Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,494,690	A→G	A17A (GCA→GCG)	nirC →	Nitrite transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,494,690	0	A	G	100.0%	706.3 / NA	218	A17A (GCA→GCG)	nirC	Nitrite transporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (165/53); total (165/53)

Only 100 of 224 total aligned reads displayed.

TTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCA  >  NC_000913/3494600‑3494778

 tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTgcgcgc                                                                                       >  1:2042382/1‑93 (MQ=255)

   ttttATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCt                                                                                     >  1:6694601/1‑93 (MQ=255)

      tATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTc                                                                                  >  2:1260975/1‑93 (MQ=255)

        ttttttGTTTTTATTTTTTAAAGGATAATCAAATGTTTAGAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCgg                                                                                >  2:6644247/1‑93 (MQ=255)

        ttttttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCgg                                                                                >  2:4455099/1‑93 (MQ=255)

         tttttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGc                                                                               <  2:5738489/93‑1 (MQ=255)

          ttttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCa                                                                              >  1:6604537/1‑93 (MQ=255)

          ttttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCa                                                                              >  1:4320859/1‑93 (MQ=255)

           tttGTTTTTATTTTTTAACGGATAATCAAATGTTTACAGACACTATTAATAAGTCTGCGGCCAACGCTGCGAGCATTGCGTGCCTGTTCGCaa                                                                             >  1:3181455/1‑93 (MQ=255)

           tttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCaa                                                                             <  1:2258479/93‑1 (MQ=255)

           tttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCaa                                                                             >  2:6051608/1‑93 (MQ=255)

           tttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCaa                                                                             >  2:6670131/1‑93 (MQ=255)

              gTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATa                                                                          <  2:3769390/93‑1 (MQ=255)

              gTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATa                                                                          <  1:159289/93‑1 (MQ=255)

              gTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATa                                                                          >  1:4220539/1‑93 (MQ=255)

               tttttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATaa                                                                         <  2:6483031/93‑1 (MQ=255)

               tttttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATaa                                                                         >  2:4507690/1‑93 (MQ=255)

                 tttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAcc                                                                       >  1:3676223/1‑93 (MQ=255)

                 tttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAcc                                                                       <  1:2627382/93‑1 (MQ=255)

                 tttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAcc                                                                       <  2:3482901/93‑1 (MQ=255)

                  ttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAccc                                                                      >  2:1668158/1‑93 (MQ=255)

                   tATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCg                                                                     >  1:1061870/1‑93 (MQ=255)

                    aTTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGc                                                                    >  1:2522015/1‑93 (MQ=255)

                    aTTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGc                                                                    <  1:5225195/93‑1 (MQ=255)

                     ttttttAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCt                                                                   >  2:2235393/1‑93 (MQ=255)

                       ttttAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCg                                                                 >  2:101244/1‑93 (MQ=255)

                        tttAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCgg                                                                >  1:3824129/1‑93 (MQ=255)

                           aaaGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCtt                                                             <  2:803651/93‑1 (MQ=255)

                           aaaGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCtt                                                             >  1:5876638/1‑93 (MQ=255)

                             aGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCtttt                                                           >  1:6175151/1‑93 (MQ=255)

                                 tAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTTGGt                                                       >  2:4621205/1‑93 (MQ=255)

                                 tAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGt                                                       >  1:3491036/1‑93 (MQ=255)

                                 tAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGt                                                       <  1:3146142/93‑1 (MQ=255)

                                 tAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGt                                                       >  2:5545201/1‑93 (MQ=255)

                                   aTCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCa                                                     <  2:3049041/93‑1 (MQ=255)

                                   aTCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCa                                                     >  1:6301165/1‑93 (MQ=255)

                                   aTCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCa                                                     >  1:2464790/1‑93 (MQ=255)

                                     cAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGc                                                   >  1:1473032/1‑93 (MQ=255)

                                      aaaTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCt                                                  >  1:1142421/1‑93 (MQ=255)

                                       aaTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTc                                                 >  1:3757818/1‑93 (MQ=255)

                                        aTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTcc                                                >  2:2560770/1‑93 (MQ=255)

                                        aTGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTcc                                                >  1:2418784/1‑93 (MQ=255)

                                         tGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCg                                               >  1:5367057/1‑93 (MQ=255)

                                           tttACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGcc                                             >  2:6364958/1‑93 (MQ=255)

                                            ttACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCa                                            >  2:1615472/1‑93 (MQ=255)

                                             tACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCAt                                           <  2:1407526/93‑1 (MQ=255)

                                              aCAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATg                                          <  2:4172719/93‑1 (MQ=255)

                                               cAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATgg                                         >  1:3285033/1‑93 (MQ=255)

                                               cAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATgg                                         >  2:4315153/1‑93 (MQ=255)

                                                 gACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcg                                       >  1:5576108/1‑93 (MQ=255)

                                                   cacTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcggg                                     >  2:5726835/1‑93 (MQ=255)

                                                   cacTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcggg                                     >  1:1798557/1‑93 (MQ=255)

                                                   cacTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcggg                                     >  2:3556489/1‑93 (MQ=255)

                                                    acTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcgggc                                    <  2:833603/93‑1 (MQ=255)

                                                     cTATTAATAAGTGTGCTGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcgggcg                                   >  2:6135500/1‑93 (MQ=255)

                                                     cTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcgggcg                                   >  1:1367217/1‑93 (MQ=255)

                                                     cTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcgggcg                                   >  2:352637/1‑93 (MQ=255)

                                                      tATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGgcgc                                  >  1:664228/1‑93 (MQ=255)

                                                      tATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGgcgc                                  >  2:3720458/1‑93 (MQ=255)

                                                      tATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGATCAGCTCCGCCATGGCGGgcgc                                  >  2:5375641/1‑93 (MQ=255)

                                                       aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGcgcg                                 >  2:233426/1‑93 (MQ=255)

                                                       aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGcgcg                                 >  1:4815145/1‑93 (MQ=255)

                                                        ttAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGt                                >  1:447652/1‑93 (MQ=255)

                                                        ttAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGt                                >  1:3994025/1‑93 (MQ=255)

                                                        ttAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGt                                >  1:2969629/1‑93 (MQ=255)

                                                        ttAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGt                                >  2:2418086/1‑93 (MQ=255)

                                                        taaataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGt                                >  1:6413958/3‑93 (MQ=255)

                                                          aataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAt                              >  2:3326474/1‑93 (MQ=255)

                                                          aataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAt                              <  1:4750915/93‑1 (MQ=255)

                                                          aataaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAt                              <  2:4962090/93‑1 (MQ=255)

                                                            taaGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtgt                            <  2:5283560/93‑1 (MQ=255)

                                                              aGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTgg                          <  1:5759995/93‑1 (MQ=255)

                                                               gtgtGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGgggg                         >  1:6498760/1‑93 (MQ=255)

                                                               gtgtGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTggg                         >  2:1955756/1‑93 (MQ=255)

                                                               gtgtGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGAGTATGTggg                         >  1:6049578/1‑93 (MQ=255)

                                                                tgtgCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGt                        <  1:2310616/93‑1 (MQ=255)

                                                                 gtgCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTc                       <  2:3246257/93‑1 (MQ=255)

                                                                   gCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCtt                     <  1:2867882/93‑1 (MQ=255)

                                                                     ggCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTgg                   >  1:694265/1‑93 (MQ=255)

                                                                     ggCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTgg                   <  1:5612770/93‑1 (MQ=255)

                                                                      gCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTggg                  <  2:2122190/93‑1 (MQ=255)

                                                                      gCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGCCGGGCGCGTATGTGGGTCTTggg                  >  2:1925449/1‑93 (MQ=255)

                                                                       cTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGGGGGGCTTgggt                 >  1:4775500/1‑92 (MQ=255)

                                                                        tAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGat                >  2:5466264/1‑93 (MQ=255)

                                                                         aaCGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGatc               >  2:4199988/1‑93 (MQ=255)

                                                                         aaCGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGatc               >  1:4110340/1‑93 (MQ=255)

                                                                          aCGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGatca              >  2:40126/1‑93 (MQ=255)

                                                                             cTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATcc           >  2:4435324/1‑93 (MQ=255)

                                                                             cTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATcc           <  2:5106231/93‑1 (MQ=255)

                                                                             cTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATcc           <  1:1997324/93‑1 (MQ=255)

                                                                              tGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATTCt          >  1:3725568/1‑93 (MQ=255)

                                                                              tGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCt          >  2:2665085/1‑93 (MQ=255)

                                                                                   gcATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGAttt     >  2:2765222/1‑93 (MQ=255)

