Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F80 I0 R1 1105 125.4 6144758 94.6% 5812941 133.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,592,024 C→A 19.1% intergenic (‑89/‑114) PP_1395 ← / → PP_1396 AraC family transcriptional regulator/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,592,0240CA19.1% 371.2 / 65.3 158intergenic (‑89/‑114)PP_1395/PP_1396AraC family transcriptional regulator/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (65/61);  new base A (13/17);  total (79/79)
Fisher's exact test for biased strand distribution p-value = 5.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.22e-01

Only 100 of 164 total aligned reads displayed.

GCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTCACCCACCTTGCTTTC  >  NC_002947/1591875‑1592173
                                                                                                                                                      |                                                                                                                                                     
gCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGcc                                                                                                                                                       >  2:3003426/1‑150 (MQ=255)
       cAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGc                                                                                                                                                >  1:537824/1‑150 (MQ=255)
           tCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGa                                                                                                                                            >  2:1195115/1‑150 (MQ=255)
             cAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCAGCGCGGCAGGATc                                                                                                                                          <  1:1668429/150‑1 (MQ=255)
              tcccgcTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCAGCGCGGCAGGATCa                                                                                                                                         <  1:646683/147‑1 (MQ=255)
              aGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTCGATTGCCTGATCCTGCAGCGCGGCAGGATCa                                                                                                                                         <  1:905024/150‑1 (MQ=255)
               ggCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAg                                                                                                                                        <  2:1387218/150‑1 (MQ=255)
               ggCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCAGCGCGGCAGGATCAg                                                                                                                                        <  1:732864/150‑1 (MQ=255)
                      tatttCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCTTATTTTTTTTTAAAGACGGTCGCTATTTGAAAGCTGCATTTGGATTGCCTGAGCCTGCCGGTCTTCAGGATCAGGGAAtag                                                                                                                                 >  2:1412075/4‑148 (MQ=255)
                      cAGTTCCAGGGTCTGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCg                                                                                                                                 >  1:2827202/1‑150 (MQ=255)
                       ccgatctgggTCGGTTCGGTGGACGTGGCGGTGGTCATGCTGGCTTTGGATCGGCAGGAC‑ACGCTTCGAATGCTTGGGGAAAGACGGGCGCTAGTAGAAAGGTGCATGTGGCTTTCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGa                                                                                                                                <  1:2663947/143‑1 (MQ=255)
                        gTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGAc                                                                                                                               <  2:2316473/150‑1 (MQ=255)
                          tCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAACTGCATGTCGATTGCCTGATCCTGCAgcgc                                                                                                                                                   >  2:2810974/1‑128 (MQ=255)
                           ccAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATg                                                                                                                            <  1:2177498/150‑1 (MQ=255)
                                       cggtGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCCGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCt                                                                                                                <  1:1412075/150‑1 (MQ=255)
                                          tGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAAc                                                                                                             >  1:2725013/1‑150 (MQ=255)
                                                tGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAAcgcgccg                                                                                                       >  2:1730445/1‑150 (MQ=255)
                                                    ggtggtCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCcgcgcg                                                                                                   >  1:316364/1‑150 (MQ=255)
                                                     gtggtCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCgg                                                                                                  <  1:1128301/150‑1 (MQ=255)
                                                       ggtCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGt                                                                                                <  1:2761395/150‑1 (MQ=255)
                                                        gtCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTg                                                                                               >  1:1000038/1‑150 (MQ=255)
                                                          cATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAg                                                                                             >  1:2528251/1‑150 (MQ=255)
                                                           atgatgGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAgc                                                                                            >  1:850673/1‑150 (MQ=255)
                                                           atgatgGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAgc                                                                                            >  2:1702386/1‑150 (MQ=255)
                                                            tgatgGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAgcg                                                                                           >  1:144757/1‑150 (MQ=255)
                                                             gatgGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAgcgc                                                                                          <  2:378870/150‑1 (MQ=255)
                                                             gatgGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAgcgc                                                                                          <  1:3003426/150‑1 (MQ=255)
                                                               tgGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCcgcgcg                                                                                                   >  2:2845893/1‑139 (MQ=255)
                                                                        ctctGCTGACCGACGCAGCATAGTTTTGGGCAAAGACGGGCGCTAGTCGAAAGGTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGGAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTgg                                                                                <  1:2930674/150‑1 (MQ=255)
                                                                        ctctGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTgg                                                                                <  2:1137121/150‑1 (MQ=255)
                                                                         tctGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAgg                                                                                                                                       >  1:1912538/1‑94 (MQ=255)
                                                                         tctGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAgg                                                                                                                                       <  2:1912538/94‑1 (MQ=255)
                                                                         tctGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGcc                                                                                         >  1:980351/1‑140 (MQ=255)
