Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,858,325	A→G	D344D (GAT→GAC)	b1776 ←	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,858,325	0	A	G	100.0%	874.1 / NA	269	D344D (GAT→GAC)	b1776	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (138/131); total (138/131)

Only 100 of 271 total aligned reads displayed.

GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAA  >  NC_000913/1858235‑1858414

gTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTc                                                                                         <  1:3199412/93‑1 (MQ=255)

gTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTc                                                                                         >  2:1527475/1‑93 (MQ=255)

gTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTc                                                                                         >  2:4274530/1‑93 (MQ=255)

  tttGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGa                                                                                       >  2:6701051/1‑93 (MQ=255)

   ttGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGAc                                                                                      <  1:1561111/93‑1 (MQ=255)

    tGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGAcc                                                                                     >  1:4358360/1‑93 (MQ=255)

    tGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGAcc                                                                                     <  1:5253375/93‑1 (MQ=255)

    tGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGAcc                                                                                     >  1:5349566/1‑93 (MQ=255)

    tGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGAcc                                                                                     <  1:4842004/93‑1 (MQ=255)

     gTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCa                                                                                    <  1:314861/93‑1 (MQ=255)

     gTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCa                                                                                    >  2:5052773/1‑93 (MQ=255)

     gTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCa                                                                                    >  1:541391/1‑93 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  <  1:3718595/93‑1 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  >  1:1395437/1‑93 (MQ=255)

        aTCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCg                                                                                 <  2:826954/93‑1 (MQ=255)

           tGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAt                                                                              >  1:4670599/1‑93 (MQ=255)

           tGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAt                                                                              <  2:5917053/93‑1 (MQ=255)

            gTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATc                                                                             >  2:3271689/1‑93 (MQ=255)

             ttCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCa                                                                            <  2:2209158/93‑1 (MQ=255)

              tCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCaa                                                                           >  2:5309829/1‑93 (MQ=255)

               ccATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCaaa                                                                          >  2:165486/1‑93 (MQ=255)

                 aTGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAcc                                                                        <  1:2711151/93‑1 (MQ=255)

                  tGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAccc                                                                       <  1:5762460/93‑1 (MQ=255)

                    cGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCtt                                                                     >  2:1850367/1‑93 (MQ=255)

                    cGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCtt                                                                     <  2:874023/93‑1 (MQ=255)

                    cGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCtt                                                                     <  2:6581061/93‑1 (MQ=255)

                     gATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTc                                                                    <  1:975288/93‑1 (MQ=255)

                      aTAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTcg                                                                   >  2:3117809/1‑93 (MQ=255)

                         aCGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCgcgc                                                                >  2:2367915/1‑93 (MQ=255)

                           gTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCa                                                              >  2:6637348/1‑93 (MQ=255)

                             tCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAtt                                                            <  1:2069729/93‑1 (MQ=255)

                             tCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAtt                                                            <  2:3934085/93‑1 (MQ=255)

                              ccTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTg                                                           <  1:669039/93‑1 (MQ=255)

                              ccTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTg                                                           >  2:3908307/1‑93 (MQ=255)

                               cTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGc                                                          <  2:2481825/93‑1 (MQ=255)

                               cTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGc                                                          >  1:3654567/1‑93 (MQ=255)

                               cTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGc                                                          >  1:4471766/1‑93 (MQ=255)

                               cTTCAGGAGAGAGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGc                                                          >  1:6214848/1‑93 (MQ=255)

                                   aGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACa                                                      >  1:4009145/1‑93 (MQ=255)

                                   aGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACa                                                      >  1:4903915/1‑93 (MQ=255)

                                   aGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACa                                                      <  2:1464274/93‑1 (MQ=255)

                                    ggAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAg                                                     <  1:5701775/93‑1 (MQ=255)

                                    ggAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAg                                                     <  2:1390731/93‑1 (MQ=255)

                                    ggAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAg                                                     >  1:3812093/1‑93 (MQ=255)

