Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,038,998 A→G Y165C (TAT→TGT)  b1972 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,038,9980AG100.0% 701.6 / NA 212Y165C (TAT→TGT) b1972hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (107/105);  total (107/105)

Only 100 of 214 total aligned reads displayed.

CAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTG  >  NC_000913/2038908‑2039086
                                                                                          |                                                                                        
 aaCCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCt                                                                                       <  1:3374540/93‑1 (MQ=255)
  aCCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTACCTTGTCGCGATTCTGGCCCCAATACATTGTCtg                                                                                      <  2:6544828/93‑1 (MQ=255)
   cccAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCtgt                                                                                     <  2:4966423/93‑1 (MQ=255)
      aGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGt                                                                                  >  1:6462888/1‑93 (MQ=255)
      aGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGt                                                                                  <  1:2367287/93‑1 (MQ=255)
       ggCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTc                                                                                 >  1:3720988/1‑93 (MQ=255)
       ggCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTc                                                                                 >  1:2397884/1‑93 (MQ=255)
       ggCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGGCTGTGGTc                                                                                 <  1:6548479/93‑1 (MQ=255)
         cGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCg                                                                               >  1:362578/1‑93 (MQ=255)
           aTGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTg                                                                             <  2:901207/93‑1 (MQ=255)
           aTGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTg                                                                             >  2:4333016/1‑93 (MQ=255)
           aTGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTg                                                                             <  1:486346/93‑1 (MQ=255)
             gCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGaa                                                                           <  1:3327485/93‑1 (MQ=255)
                gCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGat                                                                        <  1:5577616/93‑1 (MQ=255)
                 cGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGatt                                                                       <  2:6438825/93‑1 (MQ=255)
                  gAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGatta                                                                      <  2:3103538/93‑1 (MQ=255)
                   aaaaCTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGattat                                                                     <  2:677789/93‑1 (MQ=255)
                    aaaCTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGattatt                                                                    >  2:1736097/1‑93 (MQ=255)
                    aaaCTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGattatt                                                                    >  2:4484766/1‑93 (MQ=255)
                    aaaCTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGattatt                                                                    <  2:5346116/93‑1 (MQ=255)
                     aaCTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTAttt                                                                   >  1:2836948/1‑93 (MQ=255)
                      aCTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTc                                                                  >  1:3224250/1‑93 (MQ=255)
                      aCTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTc                                                                  >  2:6653401/1‑93 (MQ=255)
                      aCTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTc                                                                  >  1:3643864/1‑93 (MQ=255)
                       cTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCa                                                                 <  1:6327309/93‑1 (MQ=255)
                          ggCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCg                                                              >  1:6654900/1‑93 (MQ=255)
                          ggCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCg                                                              <  1:5464991/93‑1 (MQ=255)
                          ggCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCg                                                              <  1:1120331/93‑1 (MQ=255)
                          ggCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTACGTGAAGATTATTTCACCg                                                              >  2:2292409/1‑93 (MQ=255)
                           gCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGc                                                             <  2:2620337/93‑1 (MQ=255)
                           gCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGc                                                             <  1:2212621/93‑1 (MQ=255)
                            cAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCa                                                            <  1:4405221/93‑1 (MQ=255)
                            cAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCa                                                            <  1:1280247/93‑1 (MQ=255)
                             aaGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAg                                                           <  2:1851843/93‑1 (MQ=255)
                             aaGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAg                                                           >  1:5916995/1‑93 (MQ=255)
                             aaGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAg                                                           >  2:5740858/1‑93 (MQ=255)
                              aGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGc                                                          <  1:5027106/93‑1 (MQ=255)
                              aGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGc                                                          <  1:940630/93‑1 (MQ=255)
                              aGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGc                                                          >  1:5649681/1‑93 (MQ=255)
                               gCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGcc                                                         <  1:6039559/93‑1 (MQ=255)
                               gCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGcc                                                         <  2:5917498/93‑1 (MQ=255)
                                cACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCg                                                        >  1:1545454/1‑93 (MQ=255)
                                cACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCg                                                        <  2:5701063/93‑1 (MQ=255)
                                cACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCg                                                        <  2:5153239/93‑1 (MQ=255)
                                       aaCAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCt                                                 >  1:5398336/1‑93 (MQ=255)
