Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1357 179.3 9500450 96.1% 9129932 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,194,577 2 bp→GC coding (97‑98/774 nt) yjaD → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,194,5770CG100.0% 412.9 / NA 129R33A (CGG→GCG) yjaDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (31/98);  total (31/98)
*NC_0009134,194,5780GC100.0% 412.9 / NA 129R33A (CGG→GCG) yjaDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (31/98);  total (31/98)

Only 100 of 132 total aligned reads displayed.

TATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAACGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGG  >  NC_000913/4194489‑4194663
                                                                                        ||                                                                                     
tataATTGAAAAATTAGATCACGGCTGGTGGGTCGTTAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGGATTGCCATATGGGGAAGGGGc                                                                                    >  2:3963885/1‑93 (MQ=255)
    aTTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAAt                                                                                <  2:1918878/93‑1 (MQ=255)
      tGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCAGAAGGGAGAATTGCCATATGGCGAAGCGGCAAAttt                                                                              <  1:2758557/93‑1 (MQ=255)
        aaaaaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCg                                                                            <  1:2558392/93‑1 (MQ=255)
         aaaaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGa                                                                           <  1:2533202/93‑1 (MQ=255)
           aaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATc                                                                         <  1:1380733/93‑1 (MQ=255)
           aaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATc                                                                         <  2:4490390/93‑1 (MQ=255)
            aTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCt                                                                        <  2:4298857/93‑1 (MQ=255)
            aTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCt                                                                        >  2:4639185/1‑93 (MQ=255)
            aTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCt                                                                        <  1:938847/93‑1 (MQ=255)
            aTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCt                                                                        <  1:1978604/93‑1 (MQ=255)
             ttAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCtt                                                                       <  2:1041704/93‑1 (MQ=255)
              tAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtg                                                                      <  2:1587696/93‑1 (MQ=255)
               aGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgt                                                                     <  2:1874582/93‑1 (MQ=255)
               aGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgg                                                                     >  1:2986225/1‑92 (MQ=255)
                 aTCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATCTGGCGAAGCGGCAAATTTCGATCTTgggg                                                                   >  2:1067538/1‑93 (MQ=255)
                 aTCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTgg                                                                   <  1:1379841/93‑1 (MQ=255)
                  tCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTggg                                                                  >  2:1830361/1‑93 (MQ=255)
                   cACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGt                                                                 <  1:2768598/93‑1 (MQ=255)
                   cACGGCGGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGt                                                                 <  1:2768597/93‑1 (MQ=255)
                    aCGGCTGGTGTGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTc                                                                <  1:4279654/93‑1 (MQ=255)
                    aCGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTc                                                                >  2:3502659/1‑93 (MQ=255)
                     cGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCa                                                               <  2:694299/93‑1 (MQ=255)
                     cGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCa                                                               <  1:768805/93‑1 (MQ=255)
                      ggCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATAATGAGAAGCGGCAAATTTCGATCTTGTGGGGCAg                                                              >  2:2983454/1‑93 (MQ=255)
                       gCTGGTGGGTCGGCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgc                                                             <  1:2587197/93‑1 (MQ=255)
                           gtggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgcgcgc                                                         >  1:3020455/1‑93 (MQ=255)
                            tggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCa                                                        <  2:4262355/93‑1 (MQ=255)
                             gggTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCAc                                                       <  2:4610725/93‑1 (MQ=255)
                              ggTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACt                                                      <  1:3457511/93‑1 (MQ=255)
                                tcgtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGGACTAc                                                    >  2:2845270/1‑93 (MQ=255)
                                 cgtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACa                                                   >  1:1387038/1‑93 (MQ=255)
                                   tcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaaa                                                 >  1:1869049/1‑93 (MQ=255)
                                   tcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaaa                                                 <  2:4361683/93‑1 (MQ=255)
                                    cAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAAt                                                <  2:3042024/93‑1 (MQ=255)
                                     aGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATc                                               <  1:3819262/93‑1 (MQ=255)
                                     aGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATc                                               <  2:4644115/93‑1 (MQ=255)
                                     aGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATATTGTGGGTCAGCGCGCACTACacacc                                               >  1:3474993/1‑89 (MQ=255)
                                      gCCATTAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCg                                              >  1:1640331/1‑93 (MQ=255)
                                      gCCATTAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAACCg                                              >  1:1640332/1‑93 (MQ=255)
                                         aTGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCg                                           >  2:3028559/1‑93 (MQ=255)
