Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1357	179.3	9500450	96.1%	9129932	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,185,057	C→T	D710D (GAC→GAT)	rpoC →	RNA polymerase beta prime subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,185,057	0	C	T	99.5%	756.5 / ‑5.4	215	D710D (GAC→GAT)	rpoC	RNA polymerase beta prime subunit
Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (97/117); total (98/117)
Fisher's exact test for biased strand distribution p-value = 4.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.52e-01

Only 100 of 219 total aligned reads displayed.

CAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT  >  NC_000913/4184967‑4185146

 aaaGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGt                                                                                        >  2:1943506/1‑93 (MQ=255)

  aaGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTc                                                                                       <  1:3216115/93‑1 (MQ=255)

  aaGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTc                                                                                       >  2:1236341/1‑93 (MQ=255)

   aGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCa                                                                                      <  1:2119036/93‑1 (MQ=255)

   aGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCa                                                                                      >  2:167933/1‑93 (MQ=255)

    gTTATCGATATCTTGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAg                                                                                     <  1:2222939/93‑1 (MQ=255)

    gTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAg                                                                                     <  2:807413/93‑1 (MQ=255)

    gTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAg                                                                                     <  2:4252390/93‑1 (MQ=255)

    attATCGATATCGGGGATGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAg                                                                                     <  1:2695824/92‑1 (MQ=255)

     ttATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAgg                                                                                    <  1:679953/93‑1 (MQ=255)

      tATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGa                                                                                   <  1:854650/93‑1 (MQ=255)

      tATCGATATCTGGGCGGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGa                                                                                   <  1:3816946/93‑1 (MQ=255)

        tCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAag                                                                                 <  2:1680521/93‑1 (MQ=255)

          gATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAagag                                                                               <  1:1918388/93‑1 (MQ=255)

           atatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAgaga                                                                              >  2:490629/1‑93 (MQ=255)

           atatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAgaga                                                                              <  1:4328660/93‑1 (MQ=255)

           atatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAgaga                                                                              <  1:3898076/93‑1 (MQ=255)

            tatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGaa                                                                             <  2:3295298/93‑1 (MQ=255)

            tatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGaa                                                                             >  2:3359364/1‑93 (MQ=255)

            tatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGaa                                                                             <  2:475979/93‑1 (MQ=255)

            tatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGaa                                                                             >  2:660065/1‑93 (MQ=255)

            tatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGaa                                                                             >  1:1092454/1‑93 (MQ=255)

            aatCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACAGTGATTAACCGTGATGGTCAGGAAGAGaa                                                                             <  1:3713386/92‑1 (MQ=255)

              tCTGGGCTGCGGCGACCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAACCCGTGATTAACCGTGATGGTCAGGAAGAGAAGc                                                                           <  2:215270/93‑1 (MQ=255)

                  ggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGt                                                                       <  1:3354895/93‑1 (MQ=255)

                   gCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGtt                                                                      <  2:847678/93‑1 (MQ=255)

                      gcggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTcc                                                                   >  2:2975874/1‑93 (MQ=255)

                       cggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCt                                                                  <  1:3891306/93‑1 (MQ=255)

                       cggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCt                                                                  >  2:4327044/1‑93 (MQ=255)

                       cggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCt                                                                  >  1:3465573/1‑93 (MQ=255)

                         gcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTc                                                                >  2:2840700/1‑93 (MQ=255)

                           gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCaa                                                              <  1:615990/93‑1 (MQ=255)

                           gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCaa                                                              >  1:2607354/1‑93 (MQ=255)

                           gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCaa                                                              >  2:2540539/1‑93 (MQ=255)

                           gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCaa                                                              >  1:4011183/1‑93 (MQ=255)

                            gtcGATCGTGTATACAAAGCGATGATGCACAACCTTCAACCTGAAACCGTGATTACCCGTCATGGTCGGGAATAGAAGCGGGTTTCCTTCAAc                                                             <  1:2717687/91‑1 (MQ=255)

                            aaCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAAc                                                             <  1:1695136/93‑1 (MQ=255)

                            aaCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAAc                                                             <  1:4263393/93‑1 (MQ=255)

                             aCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACa                                                            <  2:713836/93‑1 (MQ=255)

                             aCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACa                                                            <  2:1730614/93‑1 (MQ=255)

                               gATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGc                                                          <  2:621184/93‑1 (MQ=255)

                                aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCa                                                         <  1:3066652/93‑1 (MQ=255)

                                aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCa                                                         >  1:1011349/1‑93 (MQ=255)

                                aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCa                                                         >  2:1186589/1‑93 (MQ=255)

                                aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGCCAGGAAGAGAAGCGGGTTTCCTTCAACAGCa                                                         >  1:3947495/1‑93 (MQ=255)

                                 tCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCAt                                                        >  2:1304304/1‑93 (MQ=255)

                                 tCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCAt                                                        <  1:3035087/93‑1 (MQ=255)

                                  cGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATc                                                       <  1:4417527/93‑1 (MQ=255)

                                   gtgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCt                                                      <  2:4129910/93‑1 (MQ=255)

                                   gtgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCt                                                      >  1:952784/1‑93 (MQ=255)

                                   gtgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCt                                                      >  1:2638273/1‑93 (MQ=255)

                                      tATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACa                                                   <  1:78900/93‑1 (MQ=255)

                                       aTCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACat                                                  <  2:4496168/93‑1 (MQ=255)

                                         ccAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatga                                                <  1:1250988/93‑1 (MQ=255)

                                          cAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatgat                                               >  2:2014607/1‑93 (MQ=255)

                                             aGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGc                                            <  1:4683354/93‑1 (MQ=255)

                                              gCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGcc                                           >  1:2358715/1‑93 (MQ=255)

                                              gCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGcc                                           <  2:3678070/93‑1 (MQ=255)

                                              gCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGcc                                           >  2:900188/1‑93 (MQ=255)

                                                gatgatGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGa                                         <  2:4609177/93‑1 (MQ=255)

                                                gatgatGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGa                                         >  1:1232204/1‑93 (MQ=255)

                                                 atgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAc                                        <  1:1731813/93‑1 (MQ=255)

                                                 atgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAc                                        >  1:1880677/1‑93 (MQ=255)

                                                  tgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACt                                       <  2:3005552/93‑1 (MQ=255)

                                                  tgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACt                                       >  2:1104126/1‑93 (MQ=255)

                                                    atgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTcc                                     <  2:387457/93‑1 (MQ=255)

                                                       gATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGGGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGt                                  <  2:2217264/93‑1 (MQ=255)

                                                       gATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGt                                  >  2:1787879/1‑93 (MQ=255)

                                                       gATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGt                                  >  1:1195891/1‑93 (MQ=255)

                                                       gATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGt                                  <  2:2951823/93‑1 (MQ=255)

                                                         tAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgc                                >  2:4073539/1‑93 (MQ=255)

                                                         tAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgc                                <  1:692867/93‑1 (MQ=255)

                                                         tAACCTGCAAACTGAAACCGAAATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgc                                <  2:4333230/93‑1 (MQ=255)

                                                          aaCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgcg                               >  1:2978471/1‑93 (MQ=255)

                                                           aCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgcgg                              >  2:2782012/1‑92 (MQ=255)

                                                           aCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgcgc                              >  2:445847/1‑93 (MQ=255)

                                                            ccTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGcgcg                             <  2:1469125/93‑1 (MQ=255)

                                                              tGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTg                           >  2:4682137/1‑93 (MQ=255)

                                                                cAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGt                         <  1:2078678/93‑1 (MQ=255)

                                                                cAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGt                         <  1:540428/93‑1 (MQ=255)

                                                                 aaaCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGtt                        <  2:4085879/93‑1 (MQ=255)

                                                                 aaaCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGtt                        >  2:3937548/1‑93 (MQ=255)

                                                                  aaCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTc                       <  1:1580840/93‑1 (MQ=255)

                                                                  aaCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTc                       <  2:1626197/93‑1 (MQ=255)

                                                                   aCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCt                      <  1:2675014/93‑1 (MQ=255)

                                                                     tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                    >  1:2956390/1‑93 (MQ=255)

                                                                      gAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCg                   <  2:2279510/93‑1 (MQ=255)

                                                                         aCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGca                >  1:3396232/1‑93 (MQ=255)

                                                                            gTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATTGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAg             <  1:3615232/93‑1 (MQ=255)

                                                                            gTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAg             <  1:165418/93‑1 (MQ=255)

                                                                             tGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGa            <  1:763668/93‑1 (MQ=255)

                                                                              gATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTACGGCACAGAt           <  2:3055120/93‑1 (MQ=255)

                                                                               aTTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAtt          <  1:2564729/93‑1 (MQ=255)

                                                                                ttAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGTGCGTGGTTCTGCGGCACAGATTc         >  1:904375/1‑93 (MQ=255)

                                                                                ttAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTc         >  1:1170799/1‑93 (MQ=255)

                                                                                   aCCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTc      >  1:2773201/1‑93 (MQ=255)

                                                                                      gTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGc   >  1:317050/1‑93 (MQ=255)

                                                                                      gTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGc   <  2:2596667/93‑1 (MQ=255)

                                                                                       tGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCt  >  2:136584/1‑93 (MQ=255)

                                                                                       tGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCt  >  1:4214174/1‑93 (MQ=255)

CAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT  >  NC_000913/4184967‑4185146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT  >  NC_000913/4184965‑4185150

AACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATG                                                                                              <  SRR4302544.742789/94‑1 (MQ=60)

AACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATG                                                                                              <  SRR4302544.2419172/94‑1 (MQ=60)

 ACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGG                                                                                             >  SRR4302544.4651011/1‑94 (MQ=60)

 ACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGG                                                                                             <  SRR4302544.2028578/94‑1 (MQ=60)

  CAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGT                                                                                            >  SRR4302544.778903/1‑94 (MQ=60)

  CAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGT                                                                                            >  SRR4302544.523103/1‑94 (MQ=60)

    AAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCA                                                                                          <  SRR4302544.3246798/94‑1 (MQ=60)

     AGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAG                                                                                         <  SRR4302544.2139381/94‑1 (MQ=60)

      GTTATCGATATCTTGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGG                                                                                        <  SRR4302544.2243851/94‑1 (MQ=60)

      ATTATCGATATCGGGGATGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGG                                                                                        <  SRR4302544.2721705/94‑1 (MQ=60)

       TTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGA                                                                                       >  SRR4302544.3179615/1‑94 (MQ=60)

       TTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGA                                                                                       >  SRR4302544.3368735/1‑94 (MQ=60)

       TTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGA                                                                                       <  SRR4302544.686704/94‑1 (MQ=60)

        TATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAA                                                                                      <  SRR4302544.863104/94‑1 (MQ=60)

        TATCGATATCTGGGCGGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAA                                                                                      <  SRR4302544.3854783/94‑1 (MQ=60)

         ATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAG                                                                                     <  SRR4302544.2739612/94‑1 (MQ=60)

           CGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAGCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAG                                                                                   <  SRR4302544.2138053/94‑1 (MQ=60)

           CGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAG                                                                                   >  SRR4302544.4358166/1‑94 (MQ=60)

            GATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGA                                                                                  <  SRR4302544.1936923/94‑1 (MQ=60)

            GATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGA                                                                                  <  SRR4302544.320312/94‑1 (MQ=60)

             ATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAA                                                                                 <  SRR4302544.4372740/94‑1 (MQ=60)

             ATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAA                                                                                 >  SRR4302544.1103326/1‑94 (MQ=60)

             ATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAA                                                                                 <  SRR4302544.3936794/94‑1 (MQ=60)

              TATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAG                                                                                <  SRR4302544.3750321/94‑1 (MQ=60)

              TATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAG                                                                                <  SRR4302544.183348/94‑1 (MQ=60)

              TATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAG                                                                                >  SRR4302544.4046539/1‑94 (MQ=60)

              TATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAG                                                                                <  SRR4302544.2707840/94‑1 (MQ=60)

              AATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACAGTGATTAACCGTGATGGTCAGGAAGAGAAG                                                                                <  SRR4302544.3750322/94‑1 (MQ=60)

                  TGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGG                                                                            >  SRR4302544.2652677/1‑94 (MQ=60)

                  TGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGG                                                                            >  SRR4302544.1136785/1‑94 (MQ=60)

                    GGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTT                                                                          <  SRR4302544.3386908/94‑1 (MQ=60)

                    GGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTT                                                                          <  SRR4302544.2034725/94‑1 (MQ=60)

                       TGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCC                                                                       >  SRR4302544.825911/1‑94 (MQ=60)

                        GCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCT                                                                      >  SRR4302544.3498629/1‑94 (MQ=60)

                        GCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCT                                                                      <  SRR4302544.1617056/94‑1 (MQ=60)

                        GCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCT                                                                      >  SRR4302544.3755038/1‑94 (MQ=60)

                         CGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTT                                                                     >  SRR4302544.713019/1‑94 (MQ=60)

                         CGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTT                                                                     <  SRR4302544.3929960/94‑1 (MQ=60)

                         CGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTT                                                                     >  SRR4302544.1685902/1‑94 (MQ=60)

                            CGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAA                                                                  >  SRR4302544.2632396/1‑94 (MQ=60)

                            CGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAA                                                                  >  SRR4302544.4051084/1‑94 (MQ=60)

                             GAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAAC                                                                 <  SRR4302544.622035/94‑1 (MQ=60)

                              AACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACA                                                                <  SRR4302544.4306880/94‑1 (MQ=60)

                              AACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACA                                                                <  SRR4302544.1711860/94‑1 (MQ=60)

                              AACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACA                                                                <  SRR4302544.2743849/94‑1 (MQ=60)

                              AACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACA                                                                <  SRR4302544.2743848/94‑1 (MQ=60)

                                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGTTTTCCTTCAACAGCA                                                             >  SRR4302544.4269848/1‑94 (MQ=60)

                                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                             >  SRR4302544.359111/1‑94 (MQ=60)

                                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                             >  SRR4302544.1021425/1‑94 (MQ=60)

                                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                             >  SRR4302544.3886657/1‑94 (MQ=60)

                                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                             >  SRR4302544.1365438/1‑94 (MQ=60)

                                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGCCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                             >  SRR4302544.3986720/1‑94 (MQ=60)

                                  ATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCAT                                                            <  SRR4302544.3095888/94‑1 (MQ=60)

                                   TCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATC                                                           <  SRR4302544.3064151/94‑1 (MQ=60)

                                    CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                          <  SRR4302544.3420343/94‑1 (MQ=60)

                                    CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                          >  SRR4302544.962154/1‑94 (MQ=60)

                                    CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                          <  SRR4302544.4462112/94‑1 (MQ=60)

                                    CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                          >  SRR4302544.2663559/1‑94 (MQ=60)

                                    CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                          <  SRR4302544.2191976/94‑1 (MQ=60)

                                        TATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACAT                                                      <  SRR4302544.79658/94‑1 (MQ=60)

                                           CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGAT                                                   <  SRR4302544.3930601/94‑1 (MQ=60)

                                           CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGAT                                                   <  SRR4302544.1044305/94‑1 (MQ=60)

                                           CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGAT                                                   <  SRR4302544.1263301/94‑1 (MQ=60)

                                              AAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGC                                                <  SRR4302544.1254346/94‑1 (MQ=60)

                                              AAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGC                                                <  SRR4302544.560944/94‑1 (MQ=60)

                                               AGCGATGATGGATAACCTGCAAACTGAATCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCC                                               <  SRR4302544.4729650/94‑1 (MQ=60)

                                               AGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCC                                               >  SRR4302544.2381049/1‑94 (MQ=60)

                                                 CGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGA                                             >  SRR4302544.2979127/1‑94 (MQ=60)

                                                 CGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGA                                             >  SRR4302544.1244395/1‑94 (MQ=60)

                                                  GATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAC                                            >  SRR4302544.1898860/1‑94 (MQ=60)

                                                   ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                           >  SRR4302544.396372/1‑94 (MQ=60)

                                                   ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                           >  SRR4302544.3578886/1‑94 (MQ=60)

                                                   ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                           <  SRR4302544.1748791/94‑1 (MQ=60)

                                                   ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                           >  SRR4302544.2615282/1‑94 (MQ=60)

                                                    TGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTC                                          >  SRR4302544.1007068/1‑94 (MQ=60)

                                                      ATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCG                                        <  SRR4302544.190399/94‑1 (MQ=60)

                                                      ATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCG                                        <  SRR4302544.928305/94‑1 (MQ=60)

                                                        GGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAGCAGCATCTACATGATGGCCGACTCCGGT                                      <  SRR4302544.323046/94‑1 (MQ=60)

                                                        GGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGT                                      >  SRR4302544.1207748/1‑94 (MQ=60)