                                       aaCAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCt                                                 >  1:164527/1‑93 (MQ=255)
                                       aaCAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCt                                                 <  1:1396336/93‑1 (MQ=255)
                                        aCAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTa                                                <  2:3159122/93‑1 (MQ=255)
                                        aCAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTa                                                <  2:868849/93‑1 (MQ=255)
                                        aCAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTa                                                <  1:1042077/93‑1 (MQ=255)
                                           gTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgc                                             <  1:758296/93‑1 (MQ=255)
                                           gTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgc                                             >  2:2383338/1‑93 (MQ=255)
                                           gTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgc                                             >  1:4433351/1‑93 (MQ=255)
                                              gCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgctgg                                          >  1:6703978/1‑93 (MQ=255)
                                              gCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgctgg                                          >  1:3160721/1‑93 (MQ=255)
                                               cATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgctggg                                         >  1:20253/1‑93 (MQ=255)
                                                aTAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgctgggc                                        >  2:4272836/1‑93 (MQ=255)
                                                 tAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgctgggct                                       >  2:4899818/1‑93 (MQ=255)
                                                  aaTTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgctgggctg                                      >  2:3323225/1‑93 (MQ=255)
                                                   aTTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACgctgggctgg                                     <  2:3782560/93‑1 (MQ=255)
                                                    tttCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGggctggc                                    <  2:5059047/93‑1 (MQ=255)
                                                        gTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTa                                >  1:3771343/1‑93 (MQ=255)
                                                        gTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTa                                >  2:3285547/1‑93 (MQ=255)
                                                         tCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTAc                               <  2:6037772/93‑1 (MQ=255)
                                                         tCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTAc                               <  2:3451402/93‑1 (MQ=255)
                                                         tCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTAc                               >  2:1358307/1‑93 (MQ=255)
                                                           tATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTg                             >  1:3449736/1‑93 (MQ=255)
                                                           tATCTTGTCGCGATTCTGGCCCCAATACATTGTATGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTg                             >  1:5302238/1‑93 (MQ=255)
                                                            aTCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGc                            <  2:6267849/93‑1 (MQ=255)
                                                             tCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCt                           >  2:1074281/1‑93 (MQ=255)
                                                             tCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCt                           <  2:4208907/93‑1 (MQ=255)
                                                              cTTGTCGCGATTCTGGCCCCAATATATTGTCAGTGGTTCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCtt                          <  2:1228447/93‑1 (MQ=255)
                                                              cTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCtt                          <  1:6163252/93‑1 (MQ=255)
                                                               ttGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCttt                         <  2:1773505/93‑1 (MQ=255)
                                                                tGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCtttt                        <  1:3301572/93‑1 (MQ=255)
                                                                tGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCtttt                        <  1:2917656/93‑1 (MQ=255)
                                                                 ttCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTa                       <  2:2705797/92‑1 (MQ=255)
                                                                 gTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTa                       <  2:2908039/93‑1 (MQ=255)
                                                                 gTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTa                       <  2:4113780/93‑1 (MQ=255)
                                                                  tCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAg                      >  2:4793099/1‑93 (MQ=255)
                                                                    gcgATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGcc                    <  2:610160/93‑1 (MQ=255)
                                                                     cgATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCt                   <  2:5898106/93‑1 (MQ=255)
                                                                     cgATTCTGGCCCCAATACATTGTCTGTGGGCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCt                   <  2:5550859/93‑1 (MQ=255)
                                                                      gATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCtt                  >  1:4615627/1‑93 (MQ=255)
                                                                       aTTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTa                 >  2:1802475/1‑93 (MQ=255)
                                                                       aTTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTa                 >  1:2974952/1‑93 (MQ=255)
                                                                        ttCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTAc                <  1:5785797/93‑1 (MQ=255)
                                                                          cTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACgg              <  2:6332796/93‑1 (MQ=255)
                                                                            ggCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGta            <  1:2492124/93‑1 (MQ=255)
                                                                            ggCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGta            >  1:1107244/1‑93 (MQ=255)
                                                                             gCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGtat           >  1:5944969/1‑93 (MQ=255)
                                                                             gCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGtat           >  1:4134717/1‑93 (MQ=255)
                                                                             gCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGtat           <  1:431339/93‑1 (MQ=255)
                                                                                ccAATACATTGTCTGTGGTCCGTGAAGATTATTTTACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTTGCCTTACGGTATaag        >  1:1749239/1‑93 (MQ=255)
                                                                                ccAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATaag        >  1:3571576/1‑93 (MQ=255)
                                                                                ccAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATaag        >  1:1940649/1‑93 (MQ=255)
                                                                                ccAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATaag        >  1:2296726/1‑93 (MQ=255)
                                                                                  aaTACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATaagaa      <  1:5191969/93‑1 (MQ=255)
                                                                                  aaTACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATaagaa      >  1:5938648/1‑93 (MQ=255)
                                                                                    tACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGt    >  2:3817837/1‑93 (MQ=255)
                                                                                          |                                                                                        
CAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTG  >  NC_000913/2038908‑2039086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTCAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTC  >  NC_000913/2038905‑2039091
                                                                                             |                                                                                             
CTTCAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTG                                                                                               <  SRR4302536.4767383/94‑1 (MQ=60)
CTTCAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTG                                                                                               <  SRR4302536.5959546/94‑1 (MQ=60)
CTTCAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGGCTATCTTGTCGCGATTCTGGCCCCAATACATTG                                                                                               >  SRR4302536.3341186/1‑94 (MQ=60)
  TCAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTC                                                                                             <  SRR4302536.5831847/94‑1 (MQ=60)
  TCAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTC                                                                                             >  SRR4302536.6685263/1‑94 (MQ=60)
   CAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCT                                                                                            >  SRR4302536.5754464/1‑94 (MQ=60)
   CAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCT                                                                                            <  SRR4302536.5635761/94‑1 (MQ=60)
    AACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTG                                                                                           <  SRR4302536.3474795/94‑1 (MQ=60)
    AACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTG                                                                                           >  SRR4302536.3747894/1‑94 (MQ=60)
      CCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTG                                                                                         <  SRR4302536.3233476/94‑1 (MQ=60)
        CAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGT                                                                                       <  SRR4302536.6083452/94‑1 (MQ=60)
        CAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGT                                                                                       >  SRR4302536.6655810/1‑94 (MQ=60)
         AGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTC                                                                                      <  SRR4302536.2069993/94‑1 (MQ=60)
         AGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTC                                                                                      >  SRR4302536.2470471/1‑94 (MQ=60)
         AGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTC                                                                                      <  SRR4302536.2439028/94‑1 (MQ=60)
         AGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTC                                                                                      >  SRR4302536.5582823/1‑94 (MQ=60)
         AGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTC                                                                                      >  SRR4302536.3832217/1‑94 (MQ=60)
          GGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGGCTGTGGTCC                                                                                     <  SRR4302536.6743476/94‑1 (MQ=60)
           GCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCG                                                                                    >  SRR4302536.372167/1‑94 (MQ=60)
           GCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCG                                                                                    <  SRR4302536.4733715/94‑1 (MQ=60)
              ATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGA                                                                                 <  SRR4302536.498958/94‑1 (MQ=60)
                GCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAG                                                                               <  SRR4302536.3425943/94‑1 (MQ=60)
                 CAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGA                                                                              >  SRR4302536.3564381/1‑94 (MQ=60)
                   GCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATT                                                                            <  SRR4302536.5743622/94‑1 (MQ=60)
                    CGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTA                                                                           <  SRR4302536.523171/94‑1 (MQ=60)
                       AAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTT                                                                        >  SRR4302536.2920910/1‑94 (MQ=60)
                        AACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTC                                                                       >  SRR4302536.6104689/1‑94 (MQ=60)
                        AACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTC                                                                       <  SRR4302536.725719/94‑1 (MQ=60)
                        AACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTC                                                                       >  SRR4302536.3752813/1‑94 (MQ=60)
                        AACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTC                                                                       >  SRR4302536.3318780/1‑94 (MQ=60)
                          CTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCAC                                                                     <  SRR4302536.6515756/94‑1 (MQ=60)
                            CGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCG                                                                   >  SRR4302536.6852691/1‑94 (MQ=60)
                             GGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGC                                                                  <  SRR4302536.1153978/94‑1 (MQ=60)
                             GGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGC                                                                  <  SRR4302536.5628318/94‑1 (MQ=60)
                              GCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCA                                                                 <  SRR4302536.304398/94‑1 (MQ=60)