                                           gAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGaa                                         <  1:4507618/93‑1 (MQ=255)
                                            aaCAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAt                                        <  1:3628286/93‑1 (MQ=255)
                                            aaCAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAt                                        <  2:2387975/93‑1 (MQ=255)
                                            aaCAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAt                                        <  1:3628285/93‑1 (MQ=255)
                                            aaCAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCCATCTTGTGGGTCAGCGCGCCATACAAATCGGCGCAt                                        >  2:3526049/1‑93 (MQ=255)
                                              cAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATgg                                      <  1:1749489/93‑1 (MQ=255)
                                              cAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATgg                                      <  2:4229774/93‑1 (MQ=255)
                                              cAAAAATGATGGTTGCCGAAGGGAGAATTGCCAGATGGCGAAGCGGCAAATTGCGATCTTGTGGGTCAGCGCGCACTACAAACCGGCGAATgg                                      <  2:655517/93‑1 (MQ=255)
                                                aaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGcg                                    >  1:2602955/1‑92 (MQ=255)
                                                aaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCa                                    <  1:2867552/93‑1 (MQ=255)
                                                aaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCa                                    <  1:2624089/93‑1 (MQ=255)
                                                 aaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAg                                   <  1:95658/93‑1 (MQ=255)
                                                 aaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAg                                   <  2:579168/93‑1 (MQ=255)
                                                   aTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAggg                                 <  1:2011720/93‑1 (MQ=255)
                                                   aTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAggg                                 >  1:4447900/1‑93 (MQ=255)
                                                   aTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAggg                                 >  1:4186919/1‑93 (MQ=255)
                                                   aTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAggg                                 <  1:3920441/93‑1 (MQ=255)
                                                    ttATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgggg                                <  2:4382694/93‑1 (MQ=255)
                                                    ttATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgggg                                <  1:4531263/93‑1 (MQ=255)
                                                       tGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGaa                             >  2:2342623/1‑93 (MQ=255)
                                                       tGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGaa                             <  2:858251/93‑1 (MQ=255)
                                                         gTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAAcc                           <  1:3977180/93‑1 (MQ=255)
                                                         gTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAAcc                           <  1:2450264/93‑1 (MQ=255)
                                                           tGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTg                         <  2:3666288/93‑1 (MQ=255)
                                                           tGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTg                         <  2:1324743/93‑1 (MQ=255)
                                                           tGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTg                         <  2:3182011/93‑1 (MQ=255)
                                                           tGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTg                         >  1:523894/1‑93 (MQ=255)
                                                             ccGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGtt                       <  2:247984/93‑1 (MQ=255)
                                                             ccGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGtt                       <  2:1551312/93‑1 (MQ=255)
                                                             ccGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATCGCAGGGGGAACCTGtt                       <  1:3964790/93‑1 (MQ=255)
                                                             ccGAAGCGAGAATTGCCATATGGAGAGGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGtt                       <  2:247983/93‑1 (MQ=255)
                                                                aaGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTgg                    <  2:2415660/93‑1 (MQ=255)
                                                                 aGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGt                   <  2:842920/93‑1 (MQ=255)
                                                                   ggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTa                 <  2:3229713/93‑1 (MQ=255)
                                                                   ggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTa                 <  2:331176/93‑1 (MQ=255)
                                                                   ggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTa                 <  2:1990701/93‑1 (MQ=255)
                                                                   ggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTa                 <  2:1369207/93‑1 (MQ=255)
                                                                    gagaATTGCCATATGGCGAAGCGTCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAg                <  2:2818267/93‑1 (MQ=255)
                                                                     agaATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGt               <  2:291502/93‑1 (MQ=255)
                                                                     agaATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGt               <  1:1544173/93‑1 (MQ=255)
                                                                      gaATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTa              <  1:1994535/93‑1 (MQ=255)
                                                                       aaTTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTac             <  2:1189071/93‑1 (MQ=255)
                                                                        aTTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTaca            >  1:1344376/1‑93 (MQ=255)
                                                                         ttGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaa           <  2:1072206/93‑1 (MQ=255)
                                                                          tGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaac          >  1:1925208/1‑93 (MQ=255)
                                                                           gCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaaca         <  2:581296/93‑1 (MQ=255)
