Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,395,250	C→T	G67G (GGG→GGA)	cafA ←	CafA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,395,250	0	C	T	100.0%	869.4 / NA	239	G67G (GGG→GGA)	cafA	CafA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (123/116); total (123/116)

Only 100 of 244 total aligned reads displayed.

GCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTC  >  NC_000913/3395160‑3395339

gcgcACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGtcc                                                                                         >  1:2519857/1‑93 (MQ=255)

  gcACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCaa                                                                                       >  2:2902966/1‑93 (MQ=255)

   ccccGTAAATTGTTTTTGTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAat                                                                                      <  1:4338397/91‑1 (MQ=255)

   cACCGTGAATTTCTTTTTTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAat                                                                                      <  2:5807180/93‑1 (MQ=255)

    cccGTGATTTGCTTTTGTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAata                                                                                     <  2:6134758/92‑1 (MQ=255)

    cccGTGAATTGCTTTTTTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAata                                                                                     <  2:2266158/92‑1 (MQ=255)

    cccGTGAATTCTTTTTTTTCTTCTCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAata                                                                                     <  1:1941814/92‑1 (MQ=255)

     ccGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAatat                                                                                    >  2:2463496/1‑93 (MQ=255)

     ccGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAatat                                                                                    >  2:6245907/1‑93 (MQ=255)

     ccGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAatat                                                                                    >  2:2373452/1‑93 (MQ=255)

         gAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTAc                                                                                >  1:5904619/1‑93 (MQ=255)

         aaaTTGTTTTTGTCCTCCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTAc                                                                                <  1:1738636/92‑1 (MQ=255)

          aaTTGTTTTTTTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACa                                                                               <  2:1349097/93‑1 (MQ=255)

          aaTTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACa                                                                               >  1:6118533/1‑93 (MQ=255)

          aaTTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACa                                                                               <  1:6703133/93‑1 (MQ=255)

           aTTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACaa                                                                              >  2:3426020/1‑93 (MQ=255)

            ttGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACaaa                                                                             >  1:5264008/1‑93 (MQ=255)

             tgtttttGTTCTTCGCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACaaaa                                                                            <  2:1853270/90‑1 (MQ=255)

              gCTTTTGTTCTCCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAg                                                                           <  2:4190036/93‑1 (MQ=255)

               tttttGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAgc                                                                          <  1:4007603/92‑1 (MQ=255)

               cTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAgc                                                                          >  2:6577603/1‑93 (MQ=255)

               cTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAgc                                                                          >  1:3347560/1‑93 (MQ=255)

                ttttGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAgcc                                                                         >  2:5633592/1‑93 (MQ=255)

                   tGTTTTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAgccgcc                                                                      <  1:2315279/93‑1 (MQ=255)

                   tGTTCTCCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAgccgcc                                                                      <  1:1211371/93‑1 (MQ=255)

                    gTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCt                                                                     >  1:2230168/1‑93 (MQ=255)

                     ttcttcACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTg                                                                    >  2:4346590/1‑93 (MQ=255)

                     ttcttcACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTg                                                                    >  1:5827720/1‑93 (MQ=255)

                     ttcttcACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTg                                                                    >  1:183262/1‑93 (MQ=255)

                     ttcttcACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTg                                                                    >  2:1484938/1‑93 (MQ=255)

                     ttcttcACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTg                                                                    >  2:3158326/1‑93 (MQ=255)

                       cttcCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCa                                                                  <  2:2138137/93‑1 (MQ=255)

                       cttcACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGTCTGCa                                                                  >  1:6032659/1‑93 (MQ=255)

                        ttcACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCAt                                                                 >  2:6501808/1‑93 (MQ=255)

                           ccccGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATAcc                                                              <  2:509966/92‑1 (MQ=255)

                           aCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATAcc                                                              >  2:4406440/1‑93 (MQ=255)

                           aCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATAcc                                                              >  1:6410928/1‑93 (MQ=255)

                               gCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGa                                                          <  2:5129172/93‑1 (MQ=255)

                                ccACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGaa                                                         <  2:6352712/93‑1 (MQ=255)

                                ccACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGaa                                                         <  2:701454/93‑1 (MQ=255)

                                  acacaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGt                                                       >  1:2834274/1‑93 (MQ=255)

                                  acacaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGt                                                       >  1:2120377/1‑93 (MQ=255)

                                  acacaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGt                                                       <  1:182641/93‑1 (MQ=255)

                                  acacaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGt                                                       >  1:1304613/1‑93 (MQ=255)

                                  acacaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGt                                                       >  2:1104599/1‑93 (MQ=255)

                                   cacaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTa                                                      >  1:3235313/1‑93 (MQ=255)

                                   cacaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTa                                                      >  2:113322/1‑93 (MQ=255)

                                    acaTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTac                                                     <  1:3684644/93‑1 (MQ=255)

                                     caTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTaca                                                    >  1:4691061/1‑93 (MQ=255)

                                     caTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTaca                                                    <  1:5328412/93‑1 (MQ=255)

                                     caTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTaca                                                    >  1:4005530/1‑93 (MQ=255)

                                     caTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTaca                                                    <  2:5883488/93‑1 (MQ=255)

                                      aTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTacac                                                   >  2:1955825/1‑93 (MQ=255)

                                      aTTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTacac                                                   >  2:841934/1‑93 (MQ=255)

                                       ttCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACg                                                  >  2:2799899/1‑93 (MQ=255)

                                       ttCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACg                                                  >  2:6696163/1‑93 (MQ=255)

                                       ttCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACg                                                  >  2:1674540/1‑93 (MQ=255)

                                          ggTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACt                                               <  2:6468805/93‑1 (MQ=255)

                                          ggTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACt                                               >  1:2967141/1‑93 (MQ=255)

                                          ggTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACt                                               >  1:2770169/1‑93 (MQ=255)

                                           gtgtGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACtt                                              >  2:4530994/1‑93 (MQ=255)

                                              tgCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTaca                                           <  2:1657709/93‑1 (MQ=255)

                                               gCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTacac                                          <  1:634993/93‑1 (MQ=255)

                                               gCGGCATGAGGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTacac                                          <  1:4965676/93‑1 (MQ=255)

                                                 ggCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGa                                        >  1:4269235/1‑93 (MQ=255)

                                                 ggCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGa                                        <  1:211725/93‑1 (MQ=255)

                                                 ggCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGa                                        >  1:3755822/1‑93 (MQ=255)

                                                    atgatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGAccc                                     >  1:6356508/1‑93 (MQ=255)

                                                    atgatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGAccc                                     <  2:3908752/93‑1 (MQ=255)

                                                     tgatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCt                                    <  1:1093422/93‑1 (MQ=255)

                                                     tgatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCt                                    >  1:1464949/1‑93 (MQ=255)

                                                      gatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCtt                                   <  2:1177573/93‑1 (MQ=255)

                                                      gatgTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCtt                                   <  1:4383288/93‑1 (MQ=255)

                                                       atgTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTg                                  <  1:1276847/93‑1 (MQ=255)

                                                         gTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTa                                >  2:1049019/1‑93 (MQ=255)

                                                         gTCGGATGCATGAAGAAACGCGGCGTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTa                                >  2:3742797/1‑93 (MQ=255)

                                                           cGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGa                              <  1:4521682/93‑1 (MQ=255)

                                                               tGCATGAAAAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATAtt                          >  1:6534247/1‑93 (MQ=255)

                                                                 cATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGc                        >  2:4450700/1‑93 (MQ=255)

                                                                 cATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGc                        <  2:2687028/93‑1 (MQ=255)

                                                                  aTGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGcc                       >  1:522326/1‑93 (MQ=255)

                                                                  aTGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGcc                       <  1:3376642/93‑1 (MQ=255)

                                                                  aTGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGcc                       >  1:2858716/1‑93 (MQ=255)

                                                                    gaagaaACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCcta                     >  1:776182/1‑93 (MQ=255)

                                                                       gaaACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCctacta                  >  1:5128774/1‑93 (MQ=255)

                                                                        aaaCGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTAt                 <  2:2879221/93‑1 (MQ=255)

                                                                         aaCGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTAtt                >  1:4193667/1‑93 (MQ=255)

                                                                         aaCGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTAtt                >  1:2479771/1‑93 (MQ=255)

                                                                          aCGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATGCCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTc               <  2:1732134/93‑1 (MQ=255)

                                                                            gcgGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCcg             >  2:3381170/1‑93 (MQ=255)

                                                                              ggCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCcgcg           >  2:4680281/1‑93 (MQ=255)

                                                                              ggCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCcgcg           >  1:1549888/1‑93 (MQ=255)

                                                                               gCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGt          >  2:5647935/1‑93 (MQ=255)

                                                                                cTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTc         >  1:6638509/1‑93 (MQ=255)

                                                                                cTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTc         >  2:3863348/1‑93 (MQ=255)

                                                                                cTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTc         <  1:1146135/93‑1 (MQ=255)

                                                                                 tttATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTcg        >  2:5251018/1‑93 (MQ=255)

                                                                                   tATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTcgcg      >  1:5597692/1‑93 (MQ=255)

                                                                                       cAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTc  <  1:1903291/93‑1 (MQ=255)

                                                                                       cAGTCCAATACCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTc  <  1:2436417/93‑1 (MQ=255)

GCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTC  >  NC_000913/3395160‑3395339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACG  >  NC_000913/3395157‑3395342

GTCGCGCACCGTGAATTGTTTTTGTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGT                                                                                              <  SRR4302536.1340990/94‑1 (MQ=60)

GTCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGT                                                                                              >  SRR4302536.3041146/1‑94 (MQ=60)

GTCGCGCACCGTAAATTGTTTTTGTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGT                                                                                              <  SRR4302536.3609750/94‑1 (MQ=60)

 TCGCGCACCGTGAATTGGTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATTCAGTC                                                                                             >  SRR4302536.612102/1‑94 (MQ=60)

 TCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTC                                                                                             >  SRR4302536.2668959/1‑94 (MQ=60)

  CGCGCACCGTGAATTGTTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCC                                                                                            <  SRR4302536.3176350/94‑1 (MQ=60)

  CGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCC                                                                                            >  SRR4302536.2595824/1‑94 (MQ=60)

  CGCGCACCGTGAATTGCTTTTGTTCTCCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCC                                                                                            <  SRR4302536.3811405/94‑1 (MQ=60)

  CGCGCACCGTAAATTCTTTTTTTTCTCCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCC                                                                                            <  SRR4302536.1403362/94‑1 (MQ=60)

    CCCACGGTGAATTGTTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAA                                                                                          <  SRR4302536.3450879/94‑1 (MQ=60)

      CCCCGTAAATTGTTTTTGTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATA                                                                                        <  SRR4302536.4468335/94‑1 (MQ=60)

      CACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATA                                                                                        >  SRR4302536.131981/1‑94 (MQ=60)

       ccctgGAATTGTTTTTTTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATAT                                                                                       <  SRR4302536.573530/89‑1 (MQ=60)

       cccgtgattttcttttgtcctaccCCCGCCACACATTCGGTGTTCGGCATGATGTCGGATGCATGAAGAACCGCGGCTTTATCCCGTCCAATAT                                                                                       <  SRR4302536.6738083/70‑1 (MQ=60)

       CCCGTGAATTCTTTTTTTTCTTCTCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATAT                                                                                       <  SRR4302536.2000205/94‑1 (MQ=60)

        CCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATC                                                                                      >  SRR4302536.4511352/1‑94 (MQ=60)

        CCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATC                                                                                      >  SRR4302536.2924930/1‑94 (MQ=60)

         cttgtATTGCTTTTGTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCT                                                                                     <  SRR4302536.5821271/89‑1 (MQ=60)

         CGTGAATTGTTTTTGTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCT                                                                                     <  SRR4302536.3968692/94‑1 (MQ=60)

          GTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTA                                                                                    >  SRR4302536.3554693/1‑94 (MQ=60)

           TGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTAC                                                                                   >  SRR4302536.6080454/1‑94 (MQ=60)

            gattgtttttttttctcccCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACA                                                                                  <  SRR4302536.2530573/75‑1 (MQ=60)

            aaattgtttttgtcctcccCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACA                                                                                  <  SRR4302536.1788797/75‑1 (MQ=60)

            GAATTTCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACA                                                                                  <  SRR4302536.3002063/94‑1 (MQ=60)

            GAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACA                                                                                  >  SRR4302536.128270/1‑94 (MQ=60)

            GAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACA                                                                                  >  SRR4302536.6300899/1‑94 (MQ=60)

             AATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAA                                                                                 >  SRR4302536.1139648/1‑94 (MQ=60)

             AATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAA                                                                                 <  SRR4302536.6902208/94‑1 (MQ=60)

              ATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAA                                                                                >  SRR4302536.5420898/1‑94 (MQ=60)

                tgtttttgtttgactCCCGCTACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAG                                                                              <  SRR4302536.6724766/79‑1 (MQ=60)

                 GCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGC                                                                             >  SRR4302536.3446786/1‑94 (MQ=60)

                  ttttttttctcccCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCC                                                                            <  SRR4302536.1296497/81‑1 (MQ=60)

                  TTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCC                                                                            <  SRR4302536.4126527/94‑1 (MQ=60)

                   TTTTTTTCTCCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCG                                                                           <  SRR4302536.653919/94‑1 (MQ=60)

                    TTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGC                                                                          >  SRR4302536.4380920/1‑94 (MQ=60)

                      TTTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCAGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCT                                                                        <  SRR4302536.5267817/94‑1 (MQ=60)

                      TGTTTTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCT                                                                        <  SRR4302536.2385545/94‑1 (MQ=60)

                      TGTTCTTCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCT                                                                        <  SRR4302536.2181592/94‑1 (MQ=60)

                      TGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCT                                                                        >  SRR4302536.2297622/1‑94 (MQ=60)

                      TGTTCTCCCCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCT                                                                        <  SRR4302536.1247772/94‑1 (MQ=60)

                       GTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTG                                                                       >  SRR4302536.188108/1‑94 (MQ=60)

                       GTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTG                                                                       >  SRR4302536.6001349/1‑94 (MQ=60)

                         TCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGTCTGCA                                                                     >  SRR4302536.6212548/1‑94 (MQ=60)

                         TCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCA                                                                     <  SRR4302536.5309572/94‑1 (MQ=60)

                          CTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCAT                                                                    >  SRR4302536.5403113/1‑94 (MQ=60)

                            cccCCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATAC                                                                  <  SRR4302536.1717435/91‑1 (MQ=60)

                             CACCCGCCACGCATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACC                                                                 <  SRR4302536.3458186/94‑1 (MQ=60)

                             CACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACC                                                                 >  SRR4302536.6602461/1‑94 (MQ=60)

                                 CGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGA                                                             <  SRR4302536.6291850/94‑1 (MQ=60)

                                  GCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAA                                                            <  SRR4302536.6883787/94‑1 (MQ=60)

                                    CACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGT                                                          >  SRR4302536.1343571/1‑94 (MQ=60)

                                    CACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGT                                                          >  SRR4302536.2184093/1‑94 (MQ=60)

                                    CACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGT                                                          >  SRR4302536.2918160/1‑94 (MQ=60)

                                    CACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGT                                                          >  SRR4302536.5466119/1‑94 (MQ=60)

                                     ACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTA                                                         >  SRR4302536.3330149/1‑94 (MQ=60)

                                     ACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTA                                                         <  SRR4302536.187472/94‑1 (MQ=60)

                                      CACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTAC                                                        >  SRR4302536.4069500/1‑94 (MQ=60)

                                       ACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACA                                                       <  SRR4302536.3794796/94‑1 (MQ=60)

                                       ACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACA                                                       >  SRR4302536.4832118/1‑94 (MQ=60)

                                       ACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACA                                                       >  SRR4302536.4124389/1‑94 (MQ=60)

                                       ACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACA                                                       <  SRR4302536.1992417/94‑1 (MQ=60)

                                        CATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACAC                                                      <  SRR4302536.5487611/94‑1 (MQ=60)

                                         ATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACG                                                     <  SRR4302536.305041/94‑1 (MQ=60)

                                         ATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACG                                                     >  SRR4302536.4432638/1‑94 (MQ=60)

                                         ATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACG                                                     >  SRR4302536.6197471/1‑94 (MQ=60)

                                          TTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGA                                                    >  SRR4302536.2861230/1‑94 (MQ=60)

                                           TCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGAC                                                   <  SRR4302536.1843475/94‑1 (MQ=60)

                                           TCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGAC                                                   <  SRR4302536.2930199/94‑1 (MQ=60)

                                            CGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACT                                                  >  SRR4302536.3054538/1‑94 (MQ=60)

                                            CGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACT                                                  >  SRR4302536.2852508/1‑94 (MQ=60)

                                            CGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACT                                                  <  SRR4302536.5398154/94‑1 (MQ=60)

                                             GGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTT                                                 <  SRR4302536.4404001/94‑1 (MQ=60)

                                             GGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTT                                                 <  SRR4302536.2223904/94‑1 (MQ=60)

                                             GGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTT                                                 <  SRR4302536.3333230/94‑1 (MQ=60)

                                             GGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTT                                                 >  SRR4302536.65623/1‑94 (MQ=60)

                                              GTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATCCCCGGAAGTACACGACTTA                                                <  SRR4302536.1233831/94‑1 (MQ=60)

                                                GTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACA                                              <  SRR4302536.1377824/94‑1 (MQ=60)

                                                  GCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACG                                            <  SRR4302536.15939/94‑1 (MQ=60)

                                                  GCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACG                                            <  SRR4302536.653762/94‑1 (MQ=60)

                                                  GCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACG                                            <  SRR4302536.2100494/94‑1 (MQ=60)

                                                  GCGGCATGAGGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACG                                            <  SRR4302536.5114854/94‑1 (MQ=60)

                                                   CGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGA                                           >  SRR4302536.4396481/1‑94 (MQ=60)

                                                   CGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGA                                           >  SRR4302536.3868023/1‑94 (MQ=60)

                                                    GGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGAC                                          <  SRR4302536.217332/94‑1 (MQ=60)

                                                      CATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCC                                        >  SRR4302536.6545879/1‑94 (MQ=60)

                                                       ATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCT                                       >  SRR4302536.1508288/1‑94 (MQ=60)

                                                        TGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTT                                      <  SRR4302536.1126231/94‑1 (MQ=60)

                                                        TGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTT                                      <  SRR4302536.4269092/94‑1 (MQ=60)

                                                        TGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTT                                      <  SRR4302536.1637449/94‑1 (MQ=60)

                                                        TGATGTCGGATGCATGAAGAAACGCGGCTGTATCCAGTCCAATATCTACAAAAGCCGCCGGCATGCCCGGAAGTACACGACTTACACGACCCTT                                      <  SRR4302536.6582607/94‑1 (MQ=60)

                                                         GATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTG                                     <  SRR4302536.4514166/94‑1 (MQ=60)

                                                          ATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGT                                    <  SRR4302536.1315072/94‑1 (MQ=60)

                                                            GTCGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAG                                  <  SRR4302536.5719023/94‑1 (MQ=60)

                                                              CGGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGAT                                <  SRR4302536.4657275/94‑1 (MQ=60)

                                                               GGATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATA                               >  SRR4302536.755363/1‑94 (MQ=60)

                                                                GATGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATAT                              >  SRR4302536.1947909/1‑94 (MQ=60)

                                                                 ATGCATGAAAAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATT                             >  SRR4302536.6728884/1‑94 (MQ=60)

                                                                  TGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTG                            <  SRR4302536.6612639/94‑1 (MQ=60)

                                                                  TGCATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTG                            <  SRR4302536.6172243/94‑1 (MQ=60)

                                                                    CATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCC                          >  SRR4302536.2439/1‑94 (MQ=60)

                                                                    CATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCC                          >  SRR4302536.2482595/1‑94 (MQ=60)

                                                                    CATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCC                          >  SRR4302536.2943219/1‑94 (MQ=60)

                                                                    CATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCC                          >  SRR4302536.535701/1‑94 (MQ=60)

                                                                     ATGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCT                         <  SRR4302536.3476970/94‑1 (MQ=60)

                                                                      TGAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTA                        >  SRR4302536.798927/1‑94 (MQ=60)

                                                                       GAAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTAC                       <  SRR4302536.636684/94‑1 (MQ=60)

                                                                        AAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACT                      >  SRR4302536.5007813/1‑94 (MQ=60)

                                                                        AAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACT                      >  SRR4302536.1887656/1‑94 (MQ=60)

                                                                        AAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACT                      <  SRR4302536.4733077/94‑1 (MQ=60)

                                                                        AAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACT                      <  SRR4302536.4691203/94‑1 (MQ=60)

                                                                        AAGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACT                      <  SRR4302536.1451098/94‑1 (MQ=60)

                                                                         AGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTA                     >  SRR4302536.2848368/1‑94 (MQ=60)

                                                                         AGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTA                     >  SRR4302536.5281975/1‑94 (MQ=60)

                                                                         AGAAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTA                     <  SRR4302536.2579042/94‑1 (MQ=60)

                                                                           AAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATT                   >  SRR4302536.4318301/1‑94 (MQ=60)

                                                                           AAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATT                   >  SRR4302536.1908774/1‑94 (MQ=60)

                                                                           AAACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATT                   >  SRR4302536.2554603/1‑94 (MQ=60)

                                                                            AACGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGACTACTATTC                  >  SRR4302536.6012078/1‑94 (MQ=60)

                                                                              CGCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCG                >  SRR4302536.2005146/1‑94 (MQ=60)

                                                                               GCGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGC               <  SRR4302536.4599723/94‑1 (MQ=60)

                                                                                CGGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCG              >  SRR4302536.1595435/1‑94 (MQ=60)

                                                                                 GGCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGT             >  SRR4302536.3216147/1‑94 (MQ=60)

                                                                                  GCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTC            <  SRR4302536.2260649/94‑1 (MQ=60)

                                                                                  GCTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTC            >  SRR4302536.6835925/1‑94 (MQ=60)

                                                                                   CTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCG           <  SRR4302536.1180602/94‑1 (MQ=60)

                                                                                   CTTTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCA           <  SRR4302536.3849826/94‑1 (MQ=60)

                                                                                     TTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCG         >  SRR4302536.5250405/1‑94 (MQ=60)

                                                                                     TTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCG         >  SRR4302536.2641116/1‑94 (MQ=60)

                                                                                     TTATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCG         >  SRR4302536.5764096/1‑94 (MQ=60)

                                                                                      TATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGC        <  SRR4302536.233349/94‑1 (MQ=60)

                                                                                       ATCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCC       >  SRR4302536.2554597/1‑94 (MQ=60)

                                                                                        TCCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCT      <  SRR4302536.5884023/94‑1 (MQ=60)

                                                                                         CCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTC     >  SRR4302536.4125894/1‑94 (MQ=60)

                                                                                         CCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTC     >  SRR4302536.4186863/1‑94 (MQ=60)

                                                                                         CCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTC     <  SRR4302536.6797100/94‑1 (MQ=60)

                                                                                         CCAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGCCGCGCCTC     <  SRR4302536.5565161/94‑1 (MQ=60)

                                                                                          CAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCA    <  SRR4302536.1960597/94‑1 (MQ=60)

                                                                                          CAGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCA    <  SRR4302536.6321605/94‑1 (MQ=60)

                                                                                          CAGTCCAATACCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCA    <  SRR4302536.2510073/94‑1 (MQ=60)

                                                                                           AGTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCAC   <  SRR4302536.6473486/94‑1 (MQ=60)

                                                                                            GTCCAATATCTACAAAAGCCGCCTGCATCCCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACG  <  SRR4302536.17242/94‑1 (MQ=60)

                                                                                            GTCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACG  <  SRR4302536.3405227/94‑1 (MQ=60)

GTCGCGCACCGTGAATTGCTTTTGTTCTTCACCCGCCACACATTCGGTGTGCGGCATGATGTCGGATGCATGAAGAAACGCGGCTTTATCCAGCCCAATATCTACAAAAGCCGCCTGCATACCCGGAAGTACACGACTTACACGACCCTTGTAGATATTGCCTACTATTCCGCGTCGCGCCTCACG  >  NC_000913/3395157‑3395342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`