Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1357 179.3 9500450 96.1% 9129932 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,962,070 A→T P335P (CCT→CCA flhA ← FlhA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,962,0700AT99.1% 374.6 / NA 110P335P (CCT→CCAflhAFlhA
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base T (58/50);  minor base G (0/1);  total (59/51)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 113 total aligned reads displayed.

CATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAG  >  NC_000913/1961980‑1962158
                                                                                          |                                                                                        
cATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTgg                                                                                        <  1:656267/93‑1 (MQ=255)
 aTTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGTTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGgc                                                                                       <  1:3218179/93‑1 (MQ=255)
 aTTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGgc                                                                                       >  2:1753250/1‑93 (MQ=255)
 aTTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGgc                                                                                       >  1:3038518/1‑93 (MQ=255)
    cccAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCt                                                                                    <  1:461684/93‑1 (MQ=255)
    cccAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCt                                                                                    >  2:1644786/1‑93 (MQ=255)
    cccAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCt                                                                                    <  2:3973633/93‑1 (MQ=255)
     ccAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCtt                                                                                   <  1:1380792/93‑1 (MQ=255)
     ccAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCtt                                                                                   >  1:3318228/1‑93 (MQ=255)
     ccAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCtt                                                                                   >  2:4647168/1‑93 (MQ=255)
       agagAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCtttt                                                                                 >  1:1145692/1‑93 (MQ=255)
       agagAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCtttt                                                                                 <  2:3536120/93‑1 (MQ=255)
       agagAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCtttt                                                                                 >  1:2009243/1‑93 (MQ=255)
        gataaTGTTCGAGTTGTCCATCCTCCCACGTCGCTGCGACAACGGTATTATTCCCTCCCCTTTTTACCGGTTTGGGTTCGGCTTGCGCttttt                                                                                <  2:3552548/90‑1 (MQ=255)
           aaTCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGtt                                                                             >  2:3671003/1‑93 (MQ=255)
           aaTCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGtt                                                                             >  1:2676255/1‑93 (MQ=255)
               ttCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTcgcg                                                                         >  1:1276732/1‑93 (MQ=255)
               ttCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTcgcg                                                                         >  1:1618115/1‑93 (MQ=255)
                  cAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTcc                                                                      >  1:2139402/1‑93 (MQ=255)
                  cAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTcc                                                                      >  1:3352062/1‑93 (MQ=255)
                  cAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTcc                                                                      <  1:2218898/93‑1 (MQ=255)
                  cAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTcc                                                                      >  1:3199333/1‑93 (MQ=255)
                   aGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCcg                                                                     <  1:3378360/93‑1 (MQ=255)
                    gTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCcgc                                                                    >  1:2326214/1‑93 (MQ=255)
                     ttGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTGTACCGGTTTGGGTTCGGCGGGCGCTTTTTGTTCGCGTCcgcg                                                                   <  1:2019479/93‑1 (MQ=255)
                         aCATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATc                                                               <  1:1467330/93‑1 (MQ=255)
                            tCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATccac                                                            >  2:1220077/1‑93 (MQ=255)
                            tCGTTCCACGTCACTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATccac                                                            <  1:232984/93‑1 (MQ=255)
                             cGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATccacc                                                           <  1:2892888/93‑1 (MQ=255)
                              gTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATccacca                                                          >  2:2740231/1‑93 (MQ=255)
                               ttCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAg                                                         <  2:3933665/93‑1 (MQ=255)
                                 ccACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAggt                                                       >  1:3014082/1‑92 (MQ=255)
                                  cACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAggtc                                                      <  2:162142/93‑3 (MQ=255)
                                    cGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAg                                                    >  1:448144/1‑93 (MQ=255)
                                     gTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGc                                                   >  1:2497923/1‑93 (MQ=255)
                                     gTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGc                                                   >  2:2298819/1‑93 (MQ=255)
                                      tCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGcc                                                  >  1:2694544/1‑93 (MQ=255)
                                        gCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCg                                                >  1:1637074/1‑93 (MQ=255)
                                        gCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCg                                                <  1:4476622/93‑1 (MQ=255)
                                         cTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTGAGCCCGa                                               >  2:1023847/1‑93 (MQ=255)
                                         cTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGa                                               <  2:3094384/93‑1 (MQ=255)
                                          ttCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAg                                              >  1:440192/1‑93 (MQ=255)
                                            cGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTTAGCCCGAGCa                                            >  2:3794642/1‑93 (MQ=255)
