Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1357 |
179.3 |
9500450 |
96.1% |
9129932 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,210,781 |
T→C |
M68V (ATG→GTG) |
b2125 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,210,781 | 0 | T | C | 99.3%
| 445.3
/ ‑4.5
| 138 | M68V (ATG→GTG) | b2125 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (75/62); total (76/62) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.76e-01 |
Only 100 of 145 total aligned reads displayed.
TCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCATCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCCC > NC_000913/2210693‑2210868
|
tCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACcccc > 1:2995301/1‑93 (MQ=255)
acAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACcccc < 1:1447199/92‑1 (MQ=255)
cAAAGTCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCcca < 2:108212/93‑1 (MQ=255)
aaGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCccacc > 2:941052/1‑93 (MQ=255)
aaGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCccacc > 2:221680/1‑93 (MQ=255)
aaGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCccacc > 2:297432/1‑93 (MQ=255)
aGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCccacca > 2:2032488/1‑93 (MQ=255)
ggCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCAt > 1:4119407/1‑93 (MQ=255)
gCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCAtt > 1:2872367/1‑93 (MQ=255)
aTGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTc > 2:1043865/1‑93 (MQ=255)
aTGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTc > 2:3596724/1‑93 (MQ=255)
tGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTcc > 1:4200848/1‑93 (MQ=255)
tGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTcc < 2:2607111/93‑1 (MQ=255)
gTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCa < 1:857487/93‑1 (MQ=255)
tcttcAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGa > 2:1930785/1‑93 (MQ=255)
tcttcAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTACAGa > 2:1930915/1‑93 (MQ=255)
ttcAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGAcc > 2:3059368/1‑93 (MQ=255)
cAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCAc > 2:2322992/1‑93 (MQ=255)
aaaGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACt > 2:2566618/1‑93 (MQ=255)
aaaGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACt > 2:2404005/1‑93 (MQ=255)
aaGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTg < 1:2002074/93‑1 (MQ=255)
aGGCTTTAATTGCTTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGa < 2:3551307/93‑1 (MQ=255)
aGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGa < 2:3125937/93‑1 (MQ=255)
aGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGa < 1:3018812/93‑1 (MQ=255)
aGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGa < 1:1904404/93‑1 (MQ=255)
ggCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGAt < 2:3405577/93‑1 (MQ=255)
gCTTTAATTGCGTATTCGTCAAACGCAGCGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATg > 2:3652110/1‑93 (MQ=255)
cTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATgc < 1:3842076/93‑1 (MQ=255)
cTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATgc > 1:3902225/1‑93 (MQ=255)
tttAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATgcg > 2:2103814/1‑93 (MQ=255)
ttAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATgcgc > 2:233067/1‑93 (MQ=255)
ttAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATgcgc < 1:2423226/93‑1 (MQ=255)
tAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGcgcg > 1:3233031/1‑93 (MQ=255)
aaTTGCGGATTCGTTAAACCCAGGGAGGAAAACAATATACGGGCGGTGTTCCGGGTCCAGCACCCCCACCATTTCCAGACCACTGATGCGCgg > 2:2195122/1‑93 (MQ=255)
aTTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGc > 1:321784/1‑93 (MQ=255)
tGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCAt > 2:2023715/1‑93 (MQ=255)
tGCGTATTCGAAAAAAGCAGTGAAAAAAAAAATATGGGGGCGATGTCCCGGGTCAAGCCCCCCCACCATTTCCAGACCACTGATGCGCGGCAt < 2:4653124/93‑1 (MQ=255)
gCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATc < 2:2954877/93‑1 (MQ=255)
gCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATc < 1:1097885/93‑1 (MQ=255)
gTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTg < 2:463657/93‑1 (MQ=255)
gTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTg < 2:1062084/93‑1 (MQ=255)
gTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTg > 1:1806280/1‑93 (MQ=255)
tATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTgg > 2:946027/1‑93 (MQ=255)
tATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTgg < 1:1090712/93‑1 (MQ=255)
tATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTgg < 1:2798063/93‑1 (MQ=255)
cGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGatat > 1:1027629/1‑93 (MQ=255)
gTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATc < 1:2094656/93‑1 (MQ=255)
gTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATc > 1:275708/1‑93 (MQ=255)
tCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCg > 1:4628004/1‑93 (MQ=255)
tCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCg > 2:4131365/1‑93 (MQ=255)
tCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCg > 2:2852582/1‑93 (MQ=255)
aaaCGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCgag > 2:2478169/1‑93 (MQ=255)
aaCGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCgaga < 2:4521503/93‑1 (MQ=255)
aaCGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCgaga < 1:3467264/93‑1 (MQ=255)
aaCGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGCCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCgaga > 2:4200200/1‑93 (MQ=255)
aaCGCAGTGAGAAAAACAATATACGGGAGATGTTCAGGGTCAAGAACACCCACCATTTCCAGACCACTGATGCGCGCCATCTGGATATCgagt > 2:4001472/1‑92 (MQ=255)
aCGCAGTGAGAAAAACAAGATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGaa < 1:1157986/93‑1 (MQ=255)
gCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAAc < 1:2232961/93‑1 (MQ=255)
cAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACa < 2:4417999/93‑1 (MQ=255)
cAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACa < 1:176827/93‑1 (MQ=255)
cAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACa > 2:3241466/1‑93 (MQ=255)
gTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGc < 1:3097762/93‑1 (MQ=255)
gagaAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGcac > 2:4730952/1‑93 (MQ=255)
aaaaaCAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATc < 1:116464/93‑1 (MQ=255)
aaCAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCgg < 1:356329/93‑1 (MQ=255)
aaCAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCgg > 1:634478/1‑93 (MQ=255)
cAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGgc < 1:4180427/93‑1 (MQ=255)
atatACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGgcgc > 2:630612/1‑93 (MQ=255)
atatACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGgcgc < 1:4084309/93‑1 (MQ=255)
atatACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGgcgc > 1:3136264/1‑93 (MQ=255)
tataCGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCa > 2:2004579/1‑93 (MQ=255)
ataCGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAg > 1:1332677/1‑93 (MQ=255)
aCGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCGGGATATCGAGAAACAGCACATCCGGGCGCAGtt < 2:3517797/93‑1 (MQ=255)
gggCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCCGTTTa > 1:4174075/1‑93 (MQ=255)
gggCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTa > 1:3388727/1‑93 (MQ=255)
ggCGTTGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCTGGGCGTAGTTTag > 2:4044146/1‑92 (MQ=255)
cGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGc < 1:7726/93‑1 (MQ=255)
gATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCa < 2:1747481/93‑1 (MQ=255)
gATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCa < 2:559000/93‑1 (MQ=255)
aTGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCAc < 2:1133578/93‑1 (MQ=255)
aTGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGAAc > 1:3120664/1‑93 (MQ=255)
aTGTTCCGGGTCAAGCACCCCCACCATTGCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCAc < 1:458671/93‑1 (MQ=255)
tGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCAcc > 1:2828525/1‑93 (MQ=255)
tGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCAcc < 1:2551790/93‑1 (MQ=255)
tGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCAcc < 2:3855957/93‑1 (MQ=255)
gTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACcg > 2:200745/1‑93 (MQ=255)
ttCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACcgc < 2:2849759/93‑1 (MQ=255)
ttCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACcgc > 2:2732126/1‑93 (MQ=255)
ttCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACcgc < 1:2607587/93‑1 (MQ=255)
ttCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACcgc > 1:1601012/1‑93 (MQ=255)
ccGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCgcgc > 1:1716183/1‑93 (MQ=255)
ccGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCgcgc < 2:1794178/93‑1 (MQ=255)
ccGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCgcgc < 1:1496767/93‑1 (MQ=255)
cGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGcc < 2:583731/93‑1 (MQ=255)
cGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGcc < 1:569981/93‑1 (MQ=255)
gggTCAAGCCCCCCCACCATTTCCAGACCACTCATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCCCCGCGCCg < 2:1243017/93‑1 (MQ=255)
gggTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCg > 1:3937954/1‑93 (MQ=255)
gTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGAt < 2:3940084/93‑1 (MQ=255)
tCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATc < 1:129781/93‑1 (MQ=255)
aaGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATccc > 1:2865136/1‑93 (MQ=255)
|
TCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCATCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCCC > NC_000913/2210693‑2210868
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATAATCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCATCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCCCTTCCAC > NC_000913/2210688‑2210874
|
GATAATCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCAC < SRR4302544.3937351/94‑1 (MQ=60)
ATAATCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACC > SRR4302544.4745754/1‑94 (MQ=60)
TAATCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCC < SRR4302544.3739916/94‑1 (MQ=60)
TAATCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCC < SRR4302544.3739917/94‑1 (MQ=60)
ATCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCC > SRR4302544.3024024/1‑94 (MQ=60)
ACAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCA < SRR4302544.1461586/94‑1 (MQ=60)
CAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCAC < SRR4302544.2237984/94‑1 (MQ=60)
AAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACC > SRR4302544.1247573/1‑94 (MQ=60)
AGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCAT > SRR4302544.4160302/1‑94 (MQ=60)
GGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATT > SRR4302544.2900091/1‑94 (MQ=60)
ATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCC > SRR4302544.4242797/1‑94 (MQ=60)
GTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAG < SRR4302544.865969/94‑1 (MQ=60)
TTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCA < SRR4302544.1410468/94‑1 (MQ=60)
AAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTG > SRR4302544.2749226/1‑94 (MQ=60)
AAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTG > SRR4302544.2868405/1‑94 (MQ=60)
AAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGA < SRR4302544.2021517/94‑1 (MQ=60)
AGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGAT < SRR4302544.1922812/94‑1 (MQ=60)
AGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGAT < SRR4302544.3047749/94‑1 (MQ=60)
GCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGC > SRR4302544.3940986/1‑94 (MQ=60)
GCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGC > SRR4302544.3940987/1‑94 (MQ=60)
CTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCG > SRR4302544.566971/1‑94 (MQ=60)
CTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCG < SRR4302544.3880192/94‑1 (MQ=60)
TTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCG > SRR4302544.3263974/1‑94 (MQ=60)
TTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCG < SRR4302544.2446297/94‑1 (MQ=60)
AATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGC > SRR4302544.325124/1‑94 (MQ=60)
GCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCT < SRR4302544.1108807/94‑1 (MQ=60)
CGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTG > SRR4302544.1823934/1‑94 (MQ=60)
TATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGA < SRR4302544.1101561/94‑1 (MQ=60)
TATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGA < SRR4302544.2825020/94‑1 (MQ=60)
ATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGAT < SRR4302544.3165413/94‑1 (MQ=60)
TCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATAT > SRR4302544.1037876/1‑94 (MQ=60)
CGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATC > SRR4302544.278597/1‑94 (MQ=60)
GTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCG < SRR4302544.2114812/94‑1 (MQ=60)
GTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCG > SRR4302544.4673890/1‑94 (MQ=60)
AACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAA < SRR4302544.3500337/94‑1 (MQ=60)
ACGCAGTGAGAAAAACAAGATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAA < SRR4302544.1169512/94‑1 (MQ=60)
GCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACA < SRR4302544.2253962/94‑1 (MQ=60)
CAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAG < SRR4302544.2950954/94‑1 (MQ=60)
CAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAG < SRR4302544.178578/94‑1 (MQ=60)
GTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCA < SRR4302544.3127261/94‑1 (MQ=60)
AAAAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCC < SRR4302544.117525/94‑1 (MQ=60)
AAACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGG > SRR4302544.640729/1‑94 (MQ=60)
AACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGG < SRR4302544.359982/94‑1 (MQ=60)
ACAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGC < SRR4302544.1137169/94‑1 (MQ=60)
CAATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCG < SRR4302544.4221828/94‑1 (MQ=60)
AATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGC > SRR4302544.1807985/1‑94 (MQ=60)
AATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGC > SRR4302544.3166057/1‑94 (MQ=60)
ATATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCA < SRR4302544.4124933/94‑1 (MQ=60)
TATACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAG > SRR4302544.1345798/1‑94 (MQ=60)
TACGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTT < SRR4302544.3090325/94‑1 (MQ=60)
CGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCCGTTTA > SRR4302544.4215418/1‑94 (MQ=60)
CGGGCGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTA > SRR4302544.3421110/1‑94 (MQ=60)
CGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGCTATCGAGAAACAGCACATCCGGGCGCAGTTTATGCA > SRR4302544.2017054/1‑94 (MQ=60)
CGATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCA < SRR4302544.7796/94‑1 (MQ=60)
GATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCAC < SRR4302544.4287063/94‑1 (MQ=60)
GATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGAAC > SRR4302544.3150331/1‑94 (MQ=60)
ATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACC > SRR4302544.2555217/1‑94 (MQ=60)
ATGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACC > SRR4302544.2855851/1‑94 (MQ=60)
ATGTTCCGGGTCAAGCACCCCCACCATTGCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACC < SRR4302544.463183/94‑1 (MQ=60)
TGTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCG < SRR4302544.2576285/94‑1 (MQ=60)
GTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGC < SRR4302544.724982/94‑1 (MQ=60)
GTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGC > SRR4302544.1616802/1‑94 (MQ=60)
GTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGC < SRR4302544.350554/94‑1 (MQ=60)
GTTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGC < SRR4302544.3308508/94‑1 (MQ=60)
TTCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCG < SRR4302544.2632629/94‑1 (MQ=60)
TCCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGC > SRR4302544.1733057/1‑94 (MQ=60)
CCGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCC < SRR4302544.1511568/94‑1 (MQ=60)
CGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCG > SRR4302544.3977066/1‑94 (MQ=60)
CGGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCG < SRR4302544.575550/94‑1 (MQ=60)
GGGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGA > SRR4302544.4166973/1‑94 (MQ=60)
GGTCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGAT > SRR4302544.1525991/1‑94 (MQ=60)
TCAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCC < SRR4302544.130976/94‑1 (MQ=60)
CAAGCATCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCCC > SRR4302544.4083493/1‑94 (MQ=60)
CAAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCCC > SRR4302544.2892796/1‑94 (MQ=60)
AAGCACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCCCT < SRR4302544.952586/94‑1 (MQ=60)
ACCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCCCTTCCA < SRR4302544.4196669/94‑1 (MQ=60)
CCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCCCTTCCAC > SRR4302544.2698964/1‑94 (MQ=60)
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GATAATCAAAGGCATGTTCTTCAAAGGCTTTAATTGCGTATTCGTCAAACGCAGTGAGAAAAACAATATACGGGCGATGTTCCGGGTCAAGCATCCCCACCATTTCCAGACCACTGATGCGCGGCATCTGGATATCGAGAAACAGCACATCCGGGCGCAGTTTATGCACCGCGCCGATCCCTTCCAC > NC_000913/2210688‑2210874
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
