTGTAGGAGc < 1:607258/106‑1 (MQ=25)
cGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAg > 2:712481/1‑97 (MQ=255)
cGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAg < 1:712481/97‑1 (MQ=255)
ccgccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATccc < 2:1390458/150‑1 (MQ=255)
gccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCCCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCCTTTGTAGGAGc > 2:628044/1‑95 (MQ=21)
gccTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCCCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCCTTTGTAGGAGc < 1:628044/95‑1 (MQ=21)
ttCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGa < 1:468609/150‑1 (MQ=255)
ggcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAg > 2:1085781/1‑129 (MQ=255)
ggcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAg < 1:1085781/129‑1 (MQ=255)
gcTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCa > 1:1285465/1‑150 (MQ=255)
cTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCAt > 1:360387/1‑150 (MQ=255)
tttttCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGTCC‑TTGTAGGACTGCGTGTACCCGCGAAGGGGCCAGCACTGACGCACAACCACCATCGATTATCTCGTGTGACAccctctatt > 1:767780/1‑144 (MQ=21)
tttttCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAc > 1:1516950/1‑110 (MQ=255)
tttttCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGAc < 2:1516950/110‑1 (MQ=255)
tttttCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCAGGAGGTATCCCCCGTGACACCCGCCATg > 1:821858/1‑150 (MQ=255)
ttGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGCACCCCTCCCGTTAGGTATCCCCCGTGACACCCGCCATGCCTGAc > 2:1206948/1‑150 (MQ=37)
cTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAg > 1:1642362/1‑150 (MQ=255)
cTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAg > 2:595230/1‑150 (MQ=255)
gAAGCTTTTTTTTGTCAGTCC‑GGGCTTCTCGGGGGGAAACCCCGCTCCAACAAGGGCT‑TTGTAGGAGCGGGTTTCCCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGgc < 2:1642362/150‑1 (MQ=37)
gAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAg > 2:882091/1‑114 (MQ=255)
gAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAg < 1:882091/114‑1 (MQ=255)
gAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGgc > 1:909748/1‑150 (MQ=255)
gttgtCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCa > 2:1228451/1‑150 (MQ=255)
ttgtCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCCTTTGTAGGAGCGGGt > 1:109893/1‑61 (MQ=11)
ttgtCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AAGGCCTTTGTAGGAGCGGGt < 2:109893/61‑1 (MQ=11)
tgtCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATc < 2:360387/150‑1 (MQ=255)
tCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGc > 1:303938/1‑150 (MQ=255)
cGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCAGCCCTGCCTGACCCCGGCGCCGCCGGCAGCGCCAccgcc > 2:759924/1‑150 (MQ=38)
gCCCCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAg > 1:891948/1‑41 (MQ=255)
tctTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGc < 1:759924/150‑1 (MQ=255)
gcgGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGaaa > 1:1364389/1‑150 (MQ=255)
gggTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGc > 2:923484/1‑150 (MQ=255)
aCCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCaa > 2:1013011/1‑150 (MQ=255)
cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg > 2:1189522/1‑146 (MQ=255)
cccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTg < 1:1189522/146‑1 (MQ=255)
cccGCTCCTAC‑AAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAAt > 2:611491/1‑150 (MQ=255)
ccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTAc < 1:125612/35‑1 (MQ=255)
ccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTAc > 2:125612/1‑35 (MQ=255)
ccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:83027/1‑150 (MQ=255)
ccGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:1091896/1‑150 (MQ=255)
ccGCTCCTAC‑AAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 1:1553412/1‑150 (MQ=255)
ccGCTCCTAC‑AAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa < 1:264056/150‑1 (MQ=255)
ccGCTCCTAC‑AAGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATa > 2:264056/1‑150 (MQ=255)
gCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:747582/1‑150 (MQ=255)
gCTCCTAC‑AAGGCCTTTGTAGGAGCGGGTTTACCCGCGACGGGGAAAGCACCGACAGCCTACCCCCATGAGTTTATTCGCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATAcc > 1:1435109/1‑150 (MQ=21)
tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa < 1:595230/150‑1 (MQ=255)
tCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 2:895584/1‑150 (MQ=255)
ccTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAg < 2:1285465/150‑1 (MQ=255)
cTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAacac < 2:1092309/58‑1 (MQ=255)
cTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAacac > 1:1092309/1‑58 (MQ=255)
cTAAAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAgg < 2:1192014/150‑1 (MQ=255)
tACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCCTGAGAGATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATTGCCACCGCCTTCGCCTAAAGCGTTCAATACCAAGGc > 2:760669/1‑150 (MQ=255)
tACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGc > 1:1456294/1‑150 (MQ=255)
cAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc > 2:190746/1‑137 (MQ=255)
cAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGc < 1:190746/137‑1 (MQ=255)
cAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCAACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCg > 2:1640630/1‑150 (MQ=255)
acaaGGCCTTTGTAGTAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGt < 1:1027569/134‑1 (MQ=255)
acaaGGCCTTTGTAGTAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGt > 2:1027569/3‑136 (MQ=255)
acaaGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGAcc > 2:1411280/3‑150 (MQ=255)
aaaGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc < 2:1456294/150‑1 (MQ=255)
aaaGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGc > 2:842053/1‑150 (MQ=255)
aGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCa > 1:1629459/1‑150 (MQ=38)
aGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGGAATACCAAGGCCGCaa > 2:2850/1‑150 (MQ=255)
aGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa < 2:331443/142‑1 (MQ=255)
aGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCaa > 1:331443/1‑142 (MQ=255)
gCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGAc < 2:678046/89‑1 (MQ=255)
gCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGAc > 1:678046/1‑89 (MQ=255)
|
CCGCGACGTCATCCTGTTCCCGCACATGCGTCCGCAGGCCTGAGTGAGCTGAACGAGCCGCCTTTCGAGGCGGCTTTTTCTTGCCTGAAGCTTTATGTTGTCAGTAC‑CGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGGCC‑TTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACTGACGAAACACCCCCATGAGGTATCCCCCGTGACACCCGCCATGCCTGACCAAGGCGCCGCCGGCATCGCCACCGCCGTCGCCGAAAGCGTGCAATACCAAGGCCGCAA > NC_002947/1703151‑1703439
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
