Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,289,112	T→C	V198A (GTC→GCC)	narP →	nitrate/nitrite response regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,289,112	0	T	C	100.0%	867.3 / NA	265	V198A (GTC→GCC)	narP	nitrate/nitrite response regulator
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (166/99); total (166/99)

Only 100 of 272 total aligned reads displayed.

GGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGAT  >  NC_000913/2289022‑2289201

ggCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGccc                                                                                         <  1:5502176/93‑1 (MQ=255)

  cTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGc                                                                                       >  2:1756019/1‑93 (MQ=255)

   tGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCt                                                                                      <  1:1683677/93‑1 (MQ=255)

    gTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTc                                                                                     >  2:6152684/1‑93 (MQ=255)

     tCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCa                                                                                    >  2:2865511/1‑93 (MQ=255)

      cAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAc                                                                                   >  1:4968601/1‑93 (MQ=255)

      cAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAc                                                                                   <  2:221262/93‑1 (MQ=255)

       aaaTAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAcg                                                                                  >  2:3466614/1‑93 (MQ=255)

        aaTAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAcgc                                                                                 <  2:690173/93‑1 (MQ=255)

        aaTAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAcgc                                                                                 >  2:1591457/1‑93 (MQ=255)

        aaTAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAcgc                                                                                 >  2:2982063/1‑93 (MQ=255)

         aTAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAcgcg                                                                                <  2:1152723/93‑1 (MQ=255)

         aTAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAcgcg                                                                                >  2:861666/1‑93 (MQ=255)

          tAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGt                                                                               >  2:1041421/1‑93 (MQ=255)

            aaCAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTgg                                                                             >  1:1778055/1‑93 (MQ=255)

             aCAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTggc                                                                            >  1:1644558/1‑93 (MQ=255)

             aCAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTggc                                                                            >  1:5714522/1‑93 (MQ=255)

                  ttGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGcca                                                                       >  1:2675209/1‑93 (MQ=255)

                    gCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGccacc                                                                     >  2:649417/1‑93 (MQ=255)

                      cTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCAt                                                                   >  2:3696527/1‑93 (MQ=255)

                        cGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTc                                                                 <  2:2947145/93‑1 (MQ=255)

                        cGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTc                                                                 <  1:1098117/93‑1 (MQ=255)

                          gtgtTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTg                                                               <  2:5610605/93‑1 (MQ=255)

                          gtgtTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTg                                                               <  1:1822896/93‑1 (MQ=255)

                           tgtTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGt                                                              <  1:3589215/93‑1 (MQ=255)

                            gtTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGtt                                                             >  1:1168316/1‑93 (MQ=255)

                            gtTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGtt                                                             >  2:4230401/1‑93 (MQ=255)

                            gtTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGtt                                                             >  2:5150811/1‑93 (MQ=255)

                            gtTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGtt                                                             <  2:5939752/93‑1 (MQ=255)

                             ttGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTc                                                            >  1:5033393/1‑93 (MQ=255)

                              tGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTcc                                                           >  1:2246391/1‑93 (MQ=255)

                              tGAATATTTCCGAGCAGACAGTAAAAGTACATATTAGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTcc                                                           >  1:4680487/1‑93 (MQ=255)

                                 atatTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGc                                                        >  1:6378080/1‑93 (MQ=255)

                                   atTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGcaa                                                      >  1:172267/1‑93 (MQ=255)

                                    tttCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGcaac                                                     >  2:3373147/1‑93 (MQ=255)

                                    tttCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGcaac                                                     >  2:3972293/1‑93 (MQ=255)

                                      tCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGcaacaa                                                   <  2:6395996/93‑1 (MQ=255)

                                      tCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGcaacaa                                                   <  1:4442604/93‑1 (MQ=255)

                                       ccGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCaacaac                                                  >  2:4724892/1‑93 (MQ=255)

                                          aGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAAcgcg                                               <  1:1312433/93‑1 (MQ=255)

                                          aGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAAcgcg                                               <  2:4304658/93‑1 (MQ=255)

                                          aGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAAcgcg                                               >  2:1141966/1‑93 (MQ=255)

                                           gCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCgg                                              <  1:5969283/93‑1 (MQ=255)

                                           gCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCgg                                              <  1:247101/93‑1 (MQ=255)

                                             aGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCgggg                                            >  2:3198576/1‑93 (MQ=255)

                                             aGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCgggg                                            >  1:3191203/1‑93 (MQ=255)

                                             aGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCgggg                                            >  1:589735/1‑93 (MQ=255)

                                             aGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCgggg                                            >  1:191325/1‑93 (MQ=255)

                                             aGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCgggg                                            >  2:2297805/1‑93 (MQ=255)

                                              gACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGc                                           <  1:3060688/93‑1 (MQ=255)

                                              gACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAAACCGGGGc                                           >  2:491921/1‑93 (MQ=255)

                                                cAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGcac                                         <  2:6659768/93‑1 (MQ=255)

                                                cAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGcac                                         >  1:2908047/1‑93 (MQ=255)

                                                 aGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGcaca                                        <  2:2639475/93‑1 (MQ=255)

                                                  gTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCTTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACaa                                       <  2:332498/93‑1 (MQ=255)

                                                  gTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACaa                                       >  1:393511/1‑93 (MQ=255)

                                                  gTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACaa                                       <  2:4971967/93‑1 (MQ=255)

                                                   tAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAAt                                      >  1:2767955/1‑93 (MQ=255)

                                                   tAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAAt                                      >  1:5415638/1‑93 (MQ=255)

                                                   tAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAAt                                      >  2:6375844/1‑93 (MQ=255)

                                                   tAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAAt                                      >  2:6187336/1‑93 (MQ=255)

                                                   tAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAAt                                      >  1:859397/1‑93 (MQ=255)

                                                     aaaGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATaa                                    >  2:2470077/1‑93 (MQ=255)

                                                     aaaGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATaa                                    >  1:3698858/1‑93 (MQ=255)

                                                      aaGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATaaa                                   <  1:6513070/93‑1 (MQ=255)

                                                      aaGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGAGGCACAATaaa                                   <  1:3433330/93‑1 (MQ=255)

                                                        atACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATaaaaa                                 <  2:5432317/92‑1 (MQ=255)

                                                          aCATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATa                               <  2:4775392/93‑1 (MQ=255)

                                                           cATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAg                              >  2:1365564/1‑93 (MQ=255)

                                                            atatTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGc                             <  2:5981193/93‑1 (MQ=255)

                                                             tactCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGcc                            >  1:1535150/4‑93 (MQ=255)

                                                              atTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGccc                           <  1:2036204/93‑1 (MQ=255)

                                                               ttCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCg                          <  2:4425231/93‑1 (MQ=255)

                                                                tCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGa                         <  2:2994289/93‑1 (MQ=255)

                                                                    aaTCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGa                     >  2:1452682/1‑93 (MQ=255)

                                                                    aaTCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGa                     >  2:4094773/1‑93 (MQ=255)

                                                                    aaTCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGa                     >  2:5523931/1‑93 (MQ=255)

                                                                    aaTCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATCCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGa                     >  2:521043/1‑93 (MQ=255)

                                                                     aTCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGAt                    >  1:77458/1‑93 (MQ=255)

                                                                     aTCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGAt                    >  1:413253/1‑93 (MQ=255)

                                                                        tgctgcGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTa                 >  2:3864408/1‑93 (MQ=255)

                                                                         gctgcGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCCACAACGCGGGGCACAATCAAAATAGCCCGATGGATTTat                >  1:783835/1‑93 (MQ=255)

                                                                         gctgcGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTat                <  1:661930/93‑1 (MQ=255)

