Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A1 F1 I1 R1 | 1357 | 179.3 | 9500450 | 96.1% | 9129932 | 93.0 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,139,669 | +C | coding (233/330 nt) coding (132/159 nt) |
yijI → b4558 ← |
hypothetical protein hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,139,667 | 1 | . | C | 99.5% | 653.4 / ‑4.3 | 201 | coding (231/330 nt) coding (134/159 nt) | yijI b4558 | hypothetical protein hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (102/98); total (102/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
Only 100 of 220 total aligned reads displayed.
GCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAT > NC_000913/4139575‑4139754 | gcTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTg > 1:4680583/1‑93 (MQ=255) cTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑c < 2:3757353/93‑1 (MQ=255) tCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑ccc > 2:4646561/1‑92 (MQ=255) tCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑ccc > 2:1372980/1‑92 (MQ=255) cTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAATGGCGCTTTTTGCGTTG‑ccctt > 1:1176269/1‑90 (MQ=255) cTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑ccctt > 2:2692818/1‑90 (MQ=255) tcgtcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCgg > 2:4731073/1‑93 (MQ=255) tcgtcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCgg > 1:3028267/1‑93 (MQ=255) cgtcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGt < 2:2118864/93‑1 (MQ=255) cgtcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGt > 1:307531/1‑93 (MQ=255) gtcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTc > 2:3658714/1‑93 (MQ=255) tcgGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCa > 2:1240581/1‑93 (MQ=255) gCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTg > 1:3926008/1‑93 (MQ=255) gctgggAAAGCAGAAACTGGCAGTTTACGCCCGCCAGTGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTAAGTgc < 2:627491/89‑1 (MQ=255) cccGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTgcg > 2:1455512/1‑93 (MQ=255) ccGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTgcgc > 1:1330552/1‑93 (MQ=255) ccGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTgcgc > 2:3298696/1‑93 (MQ=255) cGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCa > 1:4201531/1‑93 (MQ=255) cGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCa < 1:717846/93‑1 (MQ=255) ggAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAg > 2:757091/1‑93 (MQ=255) gAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAgg > 1:1984133/1‑93 (MQ=255) aaaTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGt < 2:3946493/93‑1 (MQ=255) aaTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGtt > 1:2327104/1‑93 (MQ=255) aTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTa < 1:2356554/93‑1 (MQ=255) aTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTa < 1:1127091/93‑1 (MQ=255) aTCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTa < 2:1619549/93‑1 (MQ=255) tCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTAt < 2:3102418/93‑1 (MQ=255) cAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATg < 1:3591604/93‑1 (MQ=255) cAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATg > 2:871860/1‑93 (MQ=255) gTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGcc > 2:3096749/1‑93 (MQ=255) aaCTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCAc < 1:1614383/93‑1 (MQ=255) cTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTc < 1:2623644/93‑1 (MQ=255) tGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCa > 2:2455003/1‑93 (MQ=255) ggCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCaa < 1:2800041/93‑1 (MQ=255) cAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAAtt < 1:1859765/93‑1 (MQ=255) cAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAAtt > 2:2467951/1‑93 (MQ=255) cAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAAtt < 2:2669089/93‑1 (MQ=255) gTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtg < 2:2965938/93‑1 (MQ=255) ttATCGCCCGCCAGAGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgt > 2:2358623/1‑93 (MQ=255) tATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgtg > 2:2298171/1‑93 (MQ=255) tATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTtgtg < 1:412475/93‑1 (MQ=255) ttCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGtga < 1:1250286/92‑1 (MQ=255) ttCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGtga < 2:3404783/92‑1 (MQ=255) tCGGCCGGCAGCGTATCGGTGCCAATCACCGCAAGGGCGCTTTTGGCGTTG‑CCGTTGCGGTCAGTGCGCAGGTTATGCCTCTCAATTTGtgat < 2:3552227/93‑1 (MQ=255) tCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGTGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTGATGCCACTCAATTTGtgat > 2:1143509/1‑93 (MQ=255) tCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGtgat > 2:2258013/1‑93 (MQ=255) ccgccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaa > 1:1439725/1‑93 (MQ=255) gccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaaaa > 2:2199511/1‑93 (MQ=255) gccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGaaaaa < 2:2341919/93‑1 (MQ=255) ccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAg < 1:3719575/93‑1 (MQ=255) ccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAg > 2:2022599/1‑93 (MQ=255) ccAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAg > 2:3195269/1‑93 (MQ=255) cAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGt > 2:1042421/1‑93 (MQ=255) aGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTa > 2:3337905/1‑93 (MQ=255) gCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAt > 1:4725692/1‑93 (MQ=255) gCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAt > 1:2931977/1‑93 (MQ=255) gCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAt < 2:339736/93‑1 (MQ=255) cGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAtt < 2:4358940/93‑1 (MQ=255) cGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAtt < 1:4462712/93‑1 (MQ=255) gTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTa > 1:4599835/1‑93 (MQ=255) tATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTac > 2:2483362/1‑93 (MQ=255) tATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTac > 2:4470545/1‑93 (MQ=255) aTCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATGTGTGATGAAAAAGTATTaca < 2:163707/93‑1 (MQ=255) tCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTacac > 2:1662332/1‑93 (MQ=255) tCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTacac < 1:2309898/93‑1 (MQ=255) tCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTacac > 2:1099132/1‑93 (MQ=255) tCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTacac > 2:4102611/1‑93 (MQ=255) ggTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAg < 1:3692645/93‑1 (MQ=255) gTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGc < 1:1664045/93‑1 (MQ=255) tGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCg > 1:3984569/1‑93 (MQ=255) tGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCg < 2:4119908/93‑1 (MQ=255) tGCCAATCAGCGCAAGGGCGCTCTGGCCGTTGCCC‑TTGCTGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCg < 1:2476746/93‑1 (MQ=255) gCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGt > 2:3047268/1‑93 (MQ=255) cAATCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTTAATTTGTGATGAAAAAGTATTACACAGCGttt > 1:3384265/1‑93 (MQ=255) aaTCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTc < 1:1812492/93‑1 (MQ=255) aaTCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTc < 1:3127931/93‑1 (MQ=255) aaTCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTc > 2:3174987/1‑93 (MQ=255) aaTCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTc < 1:3158845/93‑1 (MQ=255) aTCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCa > 2:2895589/1‑93 (MQ=255) aTCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCa > 1:2573475/1‑93 (MQ=255) aTCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCa < 1:2222017/93‑1 (MQ=255) tCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCaa < 2:1790407/93‑1 (MQ=255) tCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCaa > 2:3360981/1‑93 (MQ=255) tCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCaa > 1:638469/1‑93 (MQ=255) tCAGCGCAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCaa > 2:1378669/1‑93 (MQ=255) cAGCGCAAGGGTGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAAc > 1:3205850/1‑93 (MQ=255) gcgcAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGt > 1:806017/1‑93 (MQ=255) cgcAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTg < 2:553232/93‑1 (MQ=255) cgcAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTg < 1:2705984/93‑1 (MQ=255) cAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGc > 1:4331725/1‑93 (MQ=255) cAAGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGc < 1:1738902/93‑1 (MQ=255) aaGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCt < 1:1638931/93‑1 (MQ=255) aaGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCt > 2:2396135/1‑93 (MQ=255) aaGGGCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCt < 2:3733524/93‑1 (MQ=255) ggCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGc > 2:1513678/1‑93 (MQ=255) ggCGCTTTTGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGc > 1:2221384/1‑93 (MQ=255) ttttGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGAc < 2:4037248/93‑1 (MQ=255) tttGGCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGAcg < 1:170158/93‑1 (MQ=255) gCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCa < 1:2918187/93‑1 (MQ=255) gCGTTGCCC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCa < 1:353522/93‑1 (MQ=255) | GCTTCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CC‑TTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAT > NC_000913/4139575‑4139754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
TCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCG > NC_000913/4139578‑4139762 | TCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCCT > SRR4302544.3295632/1‑94 (MQ=60) TCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCctt < SRR4302544.1196809/94‑4 (MQ=60) CCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAATGGCGCTTTTTGCGTTG‑CCctt > SRR4302544.1187995/1‑91 (MQ=60) CCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCctt < SRR4302544.4768607/94‑4 (MQ=60) CTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTG > SRR4302544.3017717/1‑94 (MQ=60) CTGTTCGTCGGCCCCGGAAATCAGTAACGGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTG < SRR4302544.1357300/94‑1 (MQ=60) TGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTTGCGTTG‑CCcctcc > SRR4302544.232131/1‑89 (MQ=60) GTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCG < SRR4302544.1590277/94‑1 (MQ=60) TTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGG > SRR4302544.3057280/1‑94 (MQ=60) TCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGT > SRR4302544.310719/1‑94 (MQ=60) GTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCA > SRR4302544.4186559/1‑94 (MQ=60) GTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCA > SRR4302544.1855959/1‑94 (MQ=60) TCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCACGCCAGCGTATCGGTGCCAATCAGCGCAAGTGCGCTTTTGGCGTTGCCCTTGCGGTCAG < SRR4302544.540705/94‑1 (MQ=60) CGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGG > SRR4302544.681836/1‑94 (MQ=60) GGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTG > SRR4302544.1572879/1‑94 (MQ=60) GGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTG > SRR4302544.3965005/1‑94 (MQ=60) GGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTG > SRR4302544.1747308/1‑94 (MQ=60) CCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGC > SRR4302544.1343645/1‑94 (MQ=60) CCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCA > SRR4302544.4243514/1‑94 (MQ=60) CGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAG < SRR4302544.724933/94‑1 (MQ=60) GGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGG > SRR4302544.2003399/1‑94 (MQ=60) GAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGT > SRR4302544.3076084/1‑94 (MQ=60) AAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTT > SRR4302544.2349164/1‑94 (MQ=60) AAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTT < SRR4302544.1184343/94‑1 (MQ=60) ATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTAT < SRR4302544.798064/94‑1 (MQ=60) ATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTAT < SRR4302544.2378874/94‑1 (MQ=60) ATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTAT < SRR4302544.1138324/94‑1 (MQ=60) CAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGC < SRR4302544.3626093/94‑1 (MQ=60) CAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGC < SRR4302544.4299803/94‑1 (MQ=60) aacttgcatttacccCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCCTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACT < SRR4302544.3755858/79‑1 (MQ=60) AACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACT < SRR4302544.1630298/94‑1 (MQ=60) ACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTC > SRR4302544.2470095/1‑94 (MQ=60) CTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCA < SRR4302544.2648802/94‑1 (MQ=60) GGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAAT < SRR4302544.2827023/94‑1 (MQ=60) GCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATT < SRR4302544.1954904/94‑1 (MQ=60) GCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATT < SRR4302544.2101952/94‑1 (MQ=60) CAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTT > SRR4302544.687297/1‑94 (MQ=60) CAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTT < SRR4302544.1877745/94‑1 (MQ=60) CAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTT > SRR4302544.3741348/1‑94 (MQ=60) AGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTG < SRR4302544.2551672/94‑1 (MQ=60) TTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTG < SRR4302544.397379/94‑1 (MQ=60) TATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGA < SRR4302544.416680/94‑1 (MQ=60) TTCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGAT < SRR4302544.1262589/94‑1 (MQ=60) TCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATG < SRR4302544.2299564/94‑1 (MQ=60) CGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGA < SRR4302544.2348461/94‑1 (MQ=60) CCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAA > SRR4302544.1454054/1‑94 (MQ=60) CCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAA < SRR4302544.2917116/94‑1 (MQ=60) CCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAA > SRR4302544.3376758/1‑94 (MQ=60) CCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAA < SRR4302544.3601160/94‑1 (MQ=60) GCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAG < SRR4302544.2748589/94‑1 (MQ=60) GCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAG < SRR4302544.363209/94‑1 (MQ=60) CCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAG < SRR4302544.165312/94‑1 (MQ=60) CCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGT < SRR4302544.3756567/94‑1 (MQ=60) CCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGT < SRR4302544.1657202/94‑1 (MQ=60) AGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAT > SRR4302544.4772336/1‑94 (MQ=60) AGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTAT > SRR4302544.2960151/1‑94 (MQ=60) GCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATA > SRR4302544.4045153/1‑94 (MQ=60) CGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTA < SRR4302544.4507625/94‑1 (MQ=60) CGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTA > SRR4302544.4645567/1‑94 (MQ=60) GTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTAC < SRR4302544.2616154/94‑1 (MQ=60) TATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACA < SRR4302544.3829599/94‑1 (MQ=60) TCTGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAATTATTACACA < SRR4302544.3005795/94‑1 (MQ=60) TCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACA < SRR4302544.2331737/94‑1 (MQ=60) CGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAG < SRR4302544.4433758/94‑1 (MQ=60) CGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAG < SRR4302544.4433759/94‑1 (MQ=60) GGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGC < SRR4302544.236794/94‑1 (MQ=60) GGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGC < SRR4302544.3729435/94‑1 (MQ=60) GGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGC > SRR4302544.1791188/1‑94 (MQ=60) GTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCG < SRR4302544.4569738/94‑1 (MQ=60) GTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCG > SRR4302544.4024232/1‑94 (MQ=60) GTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCG < SRR4302544.1680431/94‑1 (MQ=60) TGCCAATCAGCGCAAGGGCGCTCTGGCCGTTGCCCTTGCTGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGT < SRR4302544.2500434/94‑1 (MQ=60) GCCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTT < SRR4302544.227066/94‑1 (MQ=60) CCAATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTTAATTTGTGATGAAAAAGTATTACACAGCGTTT > SRR4302544.3416598/1‑94 (MQ=60) AATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCA < SRR4302544.3188889/94‑1 (MQ=60) AATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCA > SRR4302544.2598198/1‑94 (MQ=60) AATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCA < SRR4302544.3157654/94‑1 (MQ=60) AATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCA < SRR4302544.3188887/94‑1 (MQ=60) AATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCA < SRR4302544.1830189/94‑1 (MQ=60) AATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCA < SRR4302544.3188888/94‑1 (MQ=60) ATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAA < SRR4302544.2242919/94‑1 (MQ=60) ATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAA < SRR4302544.2242918/94‑1 (MQ=60) ATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAA > SRR4302544.644763/1‑94 (MQ=60) ATCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAA > SRR4302544.4709558/1‑94 (MQ=60) TCAGCGCAAGGGTGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAAC > SRR4302544.3236427/1‑94 (MQ=60) TCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAAC > SRR4302544.38237/1‑94 (MQ=60) TCAGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAAC > SRR4302544.2991624/1‑94 (MQ=60) AGCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGT > SRR4302544.813876/1‑94 (MQ=60) GCGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTG < SRR4302544.315202/94‑1 (MQ=60) CGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGG < SRR4302544.2732006/94‑1 (MQ=60) CGCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGG > SRR4302544.2693973/1‑94 (MQ=60) GCAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGC > SRR4302544.4375827/1‑94 (MQ=60) CAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCT < SRR4302544.1755929/94‑1 (MQ=60) CAAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCT < SRR4302544.1551913/94‑1 (MQ=60) AAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTT < SRR4302544.1693065/94‑1 (MQ=60) AAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTT < SRR4302544.1655075/94‑1 (MQ=60) AAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTT < SRR4302544.1320835/94‑1 (MQ=60) AAGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCAACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTT > SRR4302544.2645132/1‑94 (MQ=60) AGGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTG < SRR4302544.993574/94‑1 (MQ=60) GGGCGCTTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGC > SRR4302544.2242278/1‑94 (MQ=60) TTTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACG > SRR4302544.1762853/1‑94 (MQ=60) TTTGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGC < SRR4302544.171836/94‑1 (MQ=60) TGGCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGC < SRR4302544.350985/94‑1 (MQ=60) GCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAT < SRR4302544.357141/94‑1 (MQ=60) GCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAT < SRR4302544.2946246/94‑1 (MQ=60) GCGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCAT < SRR4302544.2946245/94‑1 (MQ=60) CGTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATG > SRR4302544.2178773/1‑94 (MQ=60) GTTGCCCTTGCGGTCAGTGCGCAGTTTATGCCACGCAATTTGTTATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGT < SRR4302544.3690285/94‑1 (MQ=60) GTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGT < SRR4302544.3690284/94‑1 (MQ=60) GTTGCCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGT > SRR4302544.3664488/1‑94 (MQ=60) tgcCCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTAC > SRR4302544.1483072/4‑94 (MQ=60) C‑CCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGC > SRR4302544.282685/1‑94 (MQ=60) C‑CCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGC > SRR4302544.1798725/1‑94 (MQ=60) C‑CCTTGCGGTCAGTGCGCAGGCTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTCTCAACGTGACTTGCCGGACGCCCATGTCCGC > SRR4302544.282686/1‑94 (MQ=60) CCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCC > SRR4302544.11003/1‑94 (MQ=60) CTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCG > SRR4302544.968275/1‑94 (MQ=60) | TCCTGTTCGTCGGCCCCGGAAATCAGTAACTGGCAGTTATCGCCCGCCAGCGTATCGGTGCCAATCAGCGCAAGGGCGCTTTTGGCGTTG‑CCTTGCGGTCAGTGCGCAGGTTATGCCACTCAATTTGTGATGAAAAAGTATTACACAGCGTTTCAACGTGGCTTGCCGGACGCGCATGTACGCCG > NC_000913/4139578‑4139762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |