Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,765,691	A→G	V340A (GTG→GCG)	ydiJ ←	putative oxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,765,691	0	A	G	100.0%	748.6 / NA	231	V340A (GTG→GCG)	ydiJ	putative oxidase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (120/111); total (120/111)

Only 100 of 236 total aligned reads displayed.

GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGC  >  NC_000913/1765601‑1765780

gcACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGcgca                                                                                         <  2:3398997/93‑1 (MQ=255)

  ccaGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCAGCTCTTGGTCAGGCGCATc                                                                                       <  1:455254/92‑1 (MQ=255)

  acaGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATc                                                                                       <  2:5904021/93‑1 (MQ=255)

  acaGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATc                                                                                       <  2:2835927/93‑1 (MQ=255)

     gagTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGt                                                                                    >  2:2332071/1‑93 (MQ=255)

      agTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTa                                                                                   <  2:2577052/93‑1 (MQ=255)

      agTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTa                                                                                   <  1:2363710/93‑1 (MQ=255)

       gTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTaa                                                                                  >  1:999946/1‑93 (MQ=255)

         gCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCATATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATc                                                                                >  2:4704708/1‑93 (MQ=255)

            tttACCCGCTCGTCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAAc                                                                             <  1:2986653/93‑1 (MQ=255)

            tttACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAAc                                                                             <  2:920919/93‑1 (MQ=255)

             ttACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACt                                                                            <  1:796135/93‑1 (MQ=255)

               aCCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTAAGGCGCATCGGTAATCAACTCg                                                                          >  2:6195518/1‑93 (MQ=255)

                cccGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGc                                                                         >  2:5555697/1‑93 (MQ=255)

                 ccGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCt                                                                        >  2:3833163/1‑93 (MQ=255)

                   gCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGa                                                                      <  2:3144937/93‑1 (MQ=255)

                   gCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGa                                                                      >  1:3553505/1‑93 (MQ=255)

                   gCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGa                                                                      <  2:6591085/93‑1 (MQ=255)

                    cTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGAc                                                                     <  2:2231397/93‑1 (MQ=255)

                     tcatcaATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACg                                                                    >  2:5229202/1‑93 (MQ=255)

                      catcaATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACgg                                                                   >  1:3917087/1‑93 (MQ=255)

                      catcaATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACgg                                                                   >  1:6587918/1‑93 (MQ=255)

                       atcaatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGa                                                                  >  2:3248241/1‑93 (MQ=255)

                       atcaatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGa                                                                  >  1:3276402/1‑93 (MQ=255)

                        tcaatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGaa                                                                 <  2:2097161/93‑1 (MQ=255)

                         caatcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAAt                                                                <  2:2764555/93‑1 (MQ=255)

                            tcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGcc                                                             >  2:428194/1‑93 (MQ=255)

                            tcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGcc                                                             <  1:5101012/93‑1 (MQ=255)

                            tcaGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCCGACGGAATGcc                                                             >  1:558808/1‑93 (MQ=255)

                             caGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCa                                                            <  1:4659120/93‑1 (MQ=255)

                              aGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAg                                                           <  2:2617546/93‑1 (MQ=255)

                               gcgcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGa                                                          >  2:1191746/1‑93 (MQ=255)

                                cgcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGAc                                                         <  1:6647384/93‑1 (MQ=255)

                                 gcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACa                                                        >  1:2686061/1‑93 (MQ=255)

                                 gcCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACa                                                        <  1:3094806/93‑1 (MQ=255)

                                  ccTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACaa                                                       <  1:4540153/93‑1 (MQ=255)

                                  ccTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACaa                                                       >  1:2272397/1‑93 (MQ=255)

                                  ccTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACaa                                                       <  1:3252536/93‑1 (MQ=255)

                                   cTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCCTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAat                                                      >  1:1587227/1‑93 (MQ=255)

                                    tcatcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATTCCAGACGata                                                     >  1:5394107/1‑93 (MQ=255)

                                    tcatcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAata                                                     >  2:554339/1‑93 (MQ=255)

                                      atcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGTCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATc                                                   <  2:3558913/93‑1 (MQ=255)

                                      atcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATc                                                   >  1:3601387/1‑93 (MQ=255)

                                      atcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATc                                                   >  1:178728/1‑93 (MQ=255)

                                       tcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCt                                                  >  2:5670608/1‑93 (MQ=255)

                                       tcatcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCt                                                  <  2:3979086/93‑1 (MQ=255)

                                         atcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTc                                                <  2:2506446/93‑1 (MQ=255)

                                          tcaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTcc                                               <  2:4523664/93‑1 (MQ=255)

                                          acaCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTcc                                               <  2:1816154/92‑1 (MQ=255)

                                           caCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTccc                                              >  1:1912262/1‑93 (MQ=255)

                                            aCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcg                                             >  1:986730/1‑93 (MQ=255)

                                            aCCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcg                                             <  1:1356385/93‑1 (MQ=255)

                                              cAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCcgcg                                           >  1:1174926/1‑93 (MQ=255)

                                               aGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCgcgc                                          >  2:4421230/1‑93 (MQ=255)

                                               aGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCgcgc                                          >  2:721761/1‑93 (MQ=255)

                                                gCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGcc                                         >  1:1743129/1‑93 (MQ=255)

                                                gCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGcc                                         <  1:2873260/93‑1 (MQ=255)

                                                  aaaTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAg                                       >  1:4415724/1‑93 (MQ=255)

                                                   aaTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGa                                      <  1:1162206/93‑1 (MQ=255)

                                                    aTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAt                                     <  2:4613280/93‑1 (MQ=255)

                                                    aTTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAt                                     <  1:1477780/93‑1 (MQ=255)

                                                     ttCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAtt                                    >  2:685999/1‑93 (MQ=255)

                                                      tCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTc                                   <  2:3538421/93‑1 (MQ=255)

                                                       ccACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCa                                  >  1:606184/1‑93 (MQ=255)

                                                       ccACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCa                                  <  2:1945736/93‑1 (MQ=255)

                                                         acaATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGc                                >  2:1834453/1‑93 (MQ=255)

                                                          caATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCa                               >  1:3775974/1‑93 (MQ=255)

                                                            aTGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACt                             >  1:2419857/1‑93 (MQ=255)

                                                            aTGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACt                             >  2:2201614/1‑93 (MQ=255)

                                                            aTGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACt                             <  1:1512998/93‑1 (MQ=255)

                                                             tGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtt                            <  2:1566271/93‑1 (MQ=255)

                                                             tGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtt                            >  1:2930393/1‑93 (MQ=255)

                                                              gTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACttt                           <  2:1237205/93‑1 (MQ=255)

                                                               ttCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtttt                          >  2:6356225/1‑93 (MQ=255)

                                                               ttCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtttt                          >  2:5001784/1‑93 (MQ=255)

                                                               ttCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACtttt                          >  1:3074094/1‑93 (MQ=255)

                                                                  aGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAg                       >  1:4080831/1‑93 (MQ=255)

                                                                   acccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGt                      <  1:5828997/92‑1 (MQ=255)

                                                                     ccGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTcc                    <  2:3176340/93‑1 (MQ=255)

                                                                       gAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAc                  >  2:4097590/1‑93 (MQ=255)

                                                                       gAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAc                  >  2:4850365/1‑93 (MQ=255)

                                                                       gAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAc                  >  1:2599674/1‑93 (MQ=255)

                                                                        aGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc                 <  2:2113310/93‑1 (MQ=255)

                                                                        aGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc                 <  1:2102918/93‑1 (MQ=255)

                                                                        aGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc                 <  1:2200195/93‑1 (MQ=255)

                                                                        aGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAcc                 <  2:1747096/93‑1 (MQ=255)

                                                                         gCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCg                >  2:4922130/1‑93 (MQ=255)

                                                                           aTCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtc              >  1:6184326/1‑93 (MQ=255)

                                                                           aTCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtc              >  1:2660612/1‑93 (MQ=255)

                                                                            tctcTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtct             >  1:4823373/1‑93 (MQ=255)

                                                                            tctcTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtct             >  2:2948888/1‑93 (MQ=255)

                                                                             ctctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtctc            >  1:5747367/1‑93 (MQ=255)

                                                                             ctctTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGtctc            <  2:3359560/93‑1 (MQ=255)

                                                                              tctTGGTCAGTCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTctct           <  1:2798932/93‑1 (MQ=255)

                                                                                ttGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTAc         >  2:2696146/1‑93 (MQ=255)

                                                                                  ggTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTAcca       >  1:579203/1‑92 (MQ=255)

                                                                                  ggTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCg       <  1:4932852/93‑1 (MQ=255)

                                                                                     cAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGaaa    <  2:5953243/93‑1 (MQ=255)

                                                                                     cAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGaaa    <  1:6359927/93‑1 (MQ=255)

                                                                                       ggCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAgc  >  2:227797/1‑93 (MQ=255)

GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGC  >  NC_000913/1765601‑1765780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCC  >  NC_000913/1765598‑1765784

CGCGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCG                                                                                               >  SRR4302536.1473510/1‑94 (MQ=60)

 GCGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGC                                                                                              >  SRR4302536.167673/1‑94 (MQ=60)

 GCGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGC                                                                                              <  SRR4302536.3667449/94‑1 (MQ=60)

   GCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCAT                                                                                            >  SRR4302536.5983620/1‑94 (MQ=60)

    CACAGAGTTCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATC                                                                                           <  SRR4302536.1721432/94‑1 (MQ=60)

     CCAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCAGCTCTTGGTCAGGCGCATCG                                                                                          <  SRR4302536.467189/94‑1 (MQ=60)

     ACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCG                                                                                          >  SRR4302536.4869710/1‑94 (MQ=60)

       AGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGT                                                                                        >  SRR4302536.3680749/1‑94 (MQ=60)

        GAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTA                                                                                       <  SRR4302536.1017930/94‑1 (MQ=60)

         AGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAA                                                                                      <  SRR4302536.2435366/94‑1 (MQ=60)

         AGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAA                                                                                      >  SRR4302536.4631527/1‑94 (MQ=60)

         AGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAA                                                                                      >  SRR4302536.1029452/1‑94 (MQ=60)

          GTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATCCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAAT                                                                                     <  SRR4302536.484494/94‑1 (MQ=60)

           TGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATC                                                                                    <  SRR4302536.692542/94‑1 (MQ=60)

               TTTTCCCGCTCATCAATCAGCGCCTAATCATCACCAGCAACTTCCAAAAGTTTCGGCCCGAACATCTCTTGGTCAGTCGCATCGGTAATCAACT                                                                                <  SRR4302536.3074372/94‑1 (MQ=44)

               TTTACCCGCTCGTCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACT                                                                                <  SRR4302536.3074542/94‑1 (MQ=60)

               TTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACT                                                                                <  SRR4302536.6441643/94‑1 (MQ=60)

                TTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTC                                                                               <  SRR4302536.819460/94‑1 (MQ=60)

                   CCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCT                                                                            <  SRR4302536.6193439/94‑1 (MQ=60)

                    CCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTG                                                                           >  SRR4302536.1428399/1‑94 (MQ=60)

                     CGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGA                                                                          >  SRR4302536.3659753/1‑94 (MQ=60)

                      GCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGAC                                                                         <  SRR4302536.4046365/94‑1 (MQ=60)

                       CTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACG                                                                        >  SRR4302536.2274656/1‑94 (MQ=60)

                        TCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGG                                                                       >  SRR4302536.4033532/1‑94 (MQ=60)

                        TCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGG                                                                       >  SRR4302536.6783902/1‑94 (MQ=60)

                         CATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGA                                                                      >  SRR4302536.3372691/1‑94 (MQ=60)

                          ATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCTCTGACGGAA                                                                     <  SRR4302536.6728896/94‑1 (MQ=60)

                          ATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAA                                                                     >  SRR4302536.3172300/1‑94 (MQ=60)

                           TCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAAT                                                                    <  SRR4302536.2752635/94‑1 (MQ=60)

                           TCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAAT                                                                    <  SRR4302536.5424354/94‑1 (MQ=60)

                           TCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAAT                                                                    <  SRR4302536.6823225/94‑1 (MQ=60)

                            CAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGGTCAGCCCGAGCATCTCTTGGTCAAGCGCATCGGCAATTAACTCGCTGACGGAATG                                                                   >  SRR4302536.1813839/1‑94 (MQ=60)

                              ATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCCGACGGAATGCC                                                                 >  SRR4302536.573045/1‑94 (MQ=60)

                               TCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCA                                                                <  SRR4302536.5253530/94‑1 (MQ=60)

                               TCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCA                                                                <  SRR4302536.2349762/94‑1 (MQ=60)

                                CAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAG                                                               <  SRR4302536.4799204/94‑1 (MQ=60)

                                   CGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACA                                                            <  SRR4302536.6845020/94‑1 (MQ=60)

                                   CGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACA                                                            <  SRR4302536.592586/94‑1 (MQ=60)

                                   CGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACA                                                            >  SRR4302536.2766283/1‑94 (MQ=60)

                                    GCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAA                                                           <  SRR4302536.3185235/94‑1 (MQ=60)

                                    GCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAA                                                           >  SRR4302536.2341253/1‑94 (MQ=60)

                                     CCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAAT                                                          <  SRR4302536.4676282/94‑1 (MQ=60)