                                                                         tctGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGcc                                                                                         <  2:980351/140‑1 (MQ=255)
                                                                         tctGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGc                                                                               >  1:1785496/1‑150 (MQ=255)
                                                                         tctGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGc                                                                               <  2:144757/150‑1 (MQ=255)
                                                                         tctGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGc                                                                               <  1:506037/150‑1 (MQ=255)
                                                                         tctGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGc                                                                               >  1:2653155/1‑150 (MQ=255)
                                                                           tgctgACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCAGCGCGGCAGGATc                                                                                                                                          >  1:2426149/1‑89 (MQ=255)
                                                                           tgctgACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCAGCGCGGCAGGATc                                                                                                                                          <  2:2426149/89‑1 (MQ=255)
                                                                              tgACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACAt                                                                                                                             <  2:1998632/99‑1 (MQ=255)
                                                                              tgACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACAt                                                                                                                             >  1:1998632/1‑99 (MQ=255)
                                                                              tgACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCt                                                                          >  2:8944/1‑150 (MQ=255)
                                                                              tgACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCt                                                                          <  1:8944/150‑1 (MQ=255)
                                                                                aCCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCAGCGCGGCAGGATCAg                                                                                                                                        <  2:1551146/86‑1 (MQ=255)
                                                                                aCCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCAGCGCGGCAGGATCAg                                                                                                                                        >  1:1551146/1‑86 (MQ=255)
                                                                                aCCAACGCAGCATAGGATTGGGCAAAGACGTGCGCTAGTCGAAAGCTGCATGTGGGTTGCCTGATCCTGCCGCGCTGCAGGATCAGGAAATCGACCTGCAGTAATGGCCTAACGCGCCGCGCGGCTGTGCGGCTAACCTTGGCAGCCttg                                                                        >  2:1809859/1‑148 (MQ=255)
                                                                                      gcagcaTAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTtc                                                                  <  2:2653155/150‑1 (MQ=255)
                                                                                        agcaTAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCCGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTtccg                                                                >  2:653407/1‑150 (MQ=255)
                                                                                        agcaTAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGa                                                                                                                                <  1:1154266/86‑1 (MQ=255)
                                                                                        agcaTAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGa                                                                                                                                >  2:1154266/1‑86 (MQ=255)
                                                                                           aTAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGACCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTtccgtcc                                                             <  2:1785496/150‑1 (MQ=255)
                                                                                            tAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTtccgtccg                                                            >  1:1976887/1‑150 (MQ=255)
                                                                                               gTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCt                                                         >  1:75741/1‑150 (MQ=255)
                                                                                                   gggCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCGGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCtt                                                     <  2:1550165/150‑1 (MQ=255)
                                                                                                    ggCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTc                                                    <  1:385457/150‑1 (MQ=255)
                                                                                                     gCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCa                                                   >  1:2571680/1‑150 (MQ=255)
                                                                                                      cAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCaa                                                  >  1:323321/1‑150 (MQ=255)
                                                                                                       aaaGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAg                                                 <  2:3047317/150‑1 (MQ=255)
                                                                                                       aaaGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCAgcgc                                                                                                                                                   >  1:2182750/1‑52 (MQ=255)
                                                                                                       aaaGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCAgcgc                                                                                                                                                   <  2:2182750/52‑1 (MQ=255)
                                                                                                       aaaGACGGGCGCTAGTCGAAAGCTGCATGTCGATTGCCTGATCCTGCAGCGCGGCAGGATCAGGCAATCCACAt                                                                                                                             <  1:2896639/74‑1 (MQ=14)
                                                                                                       aaaGACGGGCGCTAGTCGAAAGCTGCATGTCGATTGCCTGATCCTGCAGCGCGGCAGGATCAGGCAATCCACAt                                                                                                                             >  2:2896639/1‑74 (MQ=14)
                                                                                                         aGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGga                                               <  2:850673/150‑1 (MQ=255)
                                                                                                                cgcTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATtgtg                                        <  2:75741/150‑1 (MQ=255)
                                                                                                                   tAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCaa                                     <  2:465372/150‑1 (MQ=255)
                                                                                                                   tAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGAAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCaa                                     <  2:2940827/150‑1 (MQ=255)