                                              aCAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAAt                                          >  1:35433/1‑93 (MQ=255)
                                              aCAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCATATCCACCAGGTCAGCCCGAGCaac                                          >  1:957488/1‑92 (MQ=255)
                                                aaCGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATcc                                        >  1:661895/1‑93 (MQ=255)
                                                  cGGTATTATTCTCTGCCGAATTTAACGGTTTGGATTCGGCTGGCGATTTTTGTTCGCGTCAGCGTATCCACCAAGTCAGCCCGAGCAATccag                                      <  1:4221452/93‑3 (MQ=255)
                                                  aggTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCgg                                      <  1:4276286/92‑1 (MQ=255)
                                                   ggTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGc                                     <  2:1212544/93‑1 (MQ=255)
                                                   ggTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGc                                     <  1:1234366/93‑1 (MQ=255)
                                                   cgTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGc                                     <  1:3140638/92‑1 (MQ=255)
                                                    gTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCa                                    >  2:4282449/1‑93 (MQ=255)
                                                     tattatTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAg                                   <  1:747819/93‑1 (MQ=255)
                                                     tattatTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAg                                   <  1:4613730/93‑1 (MQ=255)
                                                     tattatTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAg                                   <  1:4613731/93‑1 (MQ=255)
                                                      attattCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGGCATCCGGCAGt                                  >  2:3501370/1‑93 (MQ=255)
                                                       ttattCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTg                                 >  2:4726627/1‑93 (MQ=255)
                                                        tattCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGGTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCACGCAGTGa                                >  1:4046547/1‑93 (MQ=255)
                                                        tattCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGa                                >  1:4046549/1‑93 (MQ=255)
                                                        tattCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGa                                >  1:4046548/1‑93 (MQ=255)
                                                          ttCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAAc                              >  1:1354504/1‑93 (MQ=255)
                                                            ctctGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAg                            <  2:3203712/93‑1 (MQ=255)
                                                            ctctGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAg                            <  2:3599473/93‑1 (MQ=255)
                                                            ctctGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAg                            >  2:1272598/1‑93 (MQ=255)
                                                             tctGCCATTTTTTCCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGc                           <  2:3551049/93‑1 (MQ=255)
                                                             tctGCCATTTTTACCAGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGc                           >  2:1364403/1‑93 (MQ=255)
                                                               tGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCaa                         >  2:1692543/1‑93 (MQ=255)
                                                               tGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCaa                         >  2:3821523/1‑93 (MQ=255)
                                                               tGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCaa                         >  2:703618/1‑93 (MQ=255)
                                                                 ccATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCaaaa                       >  1:102800/1‑93 (MQ=255)
                                                                 ccATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCaaaa                       >  1:4394876/1‑93 (MQ=255)
                                                                 ccATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCaaaa                       >  1:4064495/1‑93 (MQ=255)
                                                                 ccATTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCaaaa                       >  1:4042066/1‑93 (MQ=255)
                                                                  cATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCaaaaa                      >  1:71837/1‑93 (MQ=255)
                                                                  cATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCaaaaa                      <  1:1857700/93‑1 (MQ=255)
                                                                   aTTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAAt                     >  1:2780846/1‑93 (MQ=255)
                                                                   aTTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAAt                     >  1:3838375/1‑93 (MQ=255)
                                                                    tttttACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATa                    <  1:4064282/93‑1 (MQ=255)
                                                                    tttttACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATa                    >  2:2267989/1‑93 (MQ=255)
                                                                    tttttACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATa                    <  1:2957892/93‑1 (MQ=255)
                                                                      tttACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCCGGTCAGCCCGAGCAATCCGGCAGTGAACCGCAAAAATAcc                  >  1:2095180/1‑93 (MQ=255)
                                                                      tttACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATAcc                  <  2:4003172/93‑1 (MQ=255)
                                                                       ttACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCa                 <  1:449626/93‑1 (MQ=255)
                                                                        tACCGGTTTGGGTTCGGGTGGCGCTTTTTGTTCGCGTCCGCGTATTCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATAACAg                >  1:2175918/1‑93 (MQ=255)
                                                                        tACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAg                <  2:3099753/93‑1 (MQ=255)
                                                                        tACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAg                <  2:665914/93‑1 (MQ=255)
                                                                         aCCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAgg               <  1:870475/93‑1 (MQ=255)
                                                                          ccGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGt              >  1:2264251/1‑93 (MQ=255)
                                                                            ggTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTc            <  2:3868502/93‑1 (MQ=255)
                                                                            ggTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTc            <  1:3579622/93‑1 (MQ=255)
                                                                             gTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCg           <  2:2282960/93‑1 (MQ=255)