                                                                           tgcGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTatca              <  1:5246033/93‑1 (MQ=255)

                                                                              gTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCg           >  2:4586901/1‑93 (MQ=255)

                                                                               tAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCgg          >  2:6249427/1‑93 (MQ=255)

                                                                                aaaCTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCggg         >  2:3762959/1‑93 (MQ=255)

                                                                                aaaCTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCggg         >  2:2555732/1‑93 (MQ=255)

                                                                                 aaCTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGc        <  1:3121990/93‑1 (MQ=255)

                                                                                 aaCTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGc        >  1:6458282/1‑93 (MQ=255)

                                                                                 aaCTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGc        >  1:2000288/1‑93 (MQ=255)

                                                                                 aaCTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGc        >  2:2433457/1‑93 (MQ=255)

                                                                                  aCTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCt       >  1:6118998/1‑93 (MQ=255)

                                                                                   cTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTg      >  2:5731691/1‑93 (MQ=255)

                                                                                    tCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTga     >  2:5426375/1‑93 (MQ=255)

                                                                                    tCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTga     <  2:6574705/93‑1 (MQ=255)

                                                                                      aaTGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTgaga   <  1:6289351/93‑1 (MQ=255)

                                                                                       aTGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGAt  >  1:5658572/1‑93 (MQ=255)

                                                                                       aTGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGAt  <  2:5075974/93‑1 (MQ=255)

                                                                                       aTGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGAt  >  2:950818/1‑93 (MQ=255)

GGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGAT  >  NC_000913/2289022‑2289201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTAT  >  NC_000913/2289019‑2289205

AGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGC                                                                                                >  SRR4302536.493219/1‑94 (MQ=60)

AGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGC                                                                                                >  SRR4302536.4574425/1‑94 (MQ=60)

AGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGC                                                                                                >  SRR4302536.4514787/1‑94 (MQ=60)

AGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGC                                                                                                <  SRR4302536.6439379/94‑1 (MQ=60)

 GGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCC                                                                                               <  SRR4302536.6145356/94‑1 (MQ=60)

 GGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCC                                                                                               <  SRR4302536.1987605/94‑1 (MQ=60)

 GGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCC                                                                                               >  SRR4302536.6723893/1‑94 (MQ=60)

 GGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCC                                                                                               >  SRR4302536.6825978/1‑94 (MQ=60)

   GGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCG                                                                                             <  SRR4302536.5666330/94‑1 (MQ=60)

   GGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCG                                                                                             >  SRR4302536.1994974/1‑94 (MQ=60)

      TGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTC                                                                                          >  SRR4302536.6633593/1‑94 (MQ=60)

      TGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTC                                                                                          <  SRR4302536.1295270/94‑1 (MQ=60)

      TGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTC                                                                                          <  SRR4302536.1732454/94‑1 (MQ=60)

        TCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAC                                                                                        >  SRR4302536.5117855/1‑94 (MQ=60)

        TCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCAC                                                                                        <  SRR4302536.6392597/94‑1 (MQ=60)

         CAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACG                                                                                       >  SRR4302536.2874403/1‑94 (MQ=60)

          AAATAAACAGATTGCCTCTGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGC                                                                                      <  SRR4302536.5610258/94‑1 (MQ=60)

          AAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGC                                                                                      >  SRR4302536.1607478/1‑94 (MQ=60)

              AAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGG                                                                                  >  SRR4302536.1831833/1‑94 (MQ=60)

               AGCAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGC                                                                                 <  SRR4302536.4393933/94‑1 (MQ=60)

               AACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGC                                                                                 >  SRR4302536.5884463/1‑94 (MQ=60)

               AACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGC                                                                                 <  SRR4302536.3249960/94‑1 (MQ=60)

               AACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGC                                                                                 >  SRR4302536.1692391/1‑94 (MQ=60)

                 CAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGG                                                                               >  SRR4302536.2645070/1‑94 (MQ=60)

                   GATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCC                                                                             <  SRR4302536.4428402/94‑1 (MQ=60)

                    ATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCA                                                                            >  SRR4302536.2755173/1‑94 (MQ=60)

                       GCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCA                                                                         >  SRR4302536.608681/1‑94 (MQ=60)

                         CTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATT                                                                       >  SRR4302536.5143930/1‑94 (MQ=60)

                         CTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATT                                                                       >  SRR4302536.1821269/1‑94 (MQ=60)

                           CGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCT                                                                     <  SRR4302536.3231236/94‑1 (MQ=60)

                           CGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCT                                                                     <  SRR4302536.1131046/94‑1 (MQ=60)

                           CGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCT                                                                     <  SRR4302536.6117615/94‑1 (MQ=60)

                            GGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTG                                                                    <  SRR4302536.5670760/94‑1 (MQ=60)

                             GTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGT                                                                   <  SRR4302536.1948743/94‑1 (MQ=60)

                             GTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGT                                                                   >  SRR4302536.2471291/1‑94 (MQ=60)

                             GTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGT                                                                   <  SRR4302536.1877886/94‑1 (MQ=60)

                              TGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTT                                                                  <  SRR4302536.3696577/94‑1 (MQ=60)

                              TGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTT                                                                  >  SRR4302536.1203475/1‑94 (MQ=60)

                               GTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTC                                                                 >  SRR4302536.5184267/1‑94 (MQ=60)

                                TTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCC                                                                >  SRR4302536.2314391/1‑94 (MQ=60)

                                TTGAATATTTCCGAGCAGACAGTAAAAGTACATATTAGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCC                                                                >  SRR4302536.4821245/1‑94 (MQ=60)

                                TCGAATATTTCCGAGCAGACAGTAAGAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCC                                                                <  SRR4302536.5571775/94‑1 (MQ=60)

                                 TGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCT                                                               <  SRR4302536.1757360/94‑1 (MQ=60)

                                 TCAATATTTCCGAGCAGACAGTAAAATTACATATTGGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCT                                                               <  SRR4302536.2776376/94‑1 (MQ=60)

                                  GAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTG                                                              <  SRR4302536.4912610/94‑1 (MQ=60)

                                   AATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGC                                                             >  SRR4302536.6568173/1‑94 (MQ=60)

                                    ATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCA                                                            >  SRR4302536.3024030/1‑94 (MQ=60)

                                     TATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAA                                                           >  SRR4302536.176767/1‑94 (MQ=60)

                                      ATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAAC                                                          >  SRR4302536.6835606/1‑94 (MQ=60)

                                      ATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAAC                                                          >  SRR4302536.85359/1‑94 (MQ=60)

                                       TTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACA                                                         >  SRR4302536.930080/1‑94 (MQ=60)

                                         TCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCCACAA‑C                                                      >  SRR4302536.1384855/1‑94 (MQ=60)

                                         TCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑C                                                      <  SRR4302536.4575998/94‑1 (MQ=60)

                                         TCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑C                                                      <  SRR4302536.2942866/94‑1 (MQ=60)

                                          CCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CG                                                     <  SRR4302536.2576150/94‑1 (MQ=60)

                                          CCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CG                                                     >  SRR4302536.4145196/1‑94 (MQ=60)

                                          CCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CG                                                     <  SRR4302536.1725202/94‑1 (MQ=60)

                                           CGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGC                                                    <  SRR4302536.6754235/94‑1 (MQ=60)

                                            GAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCG                                                   <  SRR4302536.3362205/94‑1 (MQ=60)

                                             AGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGG                                                  <  SRR4302536.1351602/94‑1 (MQ=60)

                                             AGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGG                                                  >  SRR4302536.3687610/1‑94 (MQ=60)

                                              GCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGG                                                 <  SRR4302536.6147207/94‑1 (MQ=60)

                                              GCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGG                                                 <  SRR4302536.253687/94‑1 (MQ=60)

                                               CAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGG                                                >  SRR4302536.605203/1‑94 (MQ=60)

                                               CAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGG                                                >  SRR4302536.3284768/1‑94 (MQ=60)

                                               CAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGG                                                >  SRR4302536.196374/1‑94 (MQ=60)

                                                AGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGC                                               >  SRR4302536.3806366/1‑94 (MQ=60)

                                                AGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGC                                               >  SRR4302536.5129599/1‑94 (MQ=60)

                                                AGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGC                                               >  SRR4302536.1722371/1‑94 (MQ=60)

                                                AGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGC                                               <  SRR4302536.922445/94‑1 (MQ=60)

                                                 GACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCA                                              <  SRR4302536.3150493/94‑1 (MQ=60)

                                                  ACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCAC                                             >  SRR4302536.2993884/1‑94 (MQ=60)

                                                   CAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACA                                            >  SRR4302536.800377/1‑94 (MQ=60)

                                                   CAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACA                                            >  SRR4302536.2328924/1‑94 (MQ=60)

                                                    AGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAA                                           >  SRR4302536.403899/1‑94 (MQ=60)

                                                     GTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAAT                                          >  SRR4302536.884659/1‑94 (MQ=60)

                                                     GTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAAT                                          >  SRR4302536.5577488/1‑94 (MQ=60)

                                                     GTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAAT                                          >  SRR4302536.2850262/1‑94 (MQ=60)

                                                       AAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAA                                        >  SRR4302536.3809464/1‑94 (MQ=60)

                                                        AAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAA                                       >  SRR4302536.4737061/1‑94 (MQ=60)

                                                        AAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAA                                       >  SRR4302536.3078016/1‑94 (MQ=60)

                                                        AAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAA                                       <  SRR4302536.2092667/94‑1 (MQ=60)

                                                         AAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAA                                      <  SRR4302536.6707146/94‑1 (MQ=60)

                                                         AAGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGAGGCACAATAAAA                                      <  SRR4302536.3535531/94‑1 (MQ=60)

                                                          AGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAA                                     >  SRR4302536.2122899/1‑94 (MQ=60)

                                                          AGTACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAA                                     >  SRR4302536.6159888/1‑94 (MQ=60)

                                                             ACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAG                                  <  SRR4302536.5479540/94‑1 (MQ=60)

                                                             ACATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAG                                  <  SRR4302536.5642667/94‑1 (MQ=60)

                                                              CATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGC                                 >  SRR4302536.4192926/1‑94 (MQ=60)

                                                              CATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGC                                 >  SRR4302536.812696/1‑94 (MQ=60)

                                                              CATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGC                                 >  SRR4302536.5835899/1‑94 (MQ=60)

                                                               ATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCC                                >  SRR4302536.3349462/1‑94 (MQ=60)

                                                               ATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCC                                >  SRR4302536.6497242/1‑94 (MQ=60)

                                                               ATATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCC                                >  SRR4302536.1906891/1‑94 (MQ=60)

                                                               ATACTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCC                                >  SRR4302536.1580303/1‑94 (MQ=60)

                                                                 ATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCG                              >  SRR4302536.1152783/1‑94 (MQ=60)

                                                                 ATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCG                              <  SRR4302536.5961491/94‑1 (MQ=60)

                                                                 ATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCG                              <  SRR4302536.3816643/94‑1 (MQ=60)

                                                                 ATTCGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCG                              <  SRR4302536.2097516/94‑1 (MQ=60)

                                                                    CGCAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATC                           <  SRR4302536.3541735/94‑1 (MQ=60)

                                                                     GCAATCTGCTGCGTAAACTCAATGCACCCCAACGCGTGACGGCCGCCATTCTGTTCCTGCAACAA‑CGCGGCCCACAATAAAAATAGCCCGATGG                          <  SRR4302536.1220982/94‑1 (MQ=53)

                                                                      CAATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGA                         >  SRR4302536.3914215/1‑94 (MQ=60)

                                                                       AATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGAT                        >  SRR4302536.6060025/1‑94 (MQ=60)

                                                                       AATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGAT                        >  SRR4302536.424154/1‑94 (MQ=60)

                                                                       AATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGAT                        >  SRR4302536.79536/1‑94 (MQ=60)

                                                                       AATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGAT                        >  SRR4302536.2197773/1‑94 (MQ=60)

                                                                        ATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATT                       >  SRR4302536.6771957/1‑94 (MQ=60)

                                                                        ATCTGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATT                       >  SRR4302536.687241/1‑94 (MQ=60)

                                                                         ACTGCTGCGTAAACTCAATGCCCGCTCCCGCGTGGCCGCCCCCATTCTGTTCCTTCAACAACCGGGGGGCACAATAAAAATAGCCCGATGGATT                       <  SRR4302536.2686155/94‑1 (MQ=60)

                                                                           TGCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCCACAA‑CGCGGGGCACAATCAAAATAGCCCGATGGATTTAT                    >  SRR4302536.806790/1‑94 (MQ=60)

                                                                            GCTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATC                   <  SRR4302536.681338/94‑1 (MQ=60)

                                                                             CTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCA                  >  SRR4302536.5819384/1‑94 (MQ=60)

                                                                             CTGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCA                  <  SRR4302536.6390503/94‑1 (MQ=60)

                                                                              TGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCAT                 <  SRR4302536.5402367/94‑1 (MQ=60)

                                                                              TGCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCAT                 >  SRR4302536.184510/1‑94 (MQ=60)

                                                                               GCGTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATC                <  SRR4302536.1776387/94‑1 (MQ=60)

                                                                                 GTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGG              >  SRR4302536.1737100/1‑94 (MQ=60)

                                                                                 GTAAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGG              <  SRR4302536.1339515/94‑1 (MQ=60)

                                                                                   AAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGC            >  SRR4302536.6651104/1‑94 (MQ=60)

                                                                                   AAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGC            >  SRR4302536.6651105/1‑94 (MQ=60)

                                                                                   AAACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGC            >  SRR4302536.2060490/1‑94 (MQ=60)

                                                                                    accgCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCT           <  SRR4302536.4986223/90‑1 (MQ=60)

                                                                                    AACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCT           <  SRR4302536.3213202/94‑1 (MQ=60)

                                                                                    AACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCT           >  SRR4302536.146752/1‑94 (MQ=60)

                                                                                    AACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCT           >  SRR4302536.6301376/1‑94 (MQ=60)

                                                                                     ACTCAATGCCCGCTGACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTG          >  SRR4302536.6630816/1‑94 (MQ=60)

                                                                                     ACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTG          <  SRR4302536.5330149/94‑1 (MQ=60)

                                                                                     ACTCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTG          >  SRR4302536.1999717/1‑94 (MQ=60)

                                                                                       TCAATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAG        <  SRR4302536.6557529/94‑1 (MQ=60)

                                                                                         AATGCGCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGAT      <  SRR4302536.4135246/94‑1 (MQ=60)

                                                                                         AATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGAT      >  SRR4302536.5826751/1‑94 (MQ=60)

                                                                                         AATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGAT      <  SRR4302536.6476768/94‑1 (MQ=60)

                                                                                          ATGCCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATT     <  SRR4302536.3177300/94‑1 (MQ=60)

                                                                                             CCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACCATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTAT  >  SRR4302536.274470/1‑94 (MQ=60)

                                                                                             CCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTAT  >  SRR4302536.4386747/1‑94 (MQ=60)

                                                                                             CCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTAT  <  SRR4302536.1016767/94‑1 (MQ=60)

AGGGGCTGTCAAATAAACAGATTGCCTCGGTGTTGAATATTTCCGAGCAGACAGTAAAAGTACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAA‑CGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTAT  >  NC_000913/2289019‑2289205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`