                                                                           gCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaaca         <  2:581429/93‑1 (MQ=255)
                                                                           gCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaaca         <  1:2113755/93‑1 (MQ=255)
                                                                             cATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagc       <  2:3824667/93‑1 (MQ=255)
                                                                             cATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagc       <  2:2329829/93‑1 (MQ=255)
                                                                             cATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagc       <  2:863464/93‑1 (MQ=255)
                                                                              ctatGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTGCAAcagca      <  2:645857/92‑1 (MQ=255)
                                                                              atatGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagca      <  1:3554459/93‑1 (MQ=255)
                                                                               tatGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGCACCTGTTTGGTTAGTACAAcaggag     >  1:3283514/1‑93 (MQ=255)
                                                                               tatGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagcag     <  2:4177613/93‑1 (MQ=255)
                                                                                atGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACagcagc    <  1:458738/93‑1 (MQ=255)
                                                                                atGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACagcagc    >  1:2662295/1‑93 (MQ=255)
                                                                                 tGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAgcg   <  2:3880433/93‑1 (MQ=255)
                                                                                 tGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAgcg   <  1:2665092/93‑1 (MQ=255)
                                                                                        ||                                                                                     
TATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAACGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGG  >  NC_000913/4194489‑4194663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑CGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGG  >  NC_000913/4194484‑4194663
                                                                                              |                                                                                      
GATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑G                                                                                        <  SRR4302544.4338197/94‑1 (MQ=60)
   CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGG                                                                                      <  SRR4302544.4656000/94‑1 (MQ=60)
   CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGG                                                                                      >  SRR4302544.3377148/1‑94 (MQ=60)
   CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGG                                                                                      >  SRR4302544.3207803/1‑94 (MQ=60)
     TATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCA                                                                                   <  SRR4302544.4196383/94‑1 (MQ=60)
     TATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCA                                                                                   <  SRR4302544.293874/94‑1 (MQ=60)
           TGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCAGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTC                                                                             <  SRR4302544.2785100/94‑1 (MQ=60)
            GAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCCAATTTCG                                                                            >  SRR4302544.3430609/1‑94 (MQ=60)
             AAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGA                                                                           <  SRR4302544.2582961/94‑1 (MQ=60)
              AAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGAT                                                                          <  SRR4302544.2557534/94‑1 (MQ=60)
                AATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCT                                                                        <  SRR4302544.1394519/94‑1 (MQ=60)
                 ATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTT                                                                       <  SRR4302544.948094/94‑1 (MQ=60)
                 ATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTT                                                                       <  SRR4302544.1997829/94‑1 (MQ=60)
                   TAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGG                                                                     >  SRR4302544.3014871/1‑94 (MQ=60)
                     GATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGG                                                                   <  SRR4302544.948138/94‑1 (MQ=60)
                      ATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGG                                                                  <  SRR4302544.1393619/94‑1 (MQ=60)
                        CACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTC                                                                <  SRR4302544.2795234/94‑1 (MQ=60)
                        CACGGCGGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTC                                                                <  SRR4302544.2795233/94‑1 (MQ=60)
                         ACGGCTGGTGTGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCA                                                               <  SRR4302544.4323360/94‑1 (MQ=60)
                          CGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAG                                                              <  SRR4302544.776291/94‑1 (MQ=60)
                            GCTGGTGGGTCGGCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCG                                                            <  SRR4302544.2612082/94‑1 (MQ=60)
                               GGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGC                                                         >  SRR4302544.3049405/1‑94 (MQ=60)
                                   GGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTA                                                     <  SRR4302544.3490510/94‑1 (MQ=60)
                                     TCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACA                                                   >  SRR4302544.1400888/1‑94 (MQ=60)
                                       GTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAA                                                 >  SRR4302544.1887113/1‑94 (MQ=60)
                                         CAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATATTGTGGGTCAGCGCGCACTACAcacc                                               >  SRR4302544.3508134/1‑90 (MQ=60)
                                          AGCCATTAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCG                                              >  SRR4302544.1656495/1‑94 (MQ=60)
                                          AGCCATTAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAACCG                                              >  SRR4302544.1656496/1‑94 (MQ=60)
