Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F54 I1 R1
|
8 |
73.7 |
3695248 |
93.5% |
3455056 |
132.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_002947 |
1,851,762 |
C→T |
S269L (TCG→TTG) |
relA → |
ATP:GTP 3'‑pyrophosphotransferase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 1,851,762 | 0 | C | T | 100.0%
| 203.1
/ NA
| 61 | S269L (TCG→TTG) | relA | ATP:GTP 3'‑pyrophosphotransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (28/33); total (28/33) |
ACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTCGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCAAG > NC_002947/1851621‑1851904
|
aCAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGgc < 1:91371/150‑1 (MQ=255)
aaGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGgcgc > 1:41448/1‑150 (MQ=255)
gCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCaa < 1:408425/150‑1 (MQ=255)
ccAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAgc > 1:1040071/1‑150 (MQ=255)
ccAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAgc > 1:1578573/1‑150 (MQ=255)
tGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAg > 2:249548/1‑150 (MQ=255)
cATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTg < 2:1040071/150‑1 (MQ=255)
aTGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTgg > 2:763464/1‑150 (MQ=255)
ggAGCGGCGGCTGGACCGCGAGCGCTTCATCATCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGTCCGACATCAGCGGCCGGGCGAAACATATCTATTTTATCTGGCGCAAGATGCAGCGCAAAGGCCTGGa < 2:846129/149‑1 (MQ=255)
gAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAATGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAg < 2:434479/150‑1 (MQ=255)
ggcggcTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCa < 1:763464/150‑1 (MQ=255)
gcggcTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAg < 2:1578573/150‑1 (MQ=255)
gcggcTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAg < 2:906897/150‑1 (MQ=255)
ggcTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGcc > 1:116851/1‑150 (MQ=255)
gcTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTAAGCCa > 1:1566090/1‑150 (MQ=255)
gACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATc < 2:449144/150‑1 (MQ=255)
ccGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTa < 1:1466071/150‑1 (MQ=255)
aGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTacgacg > 1:1337054/1‑150 (MQ=255)
cgcTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCaa > 1:1584531/1‑107 (MQ=255)
cgcTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCaa < 2:1584531/107‑1 (MQ=255)
caGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCgtgcggt > 1:1598884/1‑150 (MQ=255)
aGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCt < 1:1204793/116‑1 (MQ=255)
aGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCt > 2:1204793/1‑116 (MQ=255)
gCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCgtgcggtgc > 1:186773/1‑150 (MQ=255)
gCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCgtgcggtgc < 1:1716394/150‑1 (MQ=255)
aCCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGa < 1:1718360/117‑1 (MQ=255)
aCCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGa > 2:1718360/1‑117 (MQ=255)
aCCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGc < 2:1615049/150‑1 (MQ=255)
cAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGGGCGGTGCGCGTGCTGGTGCCg < 2:1342100/150‑1 (MQ=255)
aGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCgg > 2:523118/1‑150 (MQ=255)
gCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGa > 2:1185979/1‑150 (MQ=255)
gCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAAt < 1:1185979/150‑1 (MQ=255)
aGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGGGCGGTGAGACATATCGGTTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGCGTTCAGCCAGATCTACGAAGTGAGTGCGCTGCTCGTGCTTGTTCCGGAAATcc < 2:1324827/150‑1 (MQ=255)
aGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTac < 2:299207/113‑1 (MQ=255)
aGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTac > 1:299207/1‑113 (MQ=255)
aaCGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCcgc > 1:807131/1‑150 (MQ=255)
aaCGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCcgc < 1:249548/150‑1 (MQ=255)
cTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTac > 1:269019/1‑150 (MQ=255)
tCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCa > 1:326603/1‑75 (MQ=255)
tCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCa < 2:326603/75‑1 (MQ=255)
tCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAg > 2:865521/1‑78 (MQ=255)
tCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAg < 1:865521/78‑1 (MQ=255)
ccACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACcg > 1:1411017/1‑150 (MQ=255)
cACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACcgc > 2:1505503/1‑150 (MQ=255)
cACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACagc > 1:723437/1‑150 (MQ=255)
gTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGAACTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGc > 2:473387/1‑150 (MQ=255)
gAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCAt > 1:567228/1‑150 (MQ=255)
aaGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATc < 2:116851/150‑1 (MQ=255)
aGGCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCg < 2:807131/150‑1 (MQ=255)
ggCCGACATCAGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGt > 1:1432399/1‑150 (MQ=255)
aGCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTtg < 2:186773/150‑1 (MQ=255)
gCGGCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTtgt < 2:1566090/150‑1 (MQ=255)
ggCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTgcgc < 2:101761/90‑1 (MQ=255)
ggCCGGGCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTgcgc > 1:101761/1‑90 (MQ=255)
gggCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGAAGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTggcggc < 1:543397/150‑1 (MQ=255)
ggCGAAACATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCa < 2:1432399/150‑1 (MQ=255)
aaCATATCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTc > 1:1458750/1‑150 (MQ=255)
tatCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCaa < 1:523118/150‑1 (MQ=255)
aatCTATTTGCTCTGGAGCAAGATGCCGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCAGCGCTTTCCACCCCTCGCTGGGCATCGTGCACACCTTATGGCGGCATATTCCCaa < 2:723437/149‑1 (MQ=255)
atCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCAAg < 2:1411017/150‑1 (MQ=255)
atCTATTTGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCAAg < 2:41448/150‑1 (MQ=255)
|
ACAAGCAGATCGCCAAGCTGTTGCATGAGCGGCGGCTGGACCGCGAGCGCTTCATCAGCGACGTGATGAACCAGCTGCAGAACGAGTTGCTCGCCACTGGCGTGAAGGCCGACATCAGCGGCCGGGCGAAACATATCTATTCGATCTGGCGCAAGATGCAGCGCAAAGGCCTGGAGTTCAGCCAGATCTACGACGTGCGTGCGGTGCGCGTGCTGGTGCCGGAAATCCGCGACTGCTACACCGCGCTGGGCATCGTGCACACCTTGTGGCGGCATATTCCCAAG > NC_002947/1851621‑1851904
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A