Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1475 266.7 13469680 98.2% 13227225 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,448,480 G→A A44V (GCG→GTG)  b2333 ← putative fimbrial‑like protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,448,4800GA100.0% 811.2 / NA 217A44V (GCG→GTG) b2333putative fimbrial‑like protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (105/112);  total (105/112)

Only 100 of 227 total aligned reads displayed.

ACACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCGCACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCGCT  >  NC_000913/2448390‑2448569
                                                                                          |                                                                                         
acacGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGcaca                                                                                         <  2:2597822/93‑1 (MQ=255)
acacGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGAACCTCTGCCAGATATTGGCCATCCACCACCAGcaca                                                                                         >  1:5148370/1‑93 (MQ=255)
  acGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGcacaca                                                                                       <  2:177638/93‑1 (MQ=255)
  acGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGcacaca                                                                                       <  1:4168577/93‑1 (MQ=255)
   cGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAg                                                                                      <  1:5999024/93‑1 (MQ=255)
    gAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAgg                                                                                     <  2:2127230/93‑1 (MQ=255)
    gAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAgg                                                                                     <  1:4906315/93‑1 (MQ=255)
    gAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAgg                                                                                     >  2:5944759/1‑93 (MQ=255)
     aGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAggt                                                                                    >  2:5140439/1‑92 (MQ=255)
     aGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGa                                                                                    <  2:904672/93‑1 (MQ=255)
     aGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGa                                                                                    <  2:1468634/93‑1 (MQ=255)
     aGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGa                                                                                    <  1:3346977/93‑1 (MQ=255)
     aGCGGACTGGCCTGCAACGTTCAAATCATGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGa                                                                                    <  1:1019290/93‑1 (MQ=255)
      gCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGAt                                                                                   >  2:4673560/1‑93 (MQ=255)
      gCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGAt                                                                                   <  1:185746/93‑1 (MQ=255)
      gCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGAt                                                                                   <  1:3727911/93‑1 (MQ=255)
       cGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGAtt                                                                                  >  2:526847/1‑93 (MQ=255)
         gACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCCGATATTGGCCATCCACCACCAGCACACAGGATTTa                                                                                >  2:309093/1‑93 (MQ=255)
         gACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTa                                                                                <  1:2387428/93‑1 (MQ=255)
          aCTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTAc                                                                               <  2:6192757/93‑1 (MQ=255)
            tGGCCTGCTACGTTCAAATACTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACtt                                                                             >  1:6513198/1‑93 (MQ=255)
            tGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACtt                                                                             <  2:2150512/93‑1 (MQ=255)
            tGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACtt                                                                             <  2:2077674/93‑1 (MQ=255)
               ccTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTtaat                                                                          <  2:1986267/93‑1 (MQ=255)
                cTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTtaata                                                                         <  1:3823600/93‑1 (MQ=255)
                cTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTtaata                                                                         <  1:2063270/93‑1 (MQ=255)
                cTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTtaata                                                                         <  2:6278491/93‑1 (MQ=255)
                cTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTtaata                                                                         >  1:6619637/1‑93 (MQ=255)
                 tGCAACGTTCAAATCGTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTtaataa                                                                        <  1:2851207/93‑1 (MQ=255)
                 tGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTtaataa                                                                        >  1:3708148/1‑93 (MQ=255)
                 tGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTtaataa                                                                        >  2:4325040/1‑93 (MQ=255)
                 tGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTtaataa                                                                        >  1:458387/1‑93 (MQ=255)
                  gCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATaaa                                                                       >  2:3747523/1‑93 (MQ=255)
                  gCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATaaa                                                                       <  2:3036644/93‑1 (MQ=255)
                   cAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAAt                                                                      <  1:2677912/93‑1 (MQ=255)
                    aaCGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAAtt                                                                     >  1:5339224/1‑93 (MQ=255)
                    aaCGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAAtt                                                                     >  2:4483882/1‑93 (MQ=255)
                    aaCGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTCCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAAtt                                                                     >  2:4152814/1‑93 (MQ=255)
                     aCGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTa                                                                    >  1:5671219/1‑93 (MQ=255)
                     aCGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTa                                                                    >  1:967824/1‑93 (MQ=255)
                     aCGTTAAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTa                                                                    <  1:4354521/93‑1 (MQ=255)
