Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,255,784	G→A	P202S (CCG→TCG)	yeiN ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,255,784	0	G	A	100.0%	805.2 / NA	214	P202S (CCG→TCG)	yeiN	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (80/134); total (80/134)

Only 100 of 221 total aligned reads displayed.

GAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGGGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATC  >  NC_000913/2255695‑2255873

gAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCt                                                                                        <  2:1488713/93‑1 (MQ=255)

 aGGCCCCCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTg                                                                                       <  1:3484767/93‑1 (MQ=255)

 aGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTg                                                                                       >  2:1643255/1‑93 (MQ=255)

 aGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTg                                                                                       >  1:4150375/1‑93 (MQ=255)

  ggCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTgg                                                                                      <  2:2552989/93‑1 (MQ=255)

  gcccACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTgg                                                                                      <  2:2778860/91‑1 (MQ=255)

   gCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGt                                                                                     <  1:1039627/93‑1 (MQ=255)

   gCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGt                                                                                     <  2:6366058/93‑1 (MQ=255)

   gCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGt                                                                                     <  1:626244/93‑1 (MQ=255)

    ccACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTg                                                                                    <  1:662379/93‑1 (MQ=255)

    ccACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTg                                                                                    <  1:5939977/93‑1 (MQ=255)

    ccACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTg                                                                                    <  2:534336/93‑1 (MQ=255)

     cACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGc                                                                                   >  1:408281/1‑93 (MQ=255)

      aCCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCACACGAGCTGGTGCg                                                                                  >  2:2265080/1‑93 (MQ=255)

       ccGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCgg                                                                                 >  1:4810236/1‑93 (MQ=255)

       ccGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCgg                                                                                 >  1:91043/1‑93 (MQ=255)

         gTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCa                                                                               <  2:1310956/93‑1 (MQ=255)

         gTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCa                                                                               >  1:6577647/1‑93 (MQ=255)

          ttCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAg                                                                              >  1:3038945/1‑93 (MQ=255)

             aGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGaaa                                                                           >  1:3168091/1‑93 (MQ=255)

             aGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGaaa                                                                           <  1:4452445/93‑1 (MQ=255)

               aCCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGaaaaa                                                                         <  1:2986092/93‑1 (MQ=255)

               aCCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGaaaaa                                                                         >  1:6653700/1‑93 (MQ=255)

               aCCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGaaaaa                                                                         <  1:2132750/93‑1 (MQ=255)

               aCCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGaaaaa                                                                         >  2:5413466/1‑93 (MQ=255)

                ccGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAAc                                                                        <  2:4906885/93‑1 (MQ=255)

                  gCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACgc                                                                      >  2:6555757/1‑93 (MQ=255)

                   cTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACgca                                                                     <  2:3611948/93‑1 (MQ=255)

                   cTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACgca                                                                     >  1:5328914/1‑93 (MQ=255)

                   cTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACgca                                                                     <  2:366798/93‑1 (MQ=255)

                    tttGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACgcag                                                                    <  1:2059615/93‑1 (MQ=255)

                     ttGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACgcagg                                                                   >  1:3672417/1‑93 (MQ=255)

                     ttGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACgcagg                                                                   >  2:5431946/1‑93 (MQ=255)

                       gCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACgcaggca                                                                 >  1:2151301/1‑93 (MQ=255)

                       gCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACgcaggca                                                                 <  1:3417931/93‑1 (MQ=255)

                         cATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAgc                                                               <  2:6174289/93‑1 (MQ=255)

                          aTTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAACCGAACTGGTGCGGCAGAAAAACccacgcagag                                                              >  1:3074696/1‑91 (MQ=255)

                          aTTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGACAAAAGCAGGCAgcg                                                              >  2:6291673/1‑93 (MQ=255)

                           tttCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAgcgc                                                             <  2:344352/93‑1 (MQ=255)

                            ttCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCt                                                            >  1:1603635/1‑93 (MQ=255)

                             tCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCtt                                                           >  1:4862872/1‑93 (MQ=255)

