Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F91 I0 R1 918 53.4 2573728 94.2% 2424451 136.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,691,828 T→G 15.8% intergenic (+53/‑118) PP_1487 → / → PP_1488 hypothetical protein/methyl‑accepting chemotaxis transducer

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,691,8280TG15.8% 132.6 / 21.6 63intergenic (+53/‑118)PP_1487/PP_1488hypothetical protein/methyl‑accepting chemotaxis transducer
Reads supporting (aligned to +/- strand):  ref base T (28/25);  new base G (5/5);  total (33/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01

CGTGCCTACCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTGCGCCAACGGATCC  >  NC_002947/1691683‑1691976
                                                                                                                                                  |                                                                                                                                                    
cGTGCCTACCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTgcgg                                                                                                                                                  <  1:112940/150‑1 (MQ=255)
   gCCTACCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTgcggc                                                                                                                                                 <  1:452846/148‑1 (MQ=255)
   gCCTACCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTgcggc                                                                                                                                                 >  2:452846/1‑148 (MQ=255)
       aCCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCg                                                                                                                                           <  1:54132/150‑1 (MQ=255)
        ccTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGt                                                                                                                                          <  1:38323/150‑1 (MQ=255)
            gACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTca                                                                                                                                      >  1:1240174/1‑150 (MQ=255)
            gACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGACGGAGCGCCGCACGGGCGGCGCTCGATCTca                                                                                                                                      <  1:1264834/150‑1 (MQ=38)
               gAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTA‑AGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAg                                                                                                                                   >  1:575003/1‑150 (MQ=255)
                 gCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTTAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGgc                                                                                                                                 >  2:394384/1‑150 (MQ=255)
                     gCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCaa                                                                                                                             >  2:56732/1‑150 (MQ=255)
                          ccAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTc                                                                                                                        <  1:1272222/150‑1 (MQ=255)
                              cTGCGGCTGGACCCGGGCTTGCGCCAGGCCCTGAAAAG‑AACCTGTTGGTTGGCGGCAGCGTAGTGGCGGTCACAGCCGCGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTga                                                                                                                    <  1:606154/150‑1 (MQ=25)
                                        aCCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATcac                                                                                                          <  1:56732/150‑1 (MQ=255)
                                         cccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGgc                                                                                                                                 >  2:619286/1‑126 (MQ=255)
                                         cccGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGgc                                                                                                                                 <  1:619286/126‑1 (MQ=255)
                                          ccGGGCTTGCGCAAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACAt                                                                                                        >  1:1189887/1‑150 (MQ=255)
                                                    gcCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTa                                                                                              >  1:1078318/1‑150 (MQ=255)
                                                    gcCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACAGTa                                                                                              >  2:216711/1‑150 (MQ=255)
                                                     ccAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTTGGATCGAGCGCCGCCCGTGCGGCGCGCCGGCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTaa                                                                                             >  1:927240/1‑150 (MQ=255)
                                                        ggAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTACGAc                                                                                          <  1:751160/150‑1 (MQ=255)
                                                             tGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTcc                                                                                                                       <  2:612066/116‑1 (MQ=255)
                                                             tGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTcc                                                                                                                       >  1:612066/1‑116 (MQ=255)
                                                             tGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTg                                                                                     >  2:1170662/1‑150 (MQ=255)
                                                               gAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTggg                                                                                   >  1:597909/1‑150 (MQ=255)
                                                               gAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGACGGAGCGCCGCACGGGCGGCGCTCGATCTCACAg                                                                                                                                   <  2:949244/102‑1 (MQ=21)
                                                               gAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGACGGAGCGCCGCACGGGCGGCGCTCGATCTCACAg                                                                                                                                   >  1:949244/1‑102 (MQ=21)
                                                                        gTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTc                                                                          <  1:1170662/150‑1 (MQ=255)
                                                                                 ggCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGAttt                                                                  <  2:1240174/150‑1 (MQ=255)
                                                                                  gCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGGtttt                                                                 >  1:375122/1‑150 (MQ=255)
                                                                                        gCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGc                                                           >  2:403884/1‑150 (MQ=255)
                                                                                             gTGGCGTTTCTTGTCATGTCTTATTGAGCGCCTGTGTGATCGAGCGCGGCCCGTGCGGCTCTCCGTCTCAAAGGCGCAAAATTCCTTACGACATTCACATTAATACCGTAATACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGtt                                                      <  2:575003/150‑1 (MQ=255)