                              GCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCA                                                                 <  SRR4302536.2279452/94‑1 (MQ=60)
                               CAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAG                                                                <  SRR4302536.4536946/94‑1 (MQ=60)
                               CAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAG                                                                >  SRR4302536.6093246/1‑94 (MQ=60)
                               CAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAG                                                                >  SRR4302536.3414198/1‑94 (MQ=60)
                               CAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAG                                                                <  SRR4302536.1318566/94‑1 (MQ=60)
                               CAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCAAATACATTGACTGTGGTCGGTGAAGATTATTTCACCGCAG                                                                >  SRR4302536.1383082/1‑94 (MQ=60)
                                AAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCTCGATTCTTGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGC                                                               >  SRR4302536.5351272/1‑94 (MQ=60)
                                AAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGC                                                               >  SRR4302536.5817559/1‑94 (MQ=60)
                                AAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGC                                                               >  SRR4302536.6854325/1‑94 (MQ=60)
                                AAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGC                                                               >  SRR4302536.15225/1‑94 (MQ=60)
                                AAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTAACCGCAGC                                                               >  SRR4302536.3856945/1‑94 (MQ=60)
                                 AGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCC                                                              <  SRR4302536.5177826/94‑1 (MQ=60)
                                 AGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCC                                                              <  SRR4302536.968379/94‑1 (MQ=60)
                                  GCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCG                                                             <  SRR4302536.6724147/94‑1 (MQ=60)
                                  GCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCG                                                             <  SRR4302536.6219682/94‑1 (MQ=60)
                                  GCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCG                                                             >  SRR4302536.1590863/1‑94 (MQ=60)
                                    ACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCT                                                           >  SRR4302536.5068552/1‑94 (MQ=60)
                                     CTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTC                                                          >  SRR4302536.3396190/1‑94 (MQ=60)
                                      TGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCA                                                         >  SRR4302536.6641038/1‑94 (MQ=60)
                                         CAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCT                                                      >  SRR4302536.5559575/1‑94 (MQ=60)
                                         CAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCT                                                      >  SRR4302536.168813/1‑94 (MQ=60)
                                         CAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCT                                                      >  SRR4302536.6328328/1‑94 (MQ=60)
                                         CAACAGTTGCATAATTTCGTCTATCTTGCCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCT                                                      >  SRR4302536.6798127/1‑94 (MQ=60)
                                          AACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCGCCGCAGCCGCTCATCTA                                                     <  SRR4302536.6149586/94‑1 (MQ=60)
                                          AACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTA                                                     <  SRR4302536.1437904/94‑1 (MQ=60)
                                           ACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTAC                                                    <  SRR4302536.5920846/94‑1 (MQ=60)
                                           ACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTAC                                                    <  SRR4302536.1073058/94‑1 (MQ=60)
                                           ACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTAC                                                    <  SRR4302536.2931529/94‑1 (MQ=60)
                                            CAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACTGCAGCCGCTCATCTACG                                                   >  SRR4302536.1686120/1‑94 (MQ=60)
                                            CAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACG                                                   <  SRR4302536.3678630/94‑1 (MQ=60)
                                            CAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACG                                                   <  SRR4302536.195236/94‑1 (MQ=60)
                                             AGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGC                                                  >  SRR4302536.1313385/1‑94 (MQ=60)
                                             AGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGC                                                  >  SRR4302536.4566308/1‑94 (MQ=60)
                                              GTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCT                                                 <  SRR4302536.780530/94‑1 (MQ=60)
                                                TGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGG                                               >  SRR4302536.4191169/1‑94 (MQ=60)
                                                TGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGG                                               >  SRR4302536.6903067/1‑94 (MQ=60)
                                                TGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGG                                               >  SRR4302536.3253308/1‑94 (MQ=60)
                                                 GCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGG                                              >  SRR4302536.20820/1‑94 (MQ=60)
                                                  CATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGC                                             >  SRR4302536.2474151/1‑94 (MQ=60)
                                                   ATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCT                                            <  SRR4302536.6119013/94‑1 (MQ=60)
                                                    TAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGGTG                                           >  SRR4302536.2413326/1‑94 (MQ=60)
                                                    TAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTG                                           <  SRR4302536.4821691/94‑1 (MQ=60)
                                                    TAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTG                                           >  SRR4302536.3537243/1‑94 (MQ=60)
                                                       TTTCGTCTATCTTGTCGCGATTCTGGCCCCAATGCATTGTCTGTGGTCCGTCAAGATTATTTCCCCGCATCCGCTCATCTACGCTGGGCTGGCT                                        <  SRR4302536.5533062/94‑1 (MQ=60)
                                                          CGTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTA                                     >  SRR4302536.3883922/1‑94 (MQ=60)
                                                           GTCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTAC                                    >  SRR4302536.3275235/1‑94 (MQ=60)
                                                            TCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACT                                   >  SRR4302536.3791374/1‑94 (MQ=60)
                                                            TCTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACT                                   <  SRR4302536.428129/94‑1 (MQ=60)
                                                             CTATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTG                                  >  SRR4302536.3552483/1‑94 (MQ=60)
                                                             CTATCTTGTCGCGATTCTGGCCCCAATACATTGTATGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTG                                  >  SRR4302536.5460403/1‑94 (MQ=60)
                                                               ATCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCT                                >  SRR4302536.956691/1‑94 (MQ=60)
                                                                TCTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTT                               <  SRR4302536.2283207/94‑1 (MQ=60)
                                                                 CTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTT                              >  SRR4302536.4474653/1‑94 (MQ=60)
                                                                 CTTGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTT                              <  SRR4302536.6346840/94‑1 (MQ=60)
                                                                   TGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTA                            <  SRR4302536.3398962/94‑1 (MQ=60)
                                                                   TGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTA                            <  SRR4302536.5985235/94‑1 (MQ=60)
                                                                   TGTCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTA                            <  SRR4302536.3003777/94‑1 (MQ=60)
                                                                     TCGCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGC                          >  SRR4302536.2791954/1‑94 (MQ=60)
                                                                       GCGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCT                        >  SRR4302536.1112055/1‑94 (MQ=60)
                                                                        CGATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTT                       >  SRR4302536.4754277/1‑94 (MQ=60)
                                                                         GATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTA                      >  SRR4302536.3062535/1‑94 (MQ=60)
                                                                          ATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTAC                     <  SRR4302536.5208641/94‑1 (MQ=60)
                                                                          ATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTAC                     >  SRR4302536.3471042/1‑94 (MQ=60)
                                                                          ATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTAC                     <  SRR4302536.6438076/94‑1 (MQ=60)
                                                                          ATTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTAC                     >  SRR4302536.3966757/1‑94 (MQ=60)
                                                                           TTCTGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACG                    <  SRR4302536.5958024/94‑1 (MQ=60)
                                                                              TGGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTA                 >  SRR4302536.1140461/1‑94 (MQ=60)
                                                                               GGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTAT                >  SRR4302536.6122084/1‑94 (MQ=60)
                                                                               GGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTAT                >  SRR4302536.4257298/1‑94 (MQ=60)
                                                                               GGCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTAT                <  SRR4302536.2567294/94‑1 (MQ=60)
                                                                                GCCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATA               <  SRR4302536.442689/94‑1 (MQ=60)
                                                                                 CCCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAA              >  SRR4302536.4539292/1‑94 (MQ=60)
                                                                                  CCCAATACATTGTCTGTGGTCCGTGAAGATTATTTTACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTTGCCTTACGGTATAAG             >  SRR4302536.1800437/1‑94 (MQ=60)
                                                                                  CCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAG             >  SRR4302536.3678362/1‑94 (MQ=60)
                                                                                  CCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAG             >  SRR4302536.1999010/1‑94 (MQ=60)
                                                                                  CCCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAG             >  SRR4302536.2366430/1‑94 (MQ=60)
                                                                                   CCAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGA            >  SRR4302536.2458124/1‑94 (MQ=60)
                                                                                    CAATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAA           >  SRR4302536.6115563/1‑94 (MQ=60)
                                                                                     AATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAG          >  SRR4302536.1148734/1‑94 (MQ=60)
                                                                                     AATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAG          >  SRR4302536.2691545/1‑94 (MQ=60)
                                                                                     AATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAG          <  SRR4302536.5346791/94‑1 (MQ=60)
                                                                                      ATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGT         >  SRR4302536.3467006/1‑94 (MQ=60)
                                                                                      ATACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGT         >  SRR4302536.1763835/1‑94 (MQ=60)
                                                                                       TACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTT        <  SRR4302536.2269389/94‑1 (MQ=60)
                                                                                       TACATTGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTT        <  SRR4302536.1837798/94‑1 (MQ=60)
                                                                                            TGTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTT   <  SRR4302536.5530053/94‑1 (MQ=60)
                                                                                             GTCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTC  <  SRR4302536.428596/94‑1 (MQ=60)
                                                                                             |                                                                                             
CTTCAACCCAGGCGATGCAGCGAAAACTCGGCAAGCACTGGCAACAGTTGCATAATTTCGTCTATCTTGTCGCGATTCTGGCCCCAATACATTATCTGTGGTCCGTGAAGATTATTTCACCGCAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTC  >  NC_000913/2038905‑2039091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