                             tCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCtt                                                           <  1:1288808/93‑1 (MQ=255)

                             tCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCtt                                                           <  2:1743104/93‑1 (MQ=255)

                              caccacCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCttt                                                          >  2:4562770/1‑93 (MQ=255)

                              caccacCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCttt                                                          <  1:3112315/93‑1 (MQ=255)

                               accaccATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTa                                                         <  2:1003083/93‑1 (MQ=255)

                                ccaccaTTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAg                                                        <  1:1462402/93‑1 (MQ=255)

                                ccaccaTTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAg                                                        >  1:2551978/1‑93 (MQ=255)

                                  accaTTGCACGGGGAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTc                                                      <  1:4725015/93‑1 (MQ=255)

                                  accaTTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTc                                                      <  1:2702299/93‑1 (MQ=255)

                                       tGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATa                                                 <  1:2395495/93‑1 (MQ=255)

                                        gCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAg                                                <  2:2428671/93‑1 (MQ=255)

                                         cACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGc                                               <  2:4284443/93‑1 (MQ=255)

                                            gggCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCaa                                            <  1:1854375/93‑1 (MQ=255)

                                              gCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAAtt                                          <  2:4035449/93‑1 (MQ=255)

                                              gCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAAtt                                          <  1:4228319/93‑1 (MQ=255)

                                                aaTTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTaa                                        >  1:6369182/1‑93 (MQ=255)

                                                aaTTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTaa                                        <  1:1186736/93‑1 (MQ=255)

                                                 aTTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAAc                                       >  1:5718666/1‑93 (MQ=255)

                                                 aTTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAAc                                       <  2:5682646/93‑1 (MQ=255)

                                                 aTTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAAc                                       >  2:5937693/1‑93 (MQ=255)

                                                 aTTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAAc                                       <  1:1086449/93‑1 (MQ=255)

                                                 aTTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAAc                                       >  1:1075701/1‑93 (MQ=255)

                                                    tCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGc                                    >  1:6474053/1‑93 (MQ=255)

                                                     ggCTGGGCCTGTCGAGACGAATGGTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTATAGTCTGATAGCCATTTAACGGct                                   <  1:4192120/92‑2 (MQ=255)

                                                     cGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGca                                   <  1:3314808/93‑1 (MQ=255)

                                                       cTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGcaca                                 >  2:3277699/1‑93 (MQ=255)

                                                       cTGGCCCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCTCTTTAGTCTGATAGCCAATTAACGGcaca                                 <  1:142133/93‑1 (MQ=255)

                                                        tGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCacac                                >  2:6713612/1‑93 (MQ=255)

                                                         ggCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACAcc                               <  2:813862/93‑1 (MQ=255)

                                                         ggCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACAcc                               >  2:2470863/1‑93 (MQ=255)

                                                              tGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAgg                          >  1:4624282/1‑93 (MQ=255)

                                                                   agaCGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCt                     <  1:6145374/93‑1 (MQ=255)

                                                                    gaCGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTa                    <  2:2390001/93‑1 (MQ=255)

                                                                      cGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTaaa                  <  1:694601/93‑1 (MQ=255)

                                                                      cGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTaaa                  >  1:596043/1‑93 (MQ=255)

                                                                       gAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAAt                 >  1:2995269/1‑93 (MQ=255)

                                                                        aaTGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGGCAATTAACGGCACACCGAAGGTTTCTAAATa                >  2:718784/1‑93 (MQ=255)

                                                                         aTGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATAc               >  2:5596473/1‑93 (MQ=255)

                                                                           gCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTc             <  1:2084632/93‑1 (MQ=255)

                                                                              gACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGt          >  2:2676634/1‑93 (MQ=255)

                                                                              gACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGt          <  2:4762518/93‑1 (MQ=255)

                                                                               aCGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTg         <  2:2099430/93‑1 (MQ=255)

                                                                               aCGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTg         <  1:55616/93‑1 (MQ=255)

                                                                               aCGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGCTTCTAAATACTCAGTg         >  1:3445911/1‑93 (MQ=255)

                                                                                cGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTgg        <  2:6008719/93‑1 (MQ=255)

                                                                                 gTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGt       <  2:3592535/93‑1 (MQ=255)

                                                                                  tCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTTATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGtt      <  2:2751839/93‑1 (MQ=255)

                                                                                  tCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGtt      >  1:4957332/1‑93 (MQ=255)

                                                                                  tCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGtt      <  2:6137474/93‑1 (MQ=255)

                                                                                  tCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGtt      <  1:6416028/93‑1 (MQ=255)

                                                                                   cAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTa     <  1:5501408/93‑1 (MQ=255)

                                                                                   cAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTa     <  1:2941797/93‑1 (MQ=255)

                                                                                   cAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGATa     >  2:5561897/1‑93 (MQ=255)

                                                                                    aaaCGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTaa    <  1:3955801/93‑1 (MQ=255)

                                                                                    aaaCGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTaa    <  1:1531218/93‑1 (MQ=255)

                                                                                     aaCGAGCTGGTGCGGCAGAAAAGCGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAAt   <  2:5069190/93‑1 (MQ=255)

                                                                                      aCGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATc  <  2:5053166/93‑1 (MQ=255)

                                                                                      aCGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATc  <  2:2955979/93‑1 (MQ=255)

                                                                                      aCGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATc  >  1:6513029/1‑93 (MQ=255)

GAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGGGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATC  >  NC_000913/2255695‑2255873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCACGAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGGGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATCCT  >  NC_000913/2255691‑2255875

CCACGAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGA                                                                                             >  SRR4302536.5475066/1‑94 (MQ=60)

 CAAGAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTGGAGACGAATGCTGACGTCAAACGAG                                                                                            <  SRR4302536.3306047/94‑1 (MQ=60)

    TAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTG                                                                                         >  SRR4302536.4195/1‑94 (MQ=60)

    GAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTG                                                                                         <  SRR4302536.1112975/94‑1 (MQ=60)

    GAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTG                                                                                         >  SRR4302536.4273550/1‑94 (MQ=60)

     agcccacaattcacACCGCTCTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCTGTGTCGAGACAAATGCTGACGTCAAACGAGCTGG                                                                                        <  SRR4302536.337959/80‑1 (MQ=60)

     AGGCCCCCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGG                                                                                        <  SRR4302536.3588692/94‑1 (MQ=60)

     AGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGG                                                                                        <  SRR4302536.1021031/94‑1 (MQ=60)

     AGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGG                                                                                        <  SRR4302536.5040991/94‑1 (MQ=60)

     AGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGG                                                                                        >  SRR4302536.848583/1‑94 (MQ=60)

      GGCCACCGTTCAGACCGCTTTGCCNTTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGT                                                                                       <  SRR4302536.1104550/94‑1 (MQ=60)

       GCCACCGTTCAGACCGCTTTGCTATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTG                                                                                      <  SRR4302536.6292790/94‑1 (MQ=60)

       GCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTG                                                                                      <  SRR4302536.644813/94‑1 (MQ=60)

       GCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTG                                                                                      <  SRR4302536.1070499/94‑1 (MQ=60)

        CCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGC                                                                                     <  SRR4302536.6116944/94‑1 (MQ=60)

        CCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGC                                                                                     <  SRR4302536.5058575/94‑1 (MQ=60)

        CCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGC                                                                                     <  SRR4302536.681803/94‑1 (MQ=60)

        CCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGC                                                                                     >  SRR4302536.419049/1‑94 (MQ=60)

         CACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCG                                                                                    <  SRR4302536.3713154/94‑1 (MQ=60)

          ACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTTTCGAGACGAATGCTGACGTCCAACCAGCTGGTGCGG                                                                                   >  SRR4302536.3504834/1‑94 (MQ=60)

          ACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGG                                                                                   >  SRR4302536.4954997/1‑94 (MQ=60)

          ACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGG                                                                                   >  SRR4302536.93469/1‑94 (MQ=60)

            CGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCA                                                                                 >  SRR4302536.6773402/1‑94 (MQ=60)

             GTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAG                                                                                >  SRR4302536.3128300/1‑94 (MQ=60)

             GTTCAGACCGCTTTGACATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAA                                                                                >  SRR4302536.4179445/1‑94 (MQ=60)

                CAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAA                                                                             >  SRR4302536.3260908/1‑94 (MQ=60)

                 AGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAA                                                                            <  SRR4302536.4586176/94‑1 (MQ=60)

                 AGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAA                                                                            >  SRR4302536.4951935/1‑94 (MQ=60)

                  GACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAA                                                                           >  SRR4302536.6851472/1‑94 (MQ=60)

                  GACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAA                                                                           <  SRR4302536.3116624/94‑1 (MQ=60)

                   ACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAAC                                                                          <  SRR4302536.2522433/94‑1 (MQ=60)

                   ACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAAC                                                                          <  SRR4302536.3073966/94‑1 (MQ=60)

                   ACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAAC                                                                          <  SRR4302536.6730651/94‑1 (MQ=60)

                   ACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAAC                                                                          <  SRR4302536.1580974/94‑1 (MQ=60)

                   ACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAAC                                                                          >  SRR4302536.2198752/1‑94 (MQ=60)

                   ACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAAC                                                                          <  SRR4302536.2196764/94‑1 (MQ=60)

                   ACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACAAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAAC                                                                          <  SRR4302536.6688397/94‑1 (MQ=60)

                      GCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCA                                                                       >  SRR4302536.5488134/1‑94 (MQ=60)

                      GCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCA                                                                       <  SRR4302536.6644153/94‑1 (MQ=60)

                        TTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGG                                                                     >  SRR4302536.4299938/1‑94 (MQ=60)

                        TTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGG                                                                     >  SRR4302536.3782214/1‑94 (MQ=60)

                        TTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGG                                                                     <  SRR4302536.2121642/94‑1 (MQ=60)

                        TTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGG                                                                     <  SRR4302536.5007512/94‑1 (MQ=60)

                        TTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGG                                                                     <  SRR4302536.3261453/94‑1 (MQ=60)

                          TGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCA                                                                   >  SRR4302536.2215915/1‑94 (MQ=60)

                           GCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAG                                                                  <  SRR4302536.3519658/94‑1 (MQ=60)

                             CATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAACCGAACTGGTGCGGCAGAAAAACccacgcagag                                                                >  SRR4302536.3164744/1‑84 (MQ=60)

                             CATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCG                                                                >  SRR4302536.2282896/1‑94 (MQ=60)

                               TTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCT                                                              >  SRR4302536.1650430/1‑94 (MQ=60)

                                TTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTT                                                             >  SRR4302536.5009203/1‑94 (MQ=60)

                                 TCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTT                                                            <  SRR4302536.5735689/94‑1 (MQ=60)

                                 TCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTT                                                            <  SRR4302536.1327363/94‑1 (MQ=60)

                                 TCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTT                                                            <  SRR4302536.4426493/94‑1 (MQ=60)

                                  CACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTA                                                           <  SRR4302536.3203208/94‑1 (MQ=60)

                                  CACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTA                                                           >  SRR4302536.653927/1‑94 (MQ=60)

                                  CACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTA                                                           >  SRR4302536.6781444/1‑94 (MQ=60)

                                   ACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAG                                                          >  SRR4302536.2628820/1‑94 (MQ=60)

                                    CCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGT                                                         <  SRR4302536.1505674/94‑1 (MQ=60)

                                    CCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGT                                                         >  SRR4302536.2621855/1‑94 (MQ=60)

                                     ctcgattgcacggctgATTTCGCTGGCTATGTCGAGACGAATGGGGAAGTAAAACGAGCTGGTGCGGCATAAAAACGCAGGCAGCGCTTTAGTC                                                        <  SRR4302536.2474946/78‑1 (MQ=35)

                                      ACCATTGCACGGGGAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCT                                                       <  SRR4302536.4867172/94‑1 (MQ=60)

                                      ACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCT                                                       <  SRR4302536.3149159/94‑1 (MQ=60)

                                      ACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCT                                                       >  SRR4302536.4424619/1‑94 (MQ=60)

                                      ACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCT                                                       <  SRR4302536.2782910/94‑1 (MQ=60)

                                       CCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTG                                                      <  SRR4302536.3550355/94‑1 (MQ=60)

                                        CATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGATTTAGTCTGA                                                     >  SRR4302536.4032155/1‑94 (MQ=60)

                                        CATTGCACGGGCAATTTAGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCCGCGCTTTAGTCTGA                                                     >  SRR4302536.5304782/1‑94 (MQ=60)

                                         ATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGAT                                                    <  SRR4302536.3068013/94‑1 (MQ=60)

                                         ATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGAT                                                    <  SRR4302536.6783426/94‑1 (MQ=60)

                                           TGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAG                                                  <  SRR4302536.2822061/94‑1 (MQ=60)

                                           TGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAG                                                  <  SRR4302536.2468011/94‑1 (MQ=60)

                                             CACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCC                                                >  SRR4302536.3985971/1‑94 (MQ=60)

                                              ACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCA                                               <  SRR4302536.2662684/94‑1 (MQ=60)

                                               CGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAA                                              >  SRR4302536.6015569/1‑94 (MQ=60)

                                                GGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAAT                                             <  SRR4302536.1910252/94‑1 (MQ=60)

                                                  GCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTA                                           <  SRR4302536.4354129/94‑1 (MQ=60)

                                                   CAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAA                                          >  SRR4302536.6558983/1‑94 (MQ=60)

                                                    AATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAAC                                         >  SRR4302536.5888727/1‑94 (MQ=60)

                                                    AATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAAC                                         >  SRR4302536.1107893/1‑94 (MQ=60)

                                                    AATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAAC                                         <  SRR4302536.1222440/94‑1 (MQ=60)

                                                     ATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACG                                        <  SRR4302536.1119015/94‑1 (MQ=60)

                                                       TTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGC                                      >  SRR4302536.6667263/1‑94 (MQ=60)

                                                         ggctgggcCTGTCGAGACGAATGGTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTATAGTCTGATAGCCATTTAACGGCTC                                    <  SRR4302536.4316699/86‑1 (MQ=60)

                                                         CGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCAC                                    <  SRR4302536.3412786/94‑1 (MQ=60)

                                                          GCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACA                                   >  SRR4302536.5506629/1‑94 (MQ=60)

                                                           CTGGCCCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCTCTTTAGTCTGATAGCCAATTAACGGCACAC                                  <  SRR4302536.145835/94‑1 (MQ=60)

                                                            TGGCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACC                                 <  SRR4302536.3179614/94‑1 (MQ=60)

                                                              GCGCTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGA                               <  SRR4302536.5183462/94‑1 (MQ=60)

                                                               CGCTGTCGAGCCGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAA                              <  SRR4302536.2014592/94‑1 (MQ=60)

                                                                 CTGTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGG                            >  SRR4302536.4763246/1‑94 (MQ=60)

                                                                   GTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTACCGGCACACCGAAGGTT                          <  SRR4302536.5666821/94‑1 (MQ=60)

                                                                   GTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTT                          <  SRR4302536.4594303/94‑1 (MQ=60)

                                                                   GTCGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTT                          <  SRR4302536.6369483/94‑1 (MQ=60)

                                                                     CGAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTC                        >  SRR4302536.3546466/1‑94 (MQ=60)

                                                                      GAGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCT                       <  SRR4302536.1365749/94‑1 (MQ=60)

                                                                       AGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTA                      <  SRR4302536.6328471/94‑1 (MQ=60)

                                                                       AGACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGCGTCTA                      >  SRR4302536.4795150/1‑94 (MQ=60)

                                                                        GACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAA                     >  SRR4302536.2153646/1‑94 (MQ=60)

                                                                         ACGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAA                    >  SRR4302536.612597/1‑94 (MQ=60)

                                                                          CGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAAT                   <  SRR4302536.714895/94‑1 (MQ=60)

                                                                          CGAATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAAT                   >  SRR4302536.3083366/1‑94 (MQ=60)