                                                                                                                    aGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAAt                                    <  1:1195115/150‑1 (MQ=255)
                                                                                                                        gAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAgc                                                                                            <  2:1431441/90‑1 (MQ=255)
                                                                                                                        gAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAgc                                                                                            >  1:1431441/1‑90 (MQ=255)
                                                                                                                        gAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGAcc                                <  2:2528251/150‑1 (MQ=255)
                                                                                                                         attacTGCATGTCGATTGCCTGATCCTGCAGCGCGGCAGGATCAGGCAATCCACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCa                                                                              <  2:656618/99‑1 (MQ=17)
                                                                                                                          aaGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCt                              >  1:229624/1‑150 (MQ=255)
                                                                                                                                cATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAaaca                        <  1:1702386/150‑1 (MQ=255)
                                                                                                                                 aTGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAaacaa                       >  1:2883944/1‑150 (MQ=255)
                                                                                                                                  tgtgGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAaacaac                      <  2:537824/150‑1 (MQ=255)
                                                                                                                                     ggATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCgg                   <  2:2730372/150‑1 (MQ=255)
                                                                                                                                      gATTGCCTGATCCTGCCGCACTGCAGGATCAGGCAATCGACATGCACTAATGGCCTAACGCGCCGCGCGGGTTAGCGCCTAACCTTGTCAGCCTGGCTTTTCCGTCCCCCTGCTTCAAGGAGATTGTACAATGACCCTTAAACCACCGGt                  >  2:1377865/1‑150 (MQ=255)
                                                                                                                                         ttccTGATCCTGCCGCGCTGCAGTATCAGGCAATAGACATGCAGTAATGGCCTAACGCGCGGCGCGGGTGAGCGCCTAAACTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGTAGATTGTGCAATGACCCTTAAACAACCAGTcac               <  1:238359/148‑1 (MQ=255)
                                                                                                                                           ccTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCGGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTcaccc             >  2:2058695/1‑150 (MQ=255)
                                                                                                                                           ccTGATCCTGCAGCGCGGCAGGATCAGGCAATCCACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAAc                                                                                     <  1:2932275/78‑1 (MQ=21)
                                                                                                                                           ccTGATCCTGCAGCGCGGCAGGATCAGGCAATCCACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAAc                                                                                     >  2:2932275/1‑78 (MQ=21)
                                                                                                                                            cTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAgg                                                <  1:2979419/114‑1 (MQ=255)
                                                                                                                                            cTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTcaccca            >  2:2426567/1‑150 (MQ=255)
                                                                                                                                            cTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTcaccca            >  1:1343707/1‑150 (MQ=255)
                                                                                                                                            cTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTGAAACAACCGGTcaccca            >  1:158346/1‑150 (MQ=255)
                                                                                                                                            cTGATCCTGCAGCGCGGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTcaccca            >  2:2598206/1‑150 (MQ=255)
                                                                                                                                             tGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCTCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTcacccac           >  1:676565/1‑150 (MQ=255)
                                                                                                                                             tGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTcacccac           <  1:2801604/150‑1 (MQ=255)
                                                                                                                                               atacTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATAGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTCACCCACCt         >  1:1091723/4‑150 (MQ=255)
                                                                                                                                                  cTGCAGCGCGGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGc                                       >  2:224082/1‑117 (MQ=255)
                                                                                                                                                  cTGCAGCGCGGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGc                                       <  1:224082/117‑1 (MQ=255)
                                                                                                                                                   tGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGCGACGTAAACAACCGGTCACCCACCTTGCt     >  1:1542583/1‑150 (MQ=255)
                                                                                                                                                   tGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTCACCCACCTTGCt     <  2:2777785/150‑1 (MQ=255)
                                                                                                                                                   tGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTCACACACCTTGCt     <  2:1000038/150‑1 (MQ=255)
                                                                                                                                                    gCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTcac               >  2:364471/1‑139 (MQ=255)
                                                                                                                                                    gCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTcac               <  1:364471/139‑1 (MQ=255)
                                                                                                                                                     ccGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTCCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTCACCCACCTTGCttt   >  1:1386673/1‑150 (MQ=255)
                                                                                                                                                      cgcgCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCtt                             >  2:2914952/1‑123 (MQ=255)
                                                                                                                                                      cgcgCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCtt                             <  1:2914952/123‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
GCTCGGCCAGCTCCAGGCGCTGCAGTTCCAGGGTCGGTTCGGTGGACGTGGCGGTGGTCATGATGGCTTT‑CCTCTGCTGACCGACGCAGCATAGGTTTGGGCAAAGACGGGCGCTAGTCGAAAGCTGCATGTGGATTGCCTGATCCTGCCGCGCTGCAGGATCAGGCAATCGACATGCAGTAATGGCCTAACGCGCCGCGCGGGTGAGCGCCTAACCTTGGCAGCCTGGCTTTTCCGTCCGCCTGCTTCAAGGAGATTGTGCAATGACCCTTAAACAACCGGTCACCCACCTTGCTTTC  >  NC_002947/1591875‑1592173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A