                                                        GGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGT                                      <  SRR4302544.4189273/94‑1 (MQ=60)

                                                        GGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGT                                      >  SRR4302544.968913/1‑94 (MQ=60)

                                                         GATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTG                                     <  SRR4302544.760155/94‑1 (MQ=60)

                                                           TAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCG                                   <  SRR4302544.2491979/94‑1 (MQ=60)

                                                           TAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCG                                   <  SRR4302544.699769/94‑1 (MQ=60)

                                                           TAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCG                                   >  SRR4302544.3007036/1‑94 (MQ=60)

                                                            AACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCATTCAACAGCATCTACATGATGGCCGACTCCGGTGCGC                                  >  SRR4302544.3982608/1‑94 (MQ=60)

                                                                TGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGG                              >  SRR4302544.625648/1‑94 (MQ=60)

                                                                  caatgggaacCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                            <  SRR4302544.1218853/84‑1 (MQ=60)

                                                                  CAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                            <  SRR4302544.2098658/94‑1 (MQ=60)

                                                                  CAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                            <  SRR4302544.1218854/94‑1 (MQ=60)

                                                                  CAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                            <  SRR4302544.545753/94‑1 (MQ=60)

                                                                    AACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCT                          >  SRR4302544.694942/1‑94 (MQ=60)

                                                                    AACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCT                          <  SRR4302544.1596463/94‑1 (MQ=60)

                                                                     ACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTG                         <  SRR4302544.2700657/94‑1 (MQ=60)

                                                                     ACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGCGCGCGTGGTTCTG                         <  SRR4302544.1381451/94‑1 (MQ=60)

                                                                     ACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGCGCGCGTGGTTCTG                         <  SRR4302544.300691/94‑1 (MQ=60)

                                                                      CTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGC                        >  SRR4302544.2984781/1‑94 (MQ=60)

                                                                        GAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGG                      >  SRR4302544.4690718/1‑94 (MQ=60)

                                                                         AAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGC                     >  SRR4302544.891128/1‑94 (MQ=60)

                                                                          AACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCA                    >  SRR4302544.3428711/1‑94 (MQ=60)

                                                                          AACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCA                    <  SRR4302544.4441698/94‑1 (MQ=60)

                                                                            CCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACA                  <  SRR4302544.3440567/94‑1 (MQ=60)

                                                                             CGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAG                 >  SRR4302544.3094934/1‑94 (MQ=60)

                                                                              GTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATTGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGA                <  SRR4302544.3650860/94‑1 (MQ=60)

                                                                              GTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGA                <  SRR4302544.167041/94‑1 (MQ=60)

                                                                              GTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGA                >  SRR4302544.3017198/1‑94 (MQ=60)

                                                                               TGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAT               >  SRR4302544.1733738/1‑94 (MQ=60)

                                                                               TGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAT               <  SRR4302544.771110/94‑1 (MQ=60)

                                                                                 ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGTGCGTGGTTCTGCGGCACAGATTC             >  SRR4302544.913327/1‑94 (MQ=60)

                                                                                 ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC             <  SRR4302544.2589368/94‑1 (MQ=60)

                                                                                 ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC             <  SRR4302544.1926047/94‑1 (MQ=60)

                                                                                 ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC             <  SRR4302544.2589369/94‑1 (MQ=60)

                                                                                 ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC             >  SRR4302544.1182483/1‑94 (MQ=60)

                                                                                   TAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGT           >  SRR4302544.1191101/1‑94 (MQ=60)

                                                                                    AACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTC          >  SRR4302544.2799872/1‑94 (MQ=60)

                                                                                     ACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA         <  SRR4302544.2676678/94‑1 (MQ=60)

                                                                                       CGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGC       >  SRR4302544.320348/1‑94 (MQ=60)

                                                                                        GTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT      >  SRR4302544.2364394/1‑94 (MQ=60)

                                                                                        GTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT      >  SRR4302544.4256683/1‑94 (MQ=60)

                                                                                          GATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTG    >  SRR4302544.3899866/1‑94 (MQ=60)

                                                                                            TGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT  <  SRR4302544.3047318/94‑1 (MQ=60)

                                                                                            TGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT  >  SRR4302544.3374475/1‑94 (MQ=60)

AACAAAGTTATCGATATCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT  >  NC_000913/4184965‑4185150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`