                                                                             ATGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACT                <  SRR4302536.4319066/94‑1 (MQ=60)

                                                                              TGCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTC               <  SRR4302536.3287144/94‑1 (MQ=60)

                                                                               GCTGACGTCAAACGAGCTGGTGCGGCAGAAACACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATCCTCA              <  SRR4302536.1139199/94‑1 (MQ=60)

                                                                               GCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCA              <  SRR4302536.2147378/94‑1 (MQ=60)

                                                                               GCTGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCA              <  SRR4302536.1331342/94‑1 (MQ=60)

                                                                                 TGACGTCAACCGAGCTGGTGCGGAAGAAAAACGCAGGCAGCGCTTTAGTCAGATAGCCAATTAACGGCACACCGAAGGGTTCTAAATCCTCAGG            <  SRR4302536.1634981/94‑1 (MQ=60)

                                                                                 TGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGT            <  SRR4302536.1724924/94‑1 (MQ=60)

                                                                                 TGACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGT            >  SRR4302536.3075504/1‑94 (MQ=60)

                                                                                  GACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGCTTCTAAATACTCAGTG           >  SRR4302536.3548536/1‑94 (MQ=60)

                                                                                   ACGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGG          <  SRR4302536.57165/94‑1 (MQ=60)

                                                                                    CGTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGT         <  SRR4302536.5745349/94‑1 (MQ=60)

                                                                                     GTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCTCTTTAGTCTGATAGCAAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTT        <  SRR4302536.6493622/94‑1 (MQ=60)

                                                                                     GTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTT        <  SRR4302536.2135938/94‑1 (MQ=60)

                                                                                     GTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTT        <  SRR4302536.705397/94‑1 (MQ=60)

                                                                                     GTCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTT        >  SRR4302536.5106289/1‑94 (MQ=60)

                                                                                      TCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTA       <  SRR4302536.1278438/94‑1 (MQ=60)

                                                                                      TCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTA       <  SRR4302536.6607756/94‑1 (MQ=60)

                                                                                      TCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTA       <  SRR4302536.6607757/94‑1 (MQ=60)

                                                                                      TCAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTA       >  SRR4302536.3111608/1‑94 (MQ=60)

                                                                                       CAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAA      >  SRR4302536.324432/1‑94 (MQ=60)

                                                                                       CAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAA      <  SRR4302536.5665545/94‑1 (MQ=60)

                                                                                       CAAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAA      <  SRR4302536.3028544/94‑1 (MQ=60)

                                                                                        AAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAAT     <  SRR4302536.1576273/94‑1 (MQ=60)

                                                                                        AAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAAT     >  SRR4302536.2037476/1‑94 (MQ=60)

                                                                                        AAACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAAT     <  SRR4302536.4073264/94‑1 (MQ=60)

                                                                                         AACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATC    <  SRR4302536.611797/94‑1 (MQ=60)

                                                                                         AACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATC    >  SRR4302536.6707105/1‑94 (MQ=60)

                                                                                         AACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATC    >  SRR4302536.1492226/1‑94 (MQ=60)

                                                                                         AACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCACTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATC    <  SRR4302536.6825918/94‑1 (MQ=60)

                                                                                          ACGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATCC   <  SRR4302536.1552679/94‑1 (MQ=60)

                                                                                           CGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATCCT  <  SRR4302536.1342541/94‑1 (MQ=60)

                                                                                           CGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATCCT  <  SRR4302536.193120/94‑1 (MQ=60)

                                                                                           CGAGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGATTCTAAATACTCAGTGGTTAATCCT  >  SRR4302536.1046572/1‑94 (MQ=60)

CCACGAGGCCACCGTTCAGACCGCTTTGCCATTTCACCACCATTGCACGGGCAATTTCGCTGGCGCTGTCGAGACGAATGCTGACGTCAAACGGGCTGGTGCGGCAGAAAAACGCAGGCAGCGCTTTAGTCTGATAGCCAATTAACGGCACACCGAAGGTTTCTAAATACTCAGTGGTTAATCCT  >  NC_000913/2255691‑2255875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`