                        ttCAAATCCTGGCGACTGACCGTGGGAAAGCGCCCCTCTGCCAGATATTGGCGATCCACCACCAGCACACAGGATTTACTTAATAAATTACCg                                                                 <  1:6282456/93‑1 (MQ=255)
                            aaTCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGgaga                                                             <  2:831932/93‑1 (MQ=255)
                                 tGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGc                                                        >  2:484147/1‑93 (MQ=255)
                                 tGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGc                                                        >  1:2976445/1‑93 (MQ=255)
                                 tGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGc                                                        <  1:3540203/93‑1 (MQ=255)
                                 tGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGc                                                        <  1:1307659/93‑1 (MQ=255)
                                  gacgacTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATACATTACCGGAGAAATGCa                                                       >  1:5554153/1‑93 (MQ=255)
                                  gacgacTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCa                                                       <  1:5386502/93‑1 (MQ=255)
                                  gacgacTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCa                                                       <  1:1947920/93‑1 (MQ=255)
                                    cgacTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGa                                                     <  1:2691337/93‑1 (MQ=255)
                                    cgacTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGa                                                     <  1:1800534/93‑1 (MQ=255)
                                      acTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGatt                                                   <  1:4537188/93‑1 (MQ=255)
                                      acTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGatt                                                   <  1:6345695/93‑1 (MQ=255)
                                      acTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGatt                                                   <  1:6203351/93‑1 (MQ=255)
                                       cTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGatta                                                  >  2:1684503/1‑93 (MQ=255)
                                       cTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGatta                                                  >  2:3321564/1‑93 (MQ=255)
                                        tGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGattat                                                 <  1:393963/93‑1 (MQ=255)
                                         gACCGTGGGAAAGCGCACCTCTGCCAGATATTGGACATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGattatt                                                <  2:1858921/93‑1 (MQ=255)
                                          aCCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGAttatta                                               >  1:2300407/1‑93 (MQ=255)
                                                ggAAAGCGCACCTCTGCCAGATGTTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGcc                                         <  2:5375265/93‑1 (MQ=255)
                                                 gAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCcg                                        >  1:4967110/1‑93 (MQ=255)
                                                       gcACGTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATa                                  <  1:4274842/93‑1 (MQ=255)
                                                       gcACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATa                                  >  2:387360/1‑93 (MQ=255)
                                                         aCCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAAc                                >  1:5825121/1‑93 (MQ=255)
                                                           ctctGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGt                              <  2:2716574/93‑1 (MQ=255)
                                                            tctGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTg                             >  2:1264323/1‑93 (MQ=255)
                                                            tctGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTg                             <  1:1865129/93‑1 (MQ=255)
                                                            tctGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTg                             >  1:1640080/1‑93 (MQ=255)
                                                              tGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCt                           >  2:2836519/1‑93 (MQ=255)
                                                              tGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCt                           >  2:2638655/1‑93 (MQ=255)
                                                               gCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTa                          >  2:2956770/1‑93 (MQ=255)
                                                               gCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTa                          >  1:5472838/1‑93 (MQ=255)
                                                                    atatTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCAt                     >  2:5921951/1‑93 (MQ=255)
                                                                    atatTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCAt                     <  2:4826540/93‑1 (MQ=255)
                                                                     tatTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCAtt                    <  2:3974361/93‑1 (MQ=255)
                                                                     tatTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCAtt                    <  1:4098828/93‑1 (MQ=255)
                                                                     tatTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCAtt                    >  2:6437981/1‑93 (MQ=255)
                                                                      atTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTg                   >  2:5420649/1‑93 (MQ=255)
                                                                       ttGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGc                  >  2:33864/1‑93 (MQ=255)
                                                                       ttGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGc                  >  1:5268846/1‑93 (MQ=255)
                                                                        tGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGcc                 <  2:5836023/93‑1 (MQ=255)
                                                                         ggCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCa                >  1:825462/1‑93 (MQ=255)
                                                                         ggCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCa                >  1:2517445/1‑93 (MQ=255)
                                                                          gCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCaa               <  2:4771963/93‑1 (MQ=255)
                                                                          gCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCaa               >  2:6628005/1‑93 (MQ=255)
                                                                          gCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCaa               >  2:6006334/1‑93 (MQ=255)
                                                                            cATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAata             <  2:76731/93‑1 (MQ=255)