                                       gagTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGcc                                                  >  2:529041/1‑93 (MQ=255)

                                       gagTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGcc                                                  <  2:5469398/93‑1 (MQ=255)

                                          tGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAt                                               >  1:1664539/1‑93 (MQ=255)

                                          tGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAt                                               >  2:5819356/1‑93 (MQ=255)

                                           ggTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATa                                              <  1:3371371/93‑1 (MQ=255)

                                           ggTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATa                                              <  1:4852241/93‑1 (MQ=255)

                                            gTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAc                                             <  2:5179850/93‑1 (MQ=255)

                                            gTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAc                                             >  1:6022962/1‑93 (MQ=255)

                                             ttATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACg                                            <  1:781722/93‑1 (MQ=255)

                                              tATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGa                                           <  2:4731568/93‑1 (MQ=255)

                                               aTTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAt                                          >  1:5395872/1‑93 (MQ=255)

                                                ttCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATg                                         >  2:6276380/1‑93 (MQ=255)

                                                 tcatcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGc                                        >  2:6426259/1‑93 (MQ=255)

                                                  catcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCg                                       >  2:2976364/1‑93 (MQ=255)

                                                  catcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCg                                       <  2:2028473/93‑1 (MQ=255)

                                                  caccaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGGCCGATACGATGCg                                       <  1:2479109/90‑1 (MQ=255)

                                                   atcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGt                                      >  2:3525339/1‑93 (MQ=255)

                                                   atcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGt                                      <  1:2178862/93‑1 (MQ=255)

                                                   atcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGt                                      >  1:3921147/1‑93 (MQ=255)

                                                    tcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTg                                     <  1:232425/93‑1 (MQ=255)

                                                     caAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGa                                    <  2:1069756/93‑1 (MQ=255)

                                                      aaaGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGat                                   >  1:4701750/1‑93 (MQ=255)

                                                      aaaGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGat                                   >  2:1957663/1‑93 (MQ=255)

                                                        aGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatca                                 <  1:6653052/93‑1 (MQ=255)

                                                            gTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCgg                             >  1:1175152/1‑93 (MQ=255)

                                                            gTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCgg                             <  1:1954237/93‑1 (MQ=255)

                                                             tAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGt                            >  2:5745030/1‑93 (MQ=255)

                                                               aGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGttt                          <  2:2817792/93‑1 (MQ=255)

                                                                gTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTg                         >  2:192059/1‑93 (MQ=255)

                                                                gTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTg                         >  2:2064433/1‑93 (MQ=255)

                                                                 tCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGa                        <  1:549591/93‑1 (MQ=255)

                                                                  cATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAGCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGAc                       <  1:2951545/93‑1 (MQ=255)

                                                                   aTGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACt                      <  1:6524954/93‑1 (MQ=255)

                                                                    tGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACtt                     <  1:4146413/93‑1 (MQ=255)

                                                                    tGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACtt                     <  2:5400796/93‑1 (MQ=255)

                                                                    tGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACtt                     >  1:1225279/1‑93 (MQ=255)

                                                                    tGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACtt                     <  2:1083874/93‑1 (MQ=255)

                                                                     taTCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACttt                    <  1:6367858/92‑1 (MQ=255)

                                                                      aTCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTg                   >  2:5622743/1‑93 (MQ=255)

                                                                       tCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGa                  >  2:4921397/1‑93 (MQ=255)

                                                                       tCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGa                  >  1:3782583/1‑93 (MQ=255)

                                                                       tCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGa                  >  1:6442447/1‑93 (MQ=255)

                                                                        cACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGAt                 <  1:4996868/93‑1 (MQ=255)

                                                                          cTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAg               <  1:1447046/93‑1 (MQ=255)

                                                                           tttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgc              >  1:4785314/1‑93 (MQ=255)

                                                                            ttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgcg             >  2:1188997/1‑93 (MQ=255)

                                                                              gATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgcc           <  2:6358151/93‑1 (MQ=255)

                                                                                ttGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccgc         <  2:5880561/93‑1 (MQ=255)

                                                                                ttGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccgc         <  1:1073390/93‑1 (MQ=255)

                                                                                 tGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCt        <  1:3260926/93‑1 (MQ=255)

                                                                                  gCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTg       <  1:1718141/93‑1 (MQ=255)

                                                                                   cGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTgg      <  1:2593939/93‑1 (MQ=255)

                                                                                    ggTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGc     >  1:2657231/1‑93 (MQ=255)

                                                                                    ggTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGc     >  1:3430251/1‑93 (MQ=255)

                                                                                     gTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCt    <  1:5063650/93‑1 (MQ=255)

                                                                                      ttttGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTa   >  2:6046571/1‑93 (MQ=255)

GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAA  >  NC_000913/1858235‑1858414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG  >  NC_000913/1858232‑1858417

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTG                                                                                              <  SRR4302536.6463415/94‑1 (MQ=60)

  GGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTC                                                                                            >  SRR4302536.490269/1‑94 (MQ=60)

   GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCG                                                                                           <  SRR4302536.3293215/94‑1 (MQ=60)

   GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCG                                                                                           >  SRR4302536.5414809/1‑94 (MQ=60)

      TTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACC                                                                                        <  SRR4302536.1606959/94‑1 (MQ=60)

      TTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACC                                                                                        >  SRR4302536.5509274/1‑94 (MQ=60)

      TTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACC                                                                                        >  SRR4302536.4488674/1‑94 (MQ=60)

       TGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCA                                                                                       <  SRR4302536.4987727/94‑1 (MQ=60)

       TGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCA                                                                                       <  SRR4302536.5409905/94‑1 (MQ=60)

       TGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCA                                                                                       <  SRR4302536.1250697/94‑1 (MQ=60)

       TGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCA                                                                                       >  SRR4302536.555202/1‑94 (MQ=60)

        GTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCGCTTTGATTGCGGTTTTGTCGACCAT                                                                                      <  SRR4302536.6335627/94‑1 (MQ=60)

        GTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCAT                                                                                      <  SRR4302536.323212/94‑1 (MQ=60)

         TTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATC                                                                                     >  SRR4302536.1436980/1‑94 (MQ=60)

         TTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATC                                                                                     >  SRR4302536.3905324/1‑94 (MQ=60)

          TATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCG                                                                                    <  SRR4302536.3829749/94‑1 (MQ=60)

          TATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTATGATTGCGGTTTTGTCGACCATCG                                                                                    >  SRR4302536.6786913/1‑94 (MQ=60)

           ATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGC                                                                                   <  SRR4302536.1756429/94‑1 (MQ=60)

            TCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCA                                                                                  <  SRR4302536.2484818/94‑1 (MQ=60)

             CTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAT                                                                                 <  SRR4302536.5022190/94‑1 (MQ=60)

             CTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAT                                                                                 >  SRR4302536.4811035/1‑94 (MQ=60)

              TGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGCCCATCGCATC                                                                                >  SRR4302536.452332/1‑94 (MQ=60)

              TGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATC                                                                                <  SRR4302536.3379686/94‑1 (MQ=60)

              TGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATC                                                                                >  SRR4302536.6537273/1‑94 (MQ=60)

              TGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATC                                                                                >  SRR4302536.1251186/1‑94 (MQ=60)

               GTTGCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCA                                                                               <  SRR4302536.1487123/94‑1 (MQ=60)

               GTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGTTCACTTTGATTGCGGTTTTGTCGACCATCGCATCA                                                                               >  SRR4302536.3302509/1‑94 (MQ=60)

                TTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAA                                                                              >  SRR4302536.4942740/1‑94 (MQ=60)

                 TCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAA                                                                             >  SRR4302536.38744/1‑94 (MQ=60)

                 TCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAA                                                                             <  SRR4302536.509361/94‑1 (MQ=60)

                  CCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAC                                                                            >  SRR4302536.1607231/1‑94 (MQ=60)

                   CATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCTCATCAAACC                                                                           <  SRR4302536.6751384/94‑1 (MQ=60)

                   CATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACC                                                                           >  SRR4302536.2009115/1‑94 (MQ=60)

                   CATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACC                                                                           >  SRR4302536.6920964/1‑94 (MQ=60)

                    ATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCC                                                                          <  SRR4302536.2792028/94‑1 (MQ=60)

                     TGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCT                                                                         <  SRR4302536.5933877/94‑1 (MQ=60)

                      GCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTT                                                                        >  SRR4302536.4824814/1‑94 (MQ=60)

                       CGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTC                                                                       >  SRR4302536.2823776/1‑94 (MQ=60)

                       CGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTC                                                                       >  SRR4302536.2872931/1‑94 (MQ=60)

                        GATAACGTTGCTACAGGAGATTGATTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAGCCCTTCG                                                                      <  SRR4302536.4158252/94‑1 (MQ=60)

                        GATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAATCCCTTCG                                                                      <  SRR4302536.3039345/94‑1 (MQ=60)

                        GATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCG                                                                      <  SRR4302536.1004066/94‑1 (MQ=60)

                         ATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGC                                                                     <  SRR4302536.3488379/94‑1 (MQ=60)

                           AGCGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGC                                                                   <  SRR4302536.4758499/94‑1 (MQ=60)

                           AACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGC                                                                   <  SRR4302536.6867324/94‑1 (MQ=60)

                           AACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGC                                                                   >  SRR4302536.4967073/1‑94 (MQ=60)

                            ACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCGTTCGCGAC                                                                  >  SRR4302536.3238877/1‑94 (MQ=60)

                            ACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCC                                                                  >  SRR4302536.2752575/1‑94 (MQ=60)

                              GTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAT                                                                >  SRR4302536.5540180/1‑94 (MQ=60)

                               TTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATT                                                               >  SRR4302536.1194935/1‑94 (MQ=60)

                               TTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATT                                                               >  SRR4302536.5703031/1‑94 (MQ=60)

                                TCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTG                                                              <  SRR4302536.1594813/94‑1 (MQ=60)

                                TCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTG                                                              <  SRR4302536.2132077/94‑1 (MQ=60)

                                 CCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGC                                                             >  SRR4302536.3763816/1‑94 (MQ=60)

                                 CCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGC                                                             >  SRR4302536.4606095/1‑94 (MQ=60)

                                 CCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGC                                                             <  SRR4302536.688653/94‑1 (MQ=60)

                                 ACTTCAGGAGAGAGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGC                                                             >  SRR4302536.6400025/1‑94 (MQ=60)

                                    TCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGAC                                                          <  SRR4302536.1669920/94‑1 (MQ=60)

                                     CAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACA                                                         >  SRR4302536.5051359/1‑94 (MQ=60)

                                     CAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACA                                                         >  SRR4302536.4128101/1‑94 (MQ=60)

                                     CAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACA                                                         >  SRR4302536.392719/1‑94 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                        >  SRR4302536.4994325/1‑94 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                        >  SRR4302536.3925736/1‑94 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                        >  SRR4302536.2695598/1‑94 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                        <  SRR4302536.5190003/94‑1 (MQ=60)

                                       GGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGG                                                       <  SRR4302536.5871319/94‑1 (MQ=60)

                                         AGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCC                                                     <  SRR4302536.428086/94‑1 (MQ=60)

                                         AGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCC                                                     >  SRR4302536.6219736/1‑94 (MQ=60)

                                         AGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCC                                                     >  SRR4302536.3770969/1‑94 (MQ=60)

                                         AGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCC                                                     <  SRR4302536.5893850/94‑1 (MQ=60)

                                           AGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGA                                                   >  SRR4302536.4558591/1‑94 (MQ=60)

                                            GTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAT                                                  <  SRR4302536.3628237/94‑1 (MQ=60)

                                            GTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAT                                                  >  SRR4302536.1712839/1‑94 (MQ=60)

                                             TGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATA                                                 <  SRR4302536.6107627/94‑1 (MQ=60)

                                              GGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAC                                                >  SRR4302536.6202539/1‑94 (MQ=60)

                                              GGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAC                                                <  SRR4302536.3471528/94‑1 (MQ=60)

                                              GGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAC                                                <  SRR4302536.4998246/94‑1 (MQ=60)

                                                TTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGA                                              <  SRR4302536.804615/94‑1 (MQ=60)

                                                TTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGA                                              <  SRR4302536.670266/94‑1 (MQ=60)

                                                TTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGA                                              >  SRR4302536.5340407/1‑94 (MQ=60)

                                                 TATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAT                                             <  SRR4302536.1782955/94‑1 (MQ=60)

                                                 TATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAT                                             >  SRR4302536.5556994/1‑94 (MQ=60)

                                                 TATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAT                                             >  SRR4302536.5479691/1‑94 (MQ=60)

                                                 TATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAT                                             <  SRR4302536.3795020/94‑1 (MQ=60)

                                                    TCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCG                                          >  SRR4302536.5047146/1‑94 (MQ=60)

                                                     TATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                         <  SRR4302536.5571790/94‑1 (MQ=60)

                                                     CATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                         >  SRR4302536.1267981/1‑94 (MQ=60)

                                                     CATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                         >  SRR4302536.5691497/1‑94 (MQ=60)

                                                     CATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                         >  SRR4302536.6504555/1‑94 (MQ=60)

                                                     CATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                         >  SRR4302536.4037682/1‑94 (MQ=60)

                                                     CACCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                         <  SRR4302536.2553927/94‑1 (MQ=60)

                                                      ATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTG                                        <  SRR4302536.883400/94‑1 (MQ=60)

                                                      ATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTG                                        <  SRR4302536.2244525/94‑1 (MQ=60)

                                                       TCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGA                                       <  SRR4302536.4715093/94‑1 (MQ=60)

                                                       TCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGA                                       <  SRR4302536.238608/94‑1 (MQ=60)

                                                       TCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGA                                       >  SRR4302536.3856401/1‑94 (MQ=60)

                                                        CAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGAT                                      >  SRR4302536.4843127/1‑94 (MQ=60)

                                                        CAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTGTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGAT                                      <  SRR4302536.5576946/94‑1 (MQ=60)

                                                         AAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATC                                     >  SRR4302536.5511117/1‑94 (MQ=60)

                                                           AGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCAT                                   <  SRR4302536.2043012/94‑1 (MQ=60)

                                                           AGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCAT                                   <  SRR4302536.6850814/94‑1 (MQ=60)

                                                           AGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCAT                                   >  SRR4302536.223250/1‑94 (MQ=60)

                                                              CGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGG                                >  SRR4302536.1210526/1‑94 (MQ=60)

                                                               GTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGT                               <  SRR4302536.2013000/94‑1 (MQ=60)

                                                                TAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTT                              <  SRR4302536.6661160/94‑1 (MQ=60)

                                                                TAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTT                              <  SRR4302536.3377600/94‑1 (MQ=60)

                                                                 AAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTT                             <  SRR4302536.2407694/94‑1 (MQ=60)

                                                                  AGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTG                            >  SRR4302536.2604243/1‑94 (MQ=60)

                                                                   GTCATGATCCCTTTGATTGCGGTTTTGCCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGA                           <  SRR4302536.6100952/94‑1 (MQ=60)

                                                                    TCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGAC                          <  SRR4302536.563610/94‑1 (MQ=60)

                                                                     CATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAGCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACT                         <  SRR4302536.3038532/94‑1 (MQ=60)

                                                                     CATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACT                         <  SRR4302536.5091574/94‑1 (MQ=60)

                                                                      ATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTT                        >  SRR4302536.1262094/1‑94 (MQ=60)

                                                                      ATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTT                        >  SRR4302536.2359162/1‑94 (MQ=60)

                                                                      ATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTT                        <  SRR4302536.6719316/94‑1 (MQ=60)

                                                                       TGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTT                       <  SRR4302536.4269433/94‑1 (MQ=60)

                                                                       TGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTT                       >  SRR4302536.6575305/1‑94 (MQ=60)

                                                                        TATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTG                      <  SRR4302536.6557620/94‑1 (MQ=60)

                                                                        GATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTG                      >  SRR4302536.1546271/1‑94 (MQ=60)

                                                                        GATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTG                      <  SRR4302536.3722364/94‑1 (MQ=60)

                                                                         ATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGA                     >  SRR4302536.3895447/1‑94 (MQ=60)

                                                                         ATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGA                     >  SRR4302536.6634935/1‑94 (MQ=60)

                                                                          TCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGAT                    <  SRR4302536.3290456/94‑1 (MQ=60)

                                                                          TCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGAT                    <  SRR4302536.4291448/94‑1 (MQ=60)

                                                                          TCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGAT                    <  SRR4302536.4044782/94‑1 (MQ=60)

                                                                           CACTTTGATTGCGGTTTTGTCGACCATCGCATCAAGCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATA                   <  SRR4302536.811401/94‑1 (MQ=60)

                                                                           CACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATA                   <  SRR4302536.5146828/94‑1 (MQ=60)

                                                                            ACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAG                  <  SRR4302536.4088959/94‑1 (MQ=60)

                                                                            ACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAG                  <  SRR4302536.1373853/94‑1 (MQ=60)

                                                                             CTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGC                 <  SRR4302536.27694/94‑1 (MQ=60)

                                                                             CTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGC                 <  SRR4302536.1489921/94‑1 (MQ=60)

                                                                             CTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGC                 >  SRR4302536.4929381/1‑94 (MQ=60)

                                                                             CTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGC                 <  SRR4302536.5639067/94‑1 (MQ=60)

                                                                               TTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGC               <  SRR4302536.5361136/94‑1 (MQ=60)

                                                                                TGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTTATAGCGCC              <  SRR4302536.6882157/94‑1 (MQ=60)

                                                                                 GATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCG             <  SRR4302536.2576798/94‑1 (MQ=60)

                                                                                   TTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCT           <  SRR4302536.1105526/94‑1 (MQ=60)

                                                                                    TGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTG          <  SRR4302536.3356553/94‑1 (MQ=60)

                                                                                     GCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGG         <  SRR4302536.2081185/94‑1 (MQ=60)

                                                                                     GCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGG         <  SRR4302536.1767802/94‑1 (MQ=60)

                                                                                      CGGTTTTGTCGACTATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGC        <  SRR4302536.3973375/94‑1 (MQ=60)

                                                                                      CGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGC        <  SRR4302536.2671820/94‑1 (MQ=60)

                                                                                      CGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGC        >  SRR4302536.2736771/1‑94 (MQ=60)

                                                                                      CGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGC        >  SRR4302536.3532353/1‑94 (MQ=60)

                                                                                       GGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCT       <  SRR4302536.3301205/94‑1 (MQ=60)

                                                                                       GGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCT       >  SRR4302536.4919898/1‑94 (MQ=60)

                                                                                        GTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTA      >  SRR4302536.2190335/1‑94 (MQ=60)

                                                                                        GTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTA      <  SRR4302536.72961/94‑1 (MQ=60)

                                                                                        GTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTA      <  SRR4302536.5215311/94‑1 (MQ=60)

                                                                                           TTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATA   >  SRR4302536.6575321/1‑94 (MQ=60)

                                                                                           TTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATA   <  SRR4302536.712860/94‑1 (MQ=60)

                                                                                           TTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATA   <  SRR4302536.5111592/94‑1 (MQ=60)

                                                                                            TGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG  <  SRR4302536.3436286/94‑1 (MQ=60)

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG  >  NC_000913/1858232‑1858417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`