                                          AGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCG                                              <  SRR4302544.3857121/94‑1 (MQ=60)
                                           cccacGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGTAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGG                                             <  SRR4302544.1730029/89‑1 (MQ=60)
                                           GCCATGAACAAAAATTATGCTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGG                                             <  SRR4302544.4663736/94‑1 (MQ=60)
                                             CATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCG                                           >  SRR4302544.4031013/1‑94 (MQ=60)
                                                GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                        <  SRR4302544.196993/94‑1 (MQ=60)
                                                GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                        <  SRR4302544.4552813/94‑1 (MQ=60)
                                                 AACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATG                                       <  SRR4302544.3664434/94‑1 (MQ=60)
                                                 AACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATG                                       <  SRR4302544.3664433/94‑1 (MQ=60)
                                                   CAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGC                                     <  SRR4302544.1766614/94‑1 (MQ=60)
                                                    AAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCG                                    >  SRR4302544.2627970/1‑94 (MQ=60)
                                                    AAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCG                                    >  SRR4302544.2627969/1‑94 (MQ=60)
                                                     AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                   <  SRR4302544.2649250/94‑1 (MQ=60)
                                                     AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                   <  SRR4302544.2895232/94‑1 (MQ=60)
                                                      AAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGG                                  <  SRR4302544.96537/94‑1 (MQ=60)
                                                       AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                 >  SRR4302544.4492714/1‑94 (MQ=60)
                                                       AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                 <  SRR4302544.1701906/94‑1 (MQ=60)
                                                       AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                 >  SRR4302544.4228385/1‑94 (MQ=60)
                                                        ATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGG                                <  SRR4302544.2031271/94‑1 (MQ=60)
                                                        ATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGG                                <  SRR4302544.3959381/94‑1 (MQ=60)
                                                         TTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGG                               <  SRR4302544.4576590/94‑1 (MQ=60)
                                                         TTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGG                               <  SRR4302544.3936644/94‑1 (MQ=60)
                                                              GTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCT                          <  SRR4302544.2473639/94‑1 (MQ=60)
                                                              GTTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCT                          <  SRR4302544.4016755/94‑1 (MQ=60)
                                                               TTGCCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTG                         >  SRR4302544.529078/1‑94 (MQ=60)
                                                                  CCGAAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATCGCAGGGGGAACCTGTTT                      <  SRR4302544.4004230/94‑1 (MQ=60)
                                                                     AAGGGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGT                   <  SRR4302544.2576182/94‑1 (MQ=60)
                                                                        GGAGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAG                <  SRR4302544.3602214/94‑1 (MQ=60)
                                                                          AGAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTA              <  SRR4302544.1559546/94‑1 (MQ=60)
                                                                           GAATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTAC             <  SRR4302544.2013901/94‑1 (MQ=60)
                                                                            AATTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACA            >  SRR4302544.1357676/1‑94 (MQ=60)
                                                                              TTGCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAC          >  SRR4302544.1943832/1‑94 (MQ=60)
                                                                              TTGCAATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAC          <  SRR4302544.454796/94‑1 (MQ=60)
                                                                                GCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAG        >  SRR4302544.2693417/1‑94 (MQ=60)
                                                                                GCCATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAG        <  SRR4302544.2134069/94‑1 (MQ=60)
                                                                                GCCATATGGCGAA‑GCGGAAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAG        <  SRR4302544.2047439/94‑1 (MQ=60)
                                                                                   ATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGCACCTGTTTGGTTAGTACAACAGGAG     >  SRR4302544.3314801/1‑94 (MQ=60)
                                                                                   ATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAG     <  SRR4302544.1454827/94‑1 (MQ=60)
                                                                                   ATATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAG     <  SRR4302544.3588514/94‑1 (MQ=60)
                                                                                    TATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGC    >  SRR4302544.2687818/1‑94 (MQ=60)
                                                                                     ATGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCG   <  SRR4302544.463250/94‑1 (MQ=60)
                                                                                     ATGGCGAA‑GCGGCAAACTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCG   <  SRR4302544.2865535/94‑1 (MQ=60)
                                                                                      TGGCGAA‑GCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGG  <  SRR4302544.2690645/94‑1 (MQ=60)
                                                                                              |                                                                                      
GATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAA‑CGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGG  >  NC_000913/4194484‑4194663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