                                                                            cATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAata             >  2:2760792/1‑93 (MQ=255)
                                                                            cATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAata             <  2:4942053/93‑1 (MQ=255)
                                                                            cATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAata             <  2:1885183/93‑1 (MQ=255)
                                                                              tCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATc           >  2:5510293/1‑93 (MQ=255)
                                                                              tCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATc           >  2:4049403/1‑93 (MQ=255)
                                                                               ccaccaccaGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCa          <  2:5011538/93‑1 (MQ=255)
                                                                                caccaccaGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAg         >  1:1191331/1‑93 (MQ=255)
                                                                                 accaccaGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGc        >  1:789975/1‑93 (MQ=255)
                                                                                   caccaGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGccc      >  1:6149288/1‑93 (MQ=255)
                                                                                    accaGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGcccc     <  1:4339647/93‑1 (MQ=255)
                                                                                    accaGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGcccc     <  1:1353601/93‑1 (MQ=255)
                                                                                     ccaGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCg    >  2:2374450/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCGCACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCGCT  >  NC_000913/2448390‑2448569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTACACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCGCACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCGCTAAC  >  NC_000913/2448388‑2448572
                                                                                            |                                                                                            
GTACACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCAC                                                                                             <  SRR4302536.3558694/94‑1 (MQ=60)
 TACACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACA                                                                                            >  SRR4302536.4480456/1‑94 (MQ=60)
 TACACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGAACCTCTGCCAGATATTGGCCATCCACCACCAGCACA                                                                                            >  SRR4302536.5301999/1‑94 (MQ=60)
  ACACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACAC                                                                                           >  SRR4302536.2826512/1‑94 (MQ=60)
    ACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAG                                                                                         <  SRR4302536.4292428/94‑1 (MQ=60)
    ACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAG                                                                                         <  SRR4302536.1618034/94‑1 (MQ=60)
     CGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGG                                                                                        <  SRR4302536.4449573/94‑1 (MQ=60)
     CGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGG                                                                                        <  SRR4302536.6177855/94‑1 (MQ=60)
      GAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGA                                                                                       <  SRR4302536.5053816/94‑1 (MQ=60)
       AGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGAT                                                                                      <  SRR4302536.3446170/94‑1 (MQ=60)
       AGCGGACTGGCCTGCAACGTTCAAATCATGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGAT                                                                                      <  SRR4302536.1049458/94‑1 (MQ=60)
        GCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATT                                                                                     <  SRR4302536.190644/94‑1 (MQ=60)
        GCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATT                                                                                     <  SRR4302536.3839336/94‑1 (MQ=60)
        GCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATT                                                                                     <  SRR4302536.2843081/94‑1 (MQ=60)
         TGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTT                                                                                    >  SRR4302536.896768/1‑94 (MQ=60)
         CGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTT                                                                                    <  SRR4302536.5793980/94‑1 (MQ=60)
         CGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTT                                                                                    <  SRR4302536.1918203/94‑1 (MQ=60)
           GACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTAC                                                                                  <  SRR4302536.5511799/94‑1 (MQ=60)
           GACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTAC                                                                                  >  SRR4302536.2498005/1‑94 (MQ=60)
           GACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTAC                                                                                  <  SRR4302536.2459721/94‑1 (MQ=60)
            ACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACT                                                                                 <  SRR4302536.4308079/94‑1 (MQ=60)
            ACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACT                                                                                 <  SRR4302536.6095184/94‑1 (MQ=60)
             CTGGCCTGCTACGTTCAAATACTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTT                                                                                >  SRR4302536.6707276/1‑94 (MQ=60)
              TGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTA                                                                               <  SRR4302536.6640653/94‑1 (MQ=60)
                GCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAAT                                                                             <  SRR4302536.1599973/94‑1 (MQ=60)
                 CCTGCAACGTTCAAGTCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATA                                                                            <  SRR4302536.3867645/94‑1 (MQ=60)
                 CCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATA                                                                            >  SRR4302536.6816443/1‑94 (MQ=60)
                  CTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAA                                                                           <  SRR4302536.4055847/94‑1 (MQ=60)
                  CTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAA                                                                           <  SRR4302536.3937521/94‑1 (MQ=60)
                  CTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAA                                                                           >  SRR4302536.3819009/1‑94 (MQ=60)
                  CTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAA                                                                           >  SRR4302536.470384/1‑94 (MQ=60)
                  CTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAA                                                                           <  SRR4302536.2125407/94‑1 (MQ=60)
                   TGCAACGTTCAAATCGTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAA                                                                          <  SRR4302536.2935498/94‑1 (MQ=60)
                   TGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGTACACAGGATTTACTTAATAAA                                                                          <  SRR4302536.6646022/94‑1 (MQ=60)
                   TGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAA                                                                          >  SRR4302536.2601771/1‑94 (MQ=60)
                    GCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAAT                                                                         <  SRR4302536.4165824/94‑1 (MQ=60)
                    GCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAAT                                                                         >  SRR4302536.519431/1‑94 (MQ=60)
                     CAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATT                                                                        <  SRR4302536.2757943/94‑1 (MQ=60)
                     CAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATT                                                                        >  SRR4302536.5498713/1‑94 (MQ=60)
                     CAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATT                                                                        >  SRR4302536.5758022/1‑94 (MQ=60)
                      AACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTA                                                                       <  SRR4302536.4192608/94‑1 (MQ=60)
                      AACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTA                                                                       >  SRR4302536.556338/1‑94 (MQ=60)
                      AACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTA                                                                       >  SRR4302536.996400/1‑94 (MQ=60)
                      AACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTA                                                                       >  SRR4302536.5839794/1‑94 (MQ=60)
                       ACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTAC                                                                      <  SRR4302536.4640825/94‑1 (MQ=60)
                       ACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTAC                                                                      <  SRR4302536.6257831/94‑1 (MQ=60)
                       ACGTTAAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTAC                                                                      <  SRR4302536.4484775/94‑1 (MQ=60)
                         GTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCG                                                                    <  SRR4302536.313381/94‑1 (MQ=60)
                          TTCAAATCCTGGCGACTGACCGTGGGAAAGCGCCCCTCTGCCAGATATTGGCGATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGG                                                                   <  SRR4302536.6469679/94‑1 (MQ=60)
                          TTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGG                                                                   <  SRR4302536.3784408/94‑1 (MQ=60)
                           TCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGA                                                                  >  SRR4302536.6422707/1‑94 (MQ=60)
                             AAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGA                                                                >  SRR4302536.1955454/1‑94 (MQ=60)
                             AAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGA                                                                >  SRR4302536.1955453/1‑94 (MQ=60)
                             AAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGA                                                                >  SRR4302536.499288/1‑94 (MQ=60)
                               ATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAA                                                              >  SRR4302536.5367890/1‑94 (MQ=60)
                               ATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAA                                                              <  SRR4302536.6259377/94‑1 (MQ=60)
                                  CTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGC                                                           <  SRR4302536.4720276/94‑1 (MQ=60)
                                  CTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGC                                                           >  SRR4302536.3064061/1‑94 (MQ=60)
                                   TGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATACATTACCGGAGAAATGCA                                                          >  SRR4302536.5719591/1‑94 (MQ=60)
                                   TGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCA                                                          <  SRR4302536.3646056/94‑1 (MQ=60)
                                   TGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCA                                                          <  SRR4302536.1346699/94‑1 (MQ=60)
                                    GACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAG                                                         <  SRR4302536.2006498/94‑1 (MQ=60)
                                    GACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAG                                                         <  SRR4302536.587554/94‑1 (MQ=60)
                                    GACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAG                                                         <  SRR4302536.5547270/94‑1 (MQ=60)
                                    GACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAG                                                         <  SRR4302536.4993170/94‑1 (MQ=60)
                                      CGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGAT                                                       >  SRR4302536.6519290/1‑94 (MQ=60)
                                      CGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGAT                                                       <  SRR4302536.1854884/94‑1 (MQ=60)
                                      CGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGAT                                                       <  SRR4302536.2771682/94‑1 (MQ=60)
                                        ACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTA                                                     <  SRR4302536.6388128/94‑1 (MQ=60)
                                        ACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTA                                                     <  SRR4302536.4673232/94‑1 (MQ=60)
                                        ACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTA                                                     <  SRR4302536.6534741/94‑1 (MQ=60)
                                          TGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATT                                                   <  SRR4302536.404367/94‑1 (MQ=60)
                                          TGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATT                                                   >  SRR4302536.6368092/1‑94 (MQ=60)
                                           GACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTA                                                  >  SRR4302536.2370205/1‑94 (MQ=60)
                                               GTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTG                                              <  SRR4302536.6783939/94‑1 (MQ=60)
                                               GTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTG                                              >  SRR4302536.1796016/1‑94 (MQ=60)
                                                 GGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCC                                            <  SRR4302536.704178/94‑1 (MQ=60)
                                                  GGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCG                                           <  SRR4302536.1105359/94‑1 (MQ=60)
                                                  GGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCG                                           <  SRR4302536.3836566/94‑1 (MQ=60)
                                                  GGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCG                                           >  SRR4302536.5116318/1‑94 (MQ=60)
                                                    AAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCG                                         <  SRR4302536.35444/94‑1 (MQ=60)
                                                     AAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGA                                        >  SRR4302536.944681/1‑94 (MQ=60)
                                                      AGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAA                                       >  SRR4302536.1349135/1‑94 (MQ=60)
                                                       GCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAAT                                      <  SRR4302536.1857178/94‑1 (MQ=60)
                                                         GCACGTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAA                                    <  SRR4302536.4402274/94‑1 (MQ=60)
                                                          CACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAAC                                   >  SRR4302536.5998675/1‑94 (MQ=60)
                                                           ACCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACG                                  >  SRR4302536.5067135/1‑94 (MQ=60)
                                                            CCTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGT                                 >  SRR4302536.4409610/1‑94 (MQ=60)
                                                             CTCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTG                                >  SRR4302536.1687827/1‑94 (MQ=60)
                                                              TCTGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGC                               <  SRR4302536.1921283/94‑1 (MQ=60)
                                                                TGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTA                             >  SRR4302536.5636332/1‑94 (MQ=60)
                                                                TGCCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTA                             <  SRR4302536.5679941/94‑1 (MQ=60)
                                                                  CCAGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACT                           >  SRR4302536.2943969/1‑94 (MQ=60)
                                                                    AGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCA                         >  SRR4302536.5483887/1‑94 (MQ=60)
                                                                    AGATATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCA                         <  SRR4302536.2762532/94‑1 (MQ=60)
                                                                       TATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTG                      <  SRR4302536.4220372/94‑1 (MQ=60)
                                                                        ATTGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGC                     >  SRR4302536.5425875/1‑94 (MQ=60)
                                                                          TGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCA                   >  SRR4302536.849766/1‑94 (MQ=60)
                                                                          TGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCA                   >  SRR4302536.2593346/1‑94 (MQ=60)
                                                                          TGGCCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCA                   >  SRR4302536.2118253/1‑94 (MQ=60)
                                                                             CCATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATA                >  SRR4302536.2248035/1‑94 (MQ=60)
                                                                               ATCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATC              >  SRR4302536.4245887/1‑94 (MQ=60)
                                                                                TCCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCA             <  SRR4302536.3715425/94‑1 (MQ=60)
                                                                                 CCACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAG            >  SRR4302536.1227158/1‑94 (MQ=60)
                                                                                  CACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGC           >  SRR4302536.2426527/1‑94 (MQ=60)
                                                                                  CACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGC           >  SRR4302536.813106/1‑94 (MQ=60)
                                                                                   ACCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCC          >  SRR4302536.827383/1‑94 (MQ=60)
                                                                                    CCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCT         <  SRR4302536.5450772/94‑1 (MQ=60)
                                                                                    CCACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCC         >  SRR4302536.6332501/1‑94 (MQ=60)
                                                                                      ACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCG       <  SRR4302536.1393952/94‑1 (MQ=60)
                                                                                      ACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCG       >  SRR4302536.2536317/1‑94 (MQ=60)
                                                                                      ACCAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCG       <  SRR4302536.4469613/94‑1 (MQ=60)
                                                                                        CAGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCGCT     <  SRR4302536.1240426/94‑1 (MQ=60)
                                                                                         AGCACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCGCTA    >  SRR4302536.2865934/1‑94 (MQ=60)
                                                                                           CACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCGCTAAC  >  SRR4302536.503933/1‑94 (MQ=60)
                                                                                           CACACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCGCTAAC  <  SRR4302536.2134978/94‑1 (MQ=60)
                                                                                            |                                                                                            
GTACACGAGCGGACTGGCCTGCAACGTTCAAATCCTGACGACTGACCGTGGGAAAGCGCACCTCTGCCAGATATTGGCCATCCACCACCAGCGCACAGGATTTACTTAATAAATTACCGGAGAAATGCAGATTATTATCTGCCGCGAATAACGTGCTACTCATTGCCAATATCAGCCCCGCTAAC  >  NC_000913/2448388‑2448572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