                                                                                                  ggTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGaa                                                 >  2:1055851/1‑150 (MQ=255)
                                                                                                   gTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGTGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATc                                                                                                       >  2:256828/1‑95 (MQ=255)
                                                                                                   gTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGTGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATc                                                                                                       <  1:256828/95‑1 (MQ=255)
                                                                                                         gCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGAACCGACGGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGa                                          <  1:707778/150‑1 (MQ=255)
                                                                                                          ccACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAg                                         >  1:905352/1‑150 (MQ=255)
                                                                                                            aCGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAggg                                       >  1:158473/1‑150 (MQ=255)
                                                                                                                ccTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGa                                   <  2:201143/150‑1 (MQ=255)
                                                                                                                  tATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAAt                                 <  2:1189887/150‑1 (MQ=255)
                                                                                                                    ttGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAAtgt                               <  2:158473/150‑1 (MQ=255)
                                                                                                                          gcCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGa                                   <  1:389933/140‑1 (MQ=255)
                                                                                                                          gcCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGa                                   >  2:389933/1‑140 (MQ=255)
                                                                                                                          gcCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTgaagaa                         >  2:775144/1‑150 (MQ=255)
                                                                                                                           ccTGTGAGACGGAGCGCCGCACGGGCGGCGCTCGATCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAAc                        >  2:638502/1‑150 (MQ=38)
                                                                                                                            cTGTGAGACGGAGCGCCGCACGGGCGGCGCTCGATCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTga                             >  2:200583/1‑144 (MQ=37)
                                                                                                                            cTGTGAGACGGAGCGCCGCACGGGCGGCGCTCGATCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTga                             <  1:200583/144‑1 (MQ=37)
                                                                                                                             tgtgAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCTGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTg                      <  1:1055851/150‑1 (MQ=255)
                                                                                                                               tgAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGGAGAACTGGa                    <  2:905352/150‑1 (MQ=255)
                                                                                                                               tgAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGa                    <  2:453382/150‑1 (MQ=255)
                                                                                                                                  gacggAGCGCCGCACGGGCGGCGCTCGATCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAggg                                       >  2:1211698/5‑128 (MQ=38)
                                                                                                                                  gacggAGCGCCGCACGGGCGGCGCTCGATCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAggg                                       <  1:1211698/124‑1 (MQ=38)
                                                                                                                                  gaTCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCt                 >  2:406711/1‑150 (MQ=255)
                                                                                                                                   aTCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGa                                                  <  2:754265/116‑1 (MQ=255)
                                                                                                                                   aTCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGa                                                  >  1:754265/1‑116 (MQ=255)
                                                                                                                                   aTCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCtt                >  1:971919/1‑150 (MQ=255)
                                                                                                                                   aTCGAGCGCCGCCCATGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCtt                >  1:1052929/1‑150 (MQ=255)
                                                                                                                                       aGCGCCGCACGGGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTgcgc            >  2:931149/1‑150 (MQ=255)
                                                                                                                                        gcgcCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCAATGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTGCGcc           >  2:886660/1‑150 (MQ=255)
                                                                                                                                          gccgccCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTGCGCCaa         >  1:1113970/1‑150 (MQ=255)
                                                                                                                                            cgccCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTtgt                                                    <  1:781841/105‑1 (MQ=255)
                                                                                                                                            cgccCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTtgt                                                    >  2:781841/1‑105 (MQ=255)
                                                                                                                                              cccGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTAAAGAACTGGACCTTGCGCCAACGGa     <  2:1078318/150‑1 (MQ=255)
                                                                                                                                                 gTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTGCGCCAACGGATcc  <  2:1113970/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
CGTGCCTACCTGGACGAGCTGGCCCGCCAGCTGCGGCTGGACCCGGGCTTGCGCCAGGAACTGGAAAGCCAGGTG‑CGGTTGGCTGCAGCGTAGTGGCGGTGCTTGCCACGGCCTATTGAGCGCCTGTGAGATCGAGCGCCGCCCGTGCGGCGCTCCGTCTCACAGGCGCAAAATTCCTGACGACAATCACATCAATACCGTAAGACCTCTGGGCTATACTTCGGCGATTTTTCCCGCTCGTTGTGAATTCCTGAGGGCTGAATGTGAAGAACTGGACCTTGCGCCAACGGATCC  >  NC_002947/1691683‑1691976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A