                                                                              tttGGGTTCGGCTGGCGCTTTTTTTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCACGTTCgg          <  2:4606691/93‑1 (MQ=255)
                                                                                 gggTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCAt       <  2:4483329/93‑1 (MQ=255)
                                                                                 gggTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCAt       <  1:1113528/93‑1 (MQ=255)
                                                                                 gggTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCAt       <  1:3933007/93‑1 (MQ=255)
                                                                                  ggTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCAtt      >  1:1965433/1‑93 (MQ=255)
                                                                                   gTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTc     >  1:1868574/1‑93 (MQ=255)
                                                                                   gTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTc     <  1:939960/93‑1 (MQ=255)
                                                                                    ttCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTcc    <  2:4130995/93‑1 (MQ=255)
                                                                                      cGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAg  <  1:1644786/93‑1 (MQ=255)
                                                                                          |                                                                                        
CATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAG  >  NC_000913/1961980‑1962158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCAC  >  NC_000913/1961977‑1962162
                                                                                             |                                                                                            
TTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCT                                                                                              <  SRR4302544.4064443/94‑1 (MQ=60)
TTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCT                                                                                              >  SRR4302544.687427/1‑94 (MQ=60)
   CATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGC                                                                                           >  SRR4302544.3067596/1‑94 (MQ=60)
   CATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGC                                                                                           <  SRR4302544.662762/94‑1 (MQ=60)
    ATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGTTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCG                                                                                          <  SRR4302544.3248882/94‑1 (MQ=60)
       CCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTT                                                                                       <  SRR4302544.466220/94‑1 (MQ=60)
       CCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTT                                                                                       >  SRR4302544.3349836/1‑94 (MQ=60)
        CCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTT                                                                                      <  SRR4302544.1394579/94‑1 (MQ=60)
         CAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTT                                                                                     >  SRR4302544.1157092/1‑94 (MQ=60)
         CAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTT                                                                                     >  SRR4302544.2028766/1‑94 (MQ=60)
             GAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTT                                                                                 >  SRR4302544.2701904/1‑94 (MQ=60)
                 CTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCG                                                                             >  SRR4302544.1634062/1‑94 (MQ=60)
                 CTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCG                                                                             >  SRR4302544.1289305/1‑94 (MQ=60)
                    CCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCC                                                                          >  SRR4302544.3229822/1‑94 (MQ=60)
                    CCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCC                                                                          >  SRR4302544.3384051/1‑94 (MQ=60)
                    CCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCC                                                                          >  SRR4302544.2159829/1‑94 (MQ=60)
                     CAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCG                                                                         <  SRR4302544.2239770/94‑1 (MQ=60)
                      AGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGC                                                                        <  SRR4302544.3410605/94‑1 (MQ=60)
                      AGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGC                                                                        >  SRR4302544.2348267/1‑94 (MQ=60)
                        TTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTGTACCGGTTTGGGTTCGGCGGGCGCTTTTTGTTCGCGTCCGCGT                                                                      <  SRR4302544.2039082/94‑1 (MQ=60)
                            ACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCC                                                                  <  SRR4302544.1481876/94‑1 (MQ=60)
                              ATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCAC                                                                >  SRR4302544.4642309/1‑94 (MQ=60)
                               TCGTTCCACGTCACTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACC                                                               <  SRR4302544.235411/94‑1 (MQ=60)
                                CGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCA                                                              <  SRR4302544.2920756/94‑1 (MQ=60)
                                 GTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAG                                                             <  SRR4302544.2658783/94‑1 (MQ=60)
                                 CTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAG                                                             <  SRR4302544.3077518/94‑1 (MQ=60)
                                  TTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGG                                                            <  SRR4302544.3718660/94‑1 (MQ=60)
                                   TCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGT                                                           >  SRR4302544.3042978/1‑94 (MQ=60)
                                     CACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCA                                                         <  SRR4302544.1483488/94‑1 (MQ=60)
                                     CACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCA                                                         >  SRR4302544.903446/1‑94 (MQ=60)
                                      ACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAG                                                        >  SRR4302544.452604/1‑94 (MQ=60)
                                       CGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGC                                                       >  SRR4302544.2521865/1‑94 (MQ=60)
                                        GTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCC                                                      >  SRR4302544.2720410/1‑94 (MQ=60)