                                     CCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAAT                                                          <  SRR4302536.3347889/94‑1 (MQ=60)

                                     CCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCCTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAAT                                                          >  SRR4302536.1633673/1‑94 (MQ=60)

                                      CTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATTCCAGACGATA                                                         >  SRR4302536.5555161/1‑94 (MQ=60)

                                       TCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATAT                                                        <  SRR4302536.2658374/94‑1 (MQ=60)

                                        CATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATC                                                       >  SRR4302536.3864990/1‑94 (MQ=60)

                                        CATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATC                                                       >  SRR4302536.3709088/1‑94 (MQ=60)

                                        CATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATC                                                       >  SRR4302536.183455/1‑94 (MQ=60)

                                         ATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCT                                                      >  SRR4302536.1581487/1‑94 (MQ=60)

                                          TCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTT                                                     <  SRR4302536.4708668/94‑1 (MQ=60)

                                          TCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTT                                                     <  SRR4302536.880479/94‑1 (MQ=60)

                                            ATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCC                                                   >  SRR4302536.2426481/1‑94 (MQ=60)

                                             TCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCC                                                  <  SRR4302536.4677089/94‑1 (MQ=60)

                                             TCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCC                                                  >  SRR4302536.3250957/1‑94 (MQ=60)

                                             TCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCC                                                  >  SRR4302536.1969796/1‑94 (MQ=60)

                                             TCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCC                                                  >  SRR4302536.2497073/1‑94 (MQ=60)

                                              CACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCG                                                 >  SRR4302536.1015844/1‑94 (MQ=60)

                                               ACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGC                                                <  SRR4302536.1396806/94‑1 (MQ=60)

                                                CCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCG                                               >  SRR4302536.3896380/1‑94 (MQ=60)

                                                CCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCG                                               >  SRR4302536.1210285/1‑94 (MQ=60)

                                                  AGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCC                                             >  SRR4302536.1793595/1‑94 (MQ=60)

                                                  AGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCC                                             >  SRR4302536.1969800/1‑94 (MQ=60)

                                                   acacATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTGCCCGCGCCA                                            <  SRR4302536.3024963/90‑1 (MQ=60)

                                                   GCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCA                                            <  SRR4302536.4984448/94‑1 (MQ=60)

                                                   GCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCA                                            <  SRR4302536.3569883/94‑1 (MQ=60)

                                                   GCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCA                                            <  SRR4302536.2958094/94‑1 (MQ=60)

                                                    CAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAG                                           >  SRR4302536.6362046/1‑94 (MQ=60)

                                                    CAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAG                                           >  SRR4302536.4547891/1‑94 (MQ=60)

                                                      AATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAT                                         <  SRR4302536.1197189/94‑1 (MQ=60)

                                                      AATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGAT                                         <  SRR4302536.1654609/94‑1 (MQ=60)

                                                       ATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATT                                        >  SRR4302536.1952551/1‑94 (MQ=60)

                                                       ATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATT                                        <  SRR4302536.1521465/94‑1 (MQ=60)

                                                        TTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTC                                       <  SRR4302536.5109604/94‑1 (MQ=60)

                                                         TCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCA                                      >  SRR4302536.624236/1‑94 (MQ=60)

                                                          CCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAG                                     <  SRR4302536.5903929/94‑1 (MQ=60)

                                                          CCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAG                                     >  SRR4302536.2226060/1‑94 (MQ=60)

                                                            ACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCA                                   >  SRR4302536.3888672/1‑94 (MQ=60)

                                                            ACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCA                                   >  SRR4302536.4658934/1‑94 (MQ=60)

                                                             CAATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCAC                                  >  SRR4302536.2832791/1‑94 (MQ=60)

                                                              AATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACT                                 <  SRR4302536.2956300/94‑1 (MQ=60)

                                                              AATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACT                                 >  SRR4302536.2493040/1‑94 (MQ=60)

                                                               ATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTT                                >  SRR4302536.3016863/1‑94 (MQ=60)

                                                               ATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTT                                >  SRR4302536.3491738/1‑94 (MQ=60)

                                                               ATGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATCCCAGACAATATCTTCCCGCGCCAGATTCAGCACTT                                <  SRR4302536.1557546/94‑1 (MQ=60)

                                                                TGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTT                               <  SRR4302536.275892/94‑1 (MQ=60)

                                                                TGTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTT                               <  SRR4302536.5607314/94‑1 (MQ=60)

                                                                 GTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTT                              >  SRR4302536.3164126/1‑94 (MQ=60)

                                                                 GTTCAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTT                              <  SRR4302536.312559/94‑1 (MQ=60)

                                                                   TCGGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTCA                            >  SRR4302536.1999658/1‑94 (MQ=60)

                                                                    CAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAG                           >  SRR4302536.1202078/1‑94 (MQ=60)

                                                                    CAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAG                           >  SRR4302536.4201806/1‑94 (MQ=60)

                                                                    CAGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAG                           <  SRR4302536.2705684/94‑1 (MQ=60)

                                                                     AGCCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGT                          <  SRR4302536.6187019/94‑1 (MQ=60)

                                                                      ACCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTC                         <  SRR4302536.6002662/94‑1 (MQ=60)

                                                                       CCCGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCC                        >  SRR4302536.6598498/1‑94 (MQ=60)

                                                                         CGAGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCAC                      >  SRR4302536.2677741/1‑94 (MQ=60)

                                                                           AGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCG                    <  SRR4302536.2166141/94‑1 (MQ=60)

                                                                           AGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCG                    <  SRR4302536.2266608/94‑1 (MQ=60)

                                                                           AGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCG                    >  SRR4302536.5424619/1‑94 (MQ=60)

                                                                           AGCATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCG                    >  SRR4302536.4029040/1‑94 (MQ=60)

                                                                             CATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTC                  >  SRR4302536.2740238/1‑94 (MQ=60)

                                                                             CATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTC                  >  SRR4302536.6368512/1‑94 (MQ=60)

                                                                              ATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCCGATTCAGCACTTTTGAGTCCACCGTCT                 >  SRR4302536.2992707/1‑94 (MQ=60)

                                                                              ATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCT                 >  SRR4302536.5790903/1‑94 (MQ=60)

                                                                              ATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCT                 <  SRR4302536.3036761/94‑1 (MQ=60)

                                                                              ATCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCT                 >  SRR4302536.4968532/1‑94 (MQ=60)

                                                                               TCTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTC                >  SRR4302536.5918340/1‑94 (MQ=60)

                                                                                CTCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCT               <  SRR4302536.3352720/94‑1 (MQ=60)

                                                                                 TCTTGGTCAGTCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTA              <  SRR4302536.2881944/94‑1 (MQ=60)

                                                                                 TCTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTA              <  SRR4302536.994673/94‑1 (MQ=60)

                                                                                  CTTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTAC             <  SRR4302536.3259258/94‑1 (MQ=60)

                                                                                   TTGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACC            <  SRR4302536.2444538/94‑1 (MQ=60)

                                                                                    TGTTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCG           <  SRR4302536.1553972/94‑1 (MQ=60)

                                                                                    TGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCG           <  SRR4302536.1482200/94‑1 (MQ=60)

                                                                                    TGGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCA           >  SRR4302536.593899/1‑94 (MQ=60)

                                                                                     GGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGA          >  SRR4302536.1373879/1‑94 (MQ=60)

                                                                                     GGTCAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGA          <  SRR4302536.5081062/94‑1 (MQ=60)

                                                                                        CAGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAG       <  SRR4302536.6549413/94‑1 (MQ=60)

                                                                                         AGGCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGC      <  SRR4302536.4440191/94‑1 (MQ=60)

                                                                                           GCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGC    <  SRR4302536.977034/94‑1 (MQ=60)

                                                                                           GCGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGC    <  SRR4302536.1473583/94‑1 (MQ=60)

                                                                                            CGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCC   >  SRR4302536.6114646/1‑94 (MQ=60)

                                                                                            CGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCC   <  SRR4302536.1040575/94‑1 (MQ=60)

                                                                                            CGCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCC   <  SRR4302536.6253618/94‑1 (MQ=60)

                                                                                             GCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCC  <  SRR4302536.4596793/94‑1 (MQ=60)

                                                                                             GCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCC  >  SRR4302536.4569449/1‑94 (MQ=60)

                                                                                             GCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCC  >  SRR4302536.6396650/1‑94 (MQ=60)

                                                                                             GCATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTATTGAGTCCACCGTCTCTACCGAAAGCGCCC  >  SRR4302536.5796051/1‑94 (MQ=60)

CGCGCACAGAGTGCATTTACCCGCTCATCAATCAGCGCCTCATCATCACCAGCAAATTCCACAATGTTCAGCCCGAGCATCTCTTGGTCAGGCACATCGGTAATCAACTCGCTGACGGAATGCCAGACAATATCTTCCCGCGCCAGATTCAGCACTTTTGAGTCCACCGTCTCTACCGAAAGCGCCC  >  NC_000913/1765598‑1765784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`