Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F91 I0 R1
|
918 |
53.4 |
2573728 |
94.2% |
2424451 |
136.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| JC |
NC_002947 |
6,098,935 |
Δ6 bp |
66.7% |
coding (205‑210/867 nt) |
PP_5350 ← |
RpiR family transcriptional regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_002947 |
6098941 = | 14 (0.290) | 24 (0.530) |
21/232 |
NT |
66.7% |
coding (204/867 nt) |
PP_5350 |
RpiR family transcriptional regulator |
| ? | NC_002947 |
= 6098934 |
11 (0.240) | coding (211/867 nt) |
PP_5350 |
RpiR family transcriptional regulator |
ACTGAAAGTGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6099091‑6098941
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagctgGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCTGCA < NC_002947/6098934‑6098789
ACTGAAAGTGGCCGACCACGTGCTGCTCGACCAGGCTGCCGGCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCT < 1:605577/150‑1
GAAAGTGGCCGACCACGTGCTGCTCGACCCGGTTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGC < 2:102945/150‑1
GAAAGTGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGC > 1:201027/1‑150
AAAGTGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGTTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGTCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCG < 1:1041628/150‑1
GCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGC > 1:467661/1‑150
CCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTT < 1:691985/150‑1
CCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCAGGCCTCCCGGACCTGAAACTGGGACAAAGAGCGGGTTCCGGGGCCAGCTTCGGTCAGT > 2:1104637/1‑150
CATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATAAGCGACACTCTTTCCCTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGC < 2:675377/150‑1
AGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCAC > 2:1158296/1‑150
TCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAA < 1:1104637/150‑1
TGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACG > 1:596645/1‑150
TGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGC > 2:515023/1‑118
TGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGC < 1:515023/118‑1
GCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAA > 2:883576/1‑144
GCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAA < 1:883576/144‑1
GATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCG < 2:596645/150‑1
GAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTC < 1:1158296/150‑1
TGCGTTTCTGCCGCGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGC > 1:1048763/1‑150
TCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCC < 2:201027/150‑1
TCTGCCGCGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCC < 2:1048763/150‑1
TTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGC > 2:238731/1‑150
GCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCG > 1:232325/1‑150
TGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAG > 2:1202076/1‑150
CTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACAC > 1:666551/1‑129
CTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACAC < 2:666551/129‑1
CTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTAGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGA > 1:984059/1‑150
TCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTA < 2:13439/88‑1
TCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTA > 1:13439/1‑88
AGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGCTGGAAGTGCGCGAGCAACTTGATCCGC > 1:259523/1‑150
GGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCA > 2:243326/1‑150
CCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGC > 1:1211446/1‑150
GAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCT > 1:885756/1‑150
GCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCTGCA > 1:967970/1‑150
ACTGAAAGTGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6099091‑6098941
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagctgGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCTGCA < NC_002947/6098934‑6098789
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