                                          CGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCG                                                    >  SRR4302544.2079440/1‑94 (MQ=60)
                                          CGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCG                                                    >  SRR4302544.1653194/1‑94 (MQ=60)
                                           GCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGA                                                   <  SRR4302544.4521634/94‑1 (MQ=60)
                                            CTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAG                                                  >  SRR4302544.444609/1‑94 (MQ=60)
                                                GACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAAT                                              >  SRR4302544.35782/1‑94 (MQ=60)
                                                GACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCATATCCACCAGGTCAGCCCGAGCAAC                                              >  SRR4302544.966898/1‑94 (MQ=60)
                                                  CAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCCGGTCAGCCCGAGCAATCC                                            >  SRR4302544.4124614/1‑94 (MQ=60)
                                                  CAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCC                                            >  SRR4302544.668438/1‑94 (MQ=60)
                                                     AGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGC                                         <  SRR4302544.4319944/94‑1 (MQ=60)
                                                      GGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCA                                        <  SRR4302544.1246573/94‑1 (MQ=60)
                                                      CGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCA                                        <  SRR4302544.3170485/94‑1 (MQ=60)
                                                        TATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGT                                      <  SRR4302544.755139/94‑1 (MQ=60)
                                                        TATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGT                                      <  SRR4302544.4659537/94‑1 (MQ=60)
                                                        TATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGT                                      <  SRR4302544.4659536/94‑1 (MQ=60)
                                                          TTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGGTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCACGCAGTGA                                    >  SRR4302544.4086854/1‑94 (MQ=60)
                                                          TTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGA                                    >  SRR4302544.4086855/1‑94 (MQ=60)
                                                          TTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGA                                    >  SRR4302544.4086856/1‑94 (MQ=60)
                                                            ATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAAC                                  >  SRR4302544.1367933/1‑94 (MQ=60)
                                                                   GCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAA                           >  SRR4302544.4439319/1‑94 (MQ=60)
                                                                   GCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAA                           >  SRR4302544.103741/1‑94 (MQ=60)
                                                                   GCCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAA                           >  SRR4302544.4104968/1‑94 (MQ=60)
                                                                   GCCATTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAA                           >  SRR4302544.4082321/1‑94 (MQ=60)
                                                                    CCATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAA                          >  SRR4302544.72532/1‑94 (MQ=60)
                                                                     CATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAAT                         >  SRR4302544.2807613/1‑94 (MQ=60)
                                                                     CATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAAT                         >  SRR4302544.3876436/1‑94 (MQ=60)
                                                                     CATTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAAT                         <  SRR4302544.1875664/94‑1 (MQ=60)
                                                                       TTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATAC                       <  SRR4302544.2986292/94‑1 (MQ=60)
                                                                       TTTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATAC                       <  SRR4302544.4104752/94‑1 (MQ=60)
                                                                        TTTTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCCGGTCAGCCCGAGCAATCCGGCAGTGAACCGCAAAAATACC                      >  SRR4302544.2115340/1‑94 (MQ=60)
                                                                          TTACCGGTTTGGGTTCGGGTGGCGCTTTTTGTTCGCGTCCGCGTATTCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATAACAG                    >  SRR4302544.2196534/1‑94 (MQ=60)
                                                                          TTACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAG                    <  SRR4302544.454090/94‑1 (MQ=60)
                                                                            ACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGT                  >  SRR4302544.2285550/1‑94 (MQ=60)
                                                                            ACCGGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGT                  <  SRR4302544.879102/94‑1 (MQ=60)
                                                                               GGTTTGGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCG               <  SRR4302544.3613959/94‑1 (MQ=60)
                                                                                    GGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATT          <  SRR4302544.3972069/94‑1 (MQ=60)
                                                                                    GGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATT          >  SRR4302544.1984519/1‑94 (MQ=60)
                                                                                    GGGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATT          <  SRR4302544.1124635/94‑1 (MQ=60)
                                                                                     GGTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTC         >  SRR4302544.1886634/1‑94 (MQ=60)
                                                                                      GTTCGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCC        <  SRR4302544.949214/94‑1 (MQ=60)
                                                                                         CGGCTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGG     <  SRR4302544.1661002/94‑1 (MQ=60)
                                                                                            CTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCAC  <  SRR4302544.1241211/94‑1 (MQ=60)
                                                                                            CTGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGTCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCAC  <  SRR4302544.4222375/94‑1 (MQ=60)
                                                                                             |                                                                                            
TTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCATTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCAC  >  NC_000913/1961977‑1962162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: