Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,459,210	A→G	intergenic (‑232/‑110)	b2343 ← / → fadL	hypothetical protein/FadL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,459,210	0	A	G	100.0%	818.0 / NA	249	intergenic (‑232/‑110)	b2343/fadL	hypothetical protein/FadL
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (141/108); total (141/108)

Only 100 of 254 total aligned reads displayed.

GCCACCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGACCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTA  >  NC_000913/2459120‑2459298

  cACCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCta                                                                                      >  2:4723504/1‑93 (MQ=255)

   aCCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCtat                                                                                     >  2:3006552/1‑93 (MQ=255)

    ccTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATCCTTGCAACATTCCAGCTGGTCCGGCCtata                                                                                    <  2:1683075/93‑1 (MQ=255)

    ccTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCtata                                                                                    <  1:5541138/93‑1 (MQ=255)

    ccTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCtata                                                                                    <  2:5539671/93‑1 (MQ=255)

    ccTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCtata                                                                                    <  2:4832443/93‑1 (MQ=255)

     cTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATAc                                                                                   <  1:1333104/93‑1 (MQ=255)

     cTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATAc                                                                                   >  2:6687413/1‑93 (MQ=255)

      tCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATAct                                                                                  >  2:1195534/1‑93 (MQ=255)

        cAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATActct                                                                                >  2:541026/1‑93 (MQ=255)

        cAAATTTTCCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATActct                                                                                <  1:593880/93‑1 (MQ=255)

            ttttGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGcc                                                                            <  1:1567721/93‑1 (MQ=255)

            ttttGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGcc                                                                            >  1:5879298/1‑93 (MQ=255)

            ttttGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGcc                                                                            <  1:3494437/93‑1 (MQ=255)

              ttGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCAc                                                                          <  1:3185424/93‑1 (MQ=255)

               tGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACt                                                                         <  2:1325549/93‑1 (MQ=255)

                gCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTg                                                                        >  2:6286877/1‑93 (MQ=255)

                gCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTg                                                                        >  2:3914252/1‑93 (MQ=255)

                  cAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGt                                                                      <  1:6429292/93‑1 (MQ=255)

                  cAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGt                                                                      >  1:4759090/1‑93 (MQ=255)

                   aGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTc                                                                     <  2:3430048/93‑1 (MQ=255)

                   aGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTc                                                                     >  1:3570885/1‑93 (MQ=255)

                   aGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCCCCACTgggc                                                                     >  2:1615780/1‑91 (MQ=255)

                      tGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGa                                                                  >  1:4268001/1‑93 (MQ=255)

                      tGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGa                                                                  <  2:1741105/93‑1 (MQ=255)

                       ggATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGAt                                                                 <  1:751754/93‑1 (MQ=255)

                       ggATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGAt                                                                 <  2:319869/93‑1 (MQ=255)

                        gATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGAtt                                                                <  1:978436/93‑1 (MQ=255)

                         aTCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGAttt                                                               >  1:3312054/1‑93 (MQ=255)

                         aTCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGAttt                                                               >  1:6698150/1‑93 (MQ=255)

                         aTCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGAttt                                                               >  2:4203457/1‑93 (MQ=255)

                          tCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTc                                                              >  2:5136445/1‑93 (MQ=255)

                           cgcgTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCt                                                             >  2:1886474/1‑93 (MQ=255)

                            gcgTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTa                                                            >  1:6020072/1‑93 (MQ=255)

                             cgTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTaa                                                           <  1:3034170/93‑1 (MQ=255)

                             cgTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTaa                                                           >  1:1661312/1‑93 (MQ=255)

                                ttCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGAt                                                        <  2:2108177/93‑1 (MQ=255)

                                    tAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTAc                                                    >  1:4918972/1‑93 (MQ=255)

                                    tAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTAc                                                    >  1:2676129/1‑93 (MQ=255)

                                       aTCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTc                                                 >  1:4639211/1‑93 (MQ=255)

                                           tatTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAc                                             >  2:4685641/1‑93 (MQ=255)

                                            atTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAcc                                            >  1:1011135/1‑93 (MQ=255)

                                            atTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAACATGCACCTCAGagc                                            >  1:2237522/1‑91 (MQ=255)

                                             tttGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAccc                                           >  2:5598223/1‑93 (MQ=255)

                                             tttGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAccc                                           >  1:6257191/1‑93 (MQ=255)

                                             tttGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAccc                                           <  2:1758289/93‑1 (MQ=255)

                                             tttGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAccc                                           <  2:4169382/93‑1 (MQ=255)

                                             tttGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAccc                                           <  1:5865577/93‑1 (MQ=255)

                                                  aaaaaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTacac                                      >  2:442140/1‑93 (MQ=255)

                                                  aaaaaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGACACTGGTCTGATTTCTAAGATGTACCTCAGACCCTacac                                      >  2:3096936/1‑93 (MQ=255)

                                                   aaaaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACt                                     >  2:268877/1‑93 (MQ=255)

                                                   aaaaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACt                                     <  2:2270736/93‑1 (MQ=255)

                                                    aaaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACtt                                    >  2:3600424/1‑93 (MQ=255)

                                                    aaaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACtt                                    <  1:3212297/93‑1 (MQ=255)

                                                    aaaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACtt                                    <  1:5091576/93‑1 (MQ=255)

                                                    aaaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACtt                                    >  2:1391953/1‑93 (MQ=255)

                                                     aaGATAGAACCATACTTGCAACATCACAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAACCTACACTTc                                   <  1:6682534/93‑1 (MQ=255)

                                                     aaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTc                                   <  2:5664629/93‑1 (MQ=255)

                                                     aaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTc                                   <  1:2483201/93‑1 (MQ=255)

                                                     aaGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTc                                   >  2:17163/1‑93 (MQ=255)

                                                      aGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTcg                                  >  2:6480944/1‑93 (MQ=255)

                                                       gATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTcgc                                 >  2:655645/1‑93 (MQ=255)

                                                       gATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTcgc                                 >  2:1083586/1‑93 (MQ=255)

                                                       gATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTcgc                                 >  1:3847515/1‑93 (MQ=255)

                                                        aTAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTcgcg                                <  1:6391600/93‑1 (MQ=255)

                                                           gAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTc                             >  1:2015931/1‑93 (MQ=255)

                                                           gAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTc                             >  1:1274336/1‑93 (MQ=255)

                                                            aaaCATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTcc                            <  1:4500619/93‑1 (MQ=255)

                                                            aaaCATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTcc                            <  2:4793786/93‑1 (MQ=255)

                                                            aaaCATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTcc                            >  2:3483040/1‑93 (MQ=255)

                                                              aCATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTg                          >  2:3867137/1‑93 (MQ=255)

                                                               cATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGt                         >  1:643512/1‑93 (MQ=255)

                                                                aTACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGtt                        <  1:2880081/93‑1 (MQ=255)

                                                                aTACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGtt                        >  1:5829079/1‑93 (MQ=255)

                                                                aTACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGtt                        >  1:2287277/1‑93 (MQ=255)

                                                                 tACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTa                       <  1:5041620/93‑1 (MQ=255)

                                                                   cTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACa                     <  2:1023555/93‑1 (MQ=255)

                                                                    ttGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAg                    >  1:2516888/1‑93 (MQ=255)

                                                                       cAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCAc                 <  1:4389009/93‑1 (MQ=255)

                                                                        aaCATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACg                >  2:4967969/1‑93 (MQ=255)

                                                                        aaCATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACg                <  1:5770355/93‑1 (MQ=255)

                                                                        aaCATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACg                >  2:6079144/1‑93 (MQ=255)

                                                                        aaCATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACg                <  1:326933/93‑1 (MQ=255)

                                                                         aCATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACCGCACGt               >  1:1151833/1‑93 (MQ=255)

                                                                         aCATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGt               >  2:4508943/1‑93 (MQ=255)

                                                                         aCATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGt               <  2:372995/93‑1 (MQ=255)

                                                                         aCATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGt               >  2:6542908/1‑93 (MQ=255)

                                                                          cATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTa              >  2:69478/1‑93 (MQ=255)

                                                                           aTTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTaa             <  2:2726724/93‑1 (MQ=255)

                                                                            ttCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAAc            <  1:6327566/93‑1 (MQ=255)

                                                                             tCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACa           <  1:5113703/93‑1 (MQ=255)

                                                                              ccAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACAt          <  1:5286301/93‑1 (MQ=255)

                                                                               cAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATa         <  2:3518263/93‑1 (MQ=255)

                                                                                 gCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGt       >  1:487313/1‑93 (MQ=255)

                                                                                 gCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGt       <  1:1966530/93‑1 (MQ=255)

                                                                                  cTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGtt      >  2:1981494/1‑93 (MQ=255)

                                                                                   tGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGttt     <  2:2974400/93‑1 (MQ=255)

                                                                                   tGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGttt     <  1:5131442/93‑1 (MQ=255)

                                                                                    ggTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTg    >  1:3711746/1‑93 (MQ=255)

                                                                                     gTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGt   <  2:5235723/93‑1 (MQ=255)

GCCACCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGACCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTA  >  NC_000913/2459120‑2459298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCACCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGACCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTATAAAA  >  NC_000913/2459120‑2459303

GCCACCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCT                                                                                            >  SRR4302536.5708678/1‑94 (MQ=60)

  CACCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTAT                                                                                          >  SRR4302536.602233/1‑94 (MQ=60)

   ACCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATA                                                                                         >  SRR4302536.2388191/1‑94 (MQ=60)

    CCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATAC                                                                                        <  SRR4302536.5706265/94‑1 (MQ=60)

    CCTCCAAATTTTGCCAGCTGGATCGCGATTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATAC                                                                                        >  SRR4302536.2772750/1‑94 (MQ=60)

     CTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACT                                                                                       <  SRR4302536.1048496/94‑1 (MQ=60)

     CTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACT                                                                                       <  SRR4302536.1372899/94‑1 (MQ=60)

      TCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTC                                                                                      <  SRR4302536.2586926/94‑1 (MQ=60)

       CCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCT                                                                                     >  SRR4302536.3447410/1‑94 (MQ=60)

        CAAATTTTCCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTC                                                                                    <  SRR4302536.610033/94‑1 (MQ=60)

         AAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCG                                                                                   >  SRR4302536.6155265/1‑94 (MQ=60)

           ATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCC                                                                                 >  SRR4302536.6054433/1‑94 (MQ=60)

            TTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCA                                                                                <  SRR4302536.1613711/94‑1 (MQ=60)

            TTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCA                                                                                <  SRR4302536.3598695/94‑1 (MQ=60)

              TTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACT                                                                              <  SRR4302536.3278816/94‑1 (MQ=60)

              TTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACT                                                                              <  SRR4302536.380885/94‑1 (MQ=60)

                 CCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGT                                                                           >  SRR4302536.4902391/1‑94 (MQ=60)

                  CAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTC                                                                          <  SRR4302536.6621450/94‑1 (MQ=60)

                  CAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTC                                                                          >  SRR4302536.3677649/1‑94 (MQ=60)

                  CAGCTGGATCGCGGTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTGCCGCCTATACTCTCGCCACTGGCC                                                                          >  SRR4302536.130821/1‑94 (MQ=60)

                   AGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCT                                                                         >  SRR4302536.1561813/1‑94 (MQ=60)

                     CTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGA                                                                       >  SRR4302536.4395209/1‑94 (MQ=60)

                      TGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGAT                                                                      <  SRR4302536.6612116/94‑1 (MQ=60)

                       GGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATT                                                                     <  SRR4302536.6471868/94‑1 (MQ=60)

                       GGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATT                                                                     <  SRR4302536.773822/94‑1 (MQ=60)

                        GATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTT                                                                    <  SRR4302536.1007307/94‑1 (MQ=60)

                        GATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTT                                                                    >  SRR4302536.6897095/1‑94 (MQ=60)

                        GATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTT                                                                    >  SRR4302536.3409916/1‑94 (MQ=60)

                         ATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTC                                                                   >  SRR4302536.6500345/1‑94 (MQ=60)

                         ATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTC                                                                   >  SRR4302536.3810301/1‑94 (MQ=60)

                           CGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTA                                                                 >  SRR4302536.6199554/1‑94 (MQ=60)

                           CGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTA                                                                 <  SRR4302536.1959355/94‑1 (MQ=60)

                            GCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAA                                                                >  SRR4302536.1709533/1‑94 (MQ=60)

                            GCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAA                                                                >  SRR4302536.3399701/1‑94 (MQ=60)

                             CGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAG                                                               <  SRR4302536.3123335/94‑1 (MQ=60)

                               TTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGAT                                                             <  SRR4302536.4985135/94‑1 (MQ=60)

                                TTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATG                                                            >  SRR4302536.4558044/1‑94 (MQ=60)

                                TTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATG                                                            >  SRR4302536.3283354/1‑94 (MQ=60)

                                 TCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGT                                                           >  SRR4302536.1741489/1‑94 (MQ=60)

                                  CTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTGCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTA                                                          >  SRR4302536.2034894/1‑94 (MQ=60)

                                  CTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTA                                                          <  SRR4302536.1603091/94‑1 (MQ=60)

                                   TTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTAC                                                         <  SRR4302536.6330717/94‑1 (MQ=60)

                                   TTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTAC                                                         >  SRR4302536.2756113/1‑94 (MQ=60)

                                   TTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTAC                                                         >  SRR4302536.5066796/1‑94 (MQ=60)

                                    TAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACC                                                        >  SRR4302536.2867186/1‑94 (MQ=60)

                                      GATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTC                                                      >  SRR4302536.3163436/1‑94 (MQ=60)

                                      GATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTC                                                      >  SRR4302536.3034785/1‑94 (MQ=60)

                                      GATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTC                                                      >  SRR4302536.4778638/1‑94 (MQ=60)

                                        TCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAG                                                    >  SRR4302536.4517436/1‑94 (MQ=60)

                                          ATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAC                                                  >  SRR4302536.4576389/1‑94 (MQ=60)

                                          ATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAC                                                  <  SRR4302536.2304080/94‑1 (MQ=60)

                                           TATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACC                                                 >  SRR4302536.3184636/1‑94 (MQ=60)

                                           TATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACC                                                 >  SRR4302536.2685413/1‑94 (MQ=60)

                                           TATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACC                                                 >  SRR4302536.1040968/1‑94 (MQ=60)

                                           TATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAACATGCACCTCAGAGC                                                 >  SRR4302536.2305210/1‑94 (MQ=60)

                                            ATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCC                                                >  SRR4302536.6593952/1‑94 (MQ=60)

                                            ATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCC                                                >  SRR4302536.6443608/1‑94 (MQ=60)

                                             TTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCT                                               <  SRR4302536.6040351/94‑1 (MQ=60)

                                             TTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCT                                               <  SRR4302536.941437/94‑1 (MQ=60)

                                             TTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCT                                               <  SRR4302536.3347004/94‑1 (MQ=60)

                                              TTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTA                                              >  SRR4302536.5195516/1‑94 (MQ=60)

                                                GAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACA                                            >  SRR4302536.5840682/1‑94 (MQ=60)

                                                 AAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACAC                                           >  SRR4302536.3468118/1‑94 (MQ=60)

                                                  AAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATCCTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACT                                          <  SRR4302536.4857526/94‑1 (MQ=60)

                                                  AAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACT                                          >  SRR4302536.5274541/1‑94 (MQ=60)

                                                   AAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTT                                         <  SRR4302536.6017015/94‑1 (MQ=60)

                                                    AAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTC                                        <  SRR4302536.2340900/94‑1 (MQ=60)

                                                    AAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTC                                        <  SRR4302536.3306519/94‑1 (MQ=60)

                                                    AAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTC                                        >  SRR4302536.793024/1‑94 (MQ=60)

                                                    AAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTC                                        <  SRR4302536.5243844/94‑1 (MQ=60)

                                                    AAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTC                                        >  SRR4302536.6901330/1‑94 (MQ=60)

                                                     AAGATAGAACCATACTTGCAACATCACAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGAACCTACACTTCG                                       <  SRR4302536.6881026/94‑1 (MQ=60)

                                                     AAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCG                                       <  SRR4302536.2558118/94‑1 (MQ=60)

                                                      AGATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGC                                      >  SRR4302536.3962059/1‑94 (MQ=60)

                                                        ATAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGC                                    <  SRR4302536.6582303/94‑1 (MQ=60)

                                                         TAGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCT                                   >  SRR4302536.3959459/1‑94 (MQ=60)

                                                          AGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTC                                  >  SRR4302536.2076595/1‑94 (MQ=60)

                                                          AGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTC                                  >  SRR4302536.1312491/1‑94 (MQ=60)

                                                          AGAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTC                                  >  SRR4302536.2185678/1‑94 (MQ=60)

                                                           GAAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCC                                 >  SRR4302536.6913781/1‑94 (MQ=60)

                                                            AAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCT                                <  SRR4302536.6131360/94‑1 (MQ=60)

                                                            AAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCT                                >  SRR4302536.3328918/1‑94 (MQ=60)

                                                            AAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCT                                >  SRR4302536.1245488/1‑94 (MQ=60)

                                                            AAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCT                                <  SRR4302536.4635688/94‑1 (MQ=60)

                                                            AAACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCT                                <  SRR4302536.602285/94‑1 (MQ=60)

                                                             AACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTG                               <  SRR4302536.1196585/94‑1 (MQ=60)

                                                             AACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTG                               <  SRR4302536.2376707/94‑1 (MQ=60)

                                                              ACATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGT                              >  SRR4302536.662476/1‑94 (MQ=60)

                                                               CATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTT                             >  SRR4302536.2356641/1‑94 (MQ=60)

                                                               CATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTT                             >  SRR4302536.6002750/1‑94 (MQ=60)

                                                                ATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTA                            >  SRR4302536.470350/1‑94 (MQ=60)

                                                                ATACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTA                            <  SRR4302536.2965085/94‑1 (MQ=60)

                                                                 TACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTAC                           >  SRR4302536.1682608/1‑94 (MQ=60)

                                                                 TACTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTAC                           <  SRR4302536.5192720/94‑1 (MQ=60)

                                                                   CTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACTG                         <  SRR4302536.6627112/94‑1 (MQ=60)

                                                                   CTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAG                         >  SRR4302536.6036310/1‑94 (MQ=60)

                                                                   CTTGCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAG                         >  SRR4302536.2592777/1‑94 (MQ=60)

                                                                    ttgatACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGC                        <  SRR4302536.2272077/89‑1 (MQ=60)

                                                                      GCAACATTCGAGCTGGTCCGGCCTATACTCTCGACACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACTCTTCGCGCTCCTGTTACAGCAC                      <  SRR4302536.6771472/94‑1 (MQ=60)

                                                                      GCAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCAC                      <  SRR4302536.5335875/94‑1 (MQ=60)

                                                                       CAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACG                     >  SRR4302536.688436/1‑94 (MQ=60)

                                                                       CAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACG                     >  SRR4302536.4937798/1‑94 (MQ=60)

                                                                       CAACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACG                     <  SRR4302536.4520097/94‑1 (MQ=60)

                                                                        AACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACCGCACGT                    >  SRR4302536.1186507/1‑94 (MQ=60)

                                                                        AACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGT                    >  SRR4302536.4077142/1‑94 (MQ=60)

                                                                        AACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGT                    <  SRR4302536.5942049/94‑1 (MQ=60)

                                                                        AACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGT                    >  SRR4302536.5543435/1‑94 (MQ=60)

                                                                        AACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGT                    <  SRR4302536.335617/94‑1 (MQ=60)

                                                                        AACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGA                    >  SRR4302536.5021400/1‑94 (MQ=60)

                                                                         ACATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTA                   <  SRR4302536.5953766/94‑1 (MQ=60)

                                                                           ATTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAAC                 >  SRR4302536.2735744/1‑94 (MQ=60)

                                                                            TTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACA                <  SRR4302536.6516022/94‑1 (MQ=60)

                                                                            TTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACA                >  SRR4302536.6113037/1‑94 (MQ=60)

                                                                            TTCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACA                <  SRR4302536.3675878/94‑1 (MQ=60)

                                                                             TCCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACAT               <  SRR4302536.5266510/94‑1 (MQ=60)

                                                                              CCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATA              <  SRR4302536.5443900/94‑1 (MQ=60)

                                                                              CCAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATA              >  SRR4302536.4716100/1‑94 (MQ=60)

                                                                               CAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAG             <  SRR4302536.535909/94‑1 (MQ=60)

                                                                               CAGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAG             >  SRR4302536.5107259/1‑94 (MQ=60)

                                                                                AGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGT            >  SRR4302536.499951/1‑94 (MQ=60)

                                                                                AGCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGT            >  SRR4302536.5086495/1‑94 (MQ=60)

                                                                                 GCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTT           <  SRR4302536.2025659/94‑1 (MQ=60)

                                                                                 GCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTT           <  SRR4302536.6564569/94‑1 (MQ=60)

                                                                                 GCTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTT           <  SRR4302536.5252192/94‑1 (MQ=60)

                                                                                  CTGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTT          <  SRR4302536.4157124/94‑1 (MQ=60)

                                                                                   TGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTG         <  SRR4302536.5284696/94‑1 (MQ=60)

                                                                                   TGGTCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTG         >  SRR4302536.3822711/1‑94 (MQ=60)

                                                                                      TCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTAT      <  SRR4302536.6773629/94‑1 (MQ=60)

                                                                                      TCCGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTAT      <  SRR4302536.5260311/94‑1 (MQ=60)

                                                                                        CGGCCTATGCTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTATAA    <  SRR4302536.5693445/94‑1 (MQ=60)

                                                                                        CGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTATAA    <  SRR4302536.6684078/94‑1 (MQ=60)

                                                                                        CGGCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTATAA    <  SRR4302536.1254103/94‑1 (MQ=60)

                                                                                          GCCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTATAAAA  <  SRR4302536.920860/94‑1 (MQ=60)

GCCACCTCCAAATTTTGCCAGCTGGATCGCGTTTCTTAGATCATATTTGAAAAAAGATAGAAACATACTTGCAACATTCCAGCTGGTCCGACCTATACTCTCGCCACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTATAAAA  >  NC_000913/2459120‑2459303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`