                                                                                   gcATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGAttt     >  1:1002179/1‑93 (MQ=255)

                                                                                   gcATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGAttt     <  2:6609598/93‑1 (MQ=255)

                                                                                   gcATTGCGCGCATGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGAttt     <  2:2158965/93‑1 (MQ=255)

                                                                                    cATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGAtttt    >  2:876527/1‑93 (MQ=255)

                                                                                     aTTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTc   >  2:625517/1‑93 (MQ=255)

                                                                                     aTTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTc   >  2:5971462/1‑93 (MQ=255)

                                                                                     aTTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTc   >  2:394813/1‑93 (MQ=255)

TTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCA  >  NC_000913/3494600‑3494778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTC  >  NC_000913/3494597‑3494783

TTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCG                                                                                               >  SRR4302536.2527292/1‑94 (MQ=60)

   TTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGC                                                                                            >  SRR4302536.3952365/1‑94 (MQ=60)

   TTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGC                                                                                            >  SRR4302536.2103876/1‑94 (MQ=60)

    TGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCC                                                                                           >  SRR4302536.1571996/1‑94 (MQ=60)

     GTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCT                                                                                          >  SRR4302536.6893418/1‑94 (MQ=60)

        TTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTC                                                                                       >  SRR4302536.3858067/1‑94 (MQ=60)

        TTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTC                                                                                       >  SRR4302536.2531412/1‑94 (MQ=60)

         TATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCG                                                                                      >  SRR4302536.2572676/1‑94 (MQ=60)

         TAATTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACTCTGCGCGCATTGCGCGCCTGTCG                                                                                      >  SRR4302536.5467693/1‑94 (MQ=60)

          ATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGG                                                                                     >  SRR4302536.537104/1‑94 (MQ=60)

          ATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGG                                                                                     >  SRR4302536.2643998/1‑94 (MQ=60)

           TTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGC                                                                                    >  SRR4302536.6550314/1‑94 (MQ=60)

           TTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGC                                                                                    >  SRR4302536.3378222/1‑94 (MQ=60)

            TTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCA                                                                                   >  SRR4302536.6800956/1‑94 (MQ=60)

            TTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCA                                                                                   >  SRR4302536.4450229/1‑94 (MQ=60)

              TTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAA                                                                                 <  SRR4302536.2326855/94‑1 (MQ=60)

               TTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAAT                                                                                >  SRR4302536.2560297/1‑94 (MQ=60)

                TGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATA                                                                               >  SRR4302536.4346101/1‑94 (MQ=60)

                TGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATA                                                                               <  SRR4302536.4378749/94‑1 (MQ=60)

                TGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATA                                                                               >  SRR4302536.1068689/1‑94 (MQ=60)

                TGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATA                                                                               <  SRR4302536.3133351/94‑1 (MQ=60)

                TGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATA                                                                               >  SRR4302536.2098409/1‑94 (MQ=60)

                 GTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAA                                                                              <  SRR4302536.163411/94‑1 (MQ=60)

                  TTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAC                                                                             >  SRR4302536.6414637/1‑94 (MQ=60)

                  TTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAAC                                                                             >  SRR4302536.3980877/1‑94 (MQ=60)

                   TTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACC                                                                            >  SRR4302536.3786130/1‑94 (MQ=60)

                   TTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACC                                                                            >  SRR4302536.2769247/1‑94 (MQ=60)

                    TTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCC                                                                           <  SRR4302536.2706161/94‑1 (MQ=60)

                     TTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCG                                                                          >  SRR4302536.1093629/1‑94 (MQ=60)

                      TATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGC                                                                         >  SRR4302536.2598041/1‑94 (MQ=60)

                      TATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGC                                                                         >  SRR4302536.6157585/1‑94 (MQ=60)

                       ATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCT                                                                        <  SRR4302536.5380898/94‑1 (MQ=60)

                         TTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCG                                                                      >  SRR4302536.624723/1‑94 (MQ=60)

                          TTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGG                                                                     >  SRR4302536.1542226/1‑94 (MQ=60)

                          TTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGG                                                                     >  SRR4302536.3938062/1‑94 (MQ=60)

                          TTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGG                                                                     <  SRR4302536.3205978/94‑1 (MQ=60)

                            TTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCT                                                                   <  SRR4302536.342510/94‑1 (MQ=60)

                             TAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTT                                                                  >  SRR4302536.6051681/1‑94 (MQ=60)

                               AAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTT                                                                >  SRR4302536.6359079/1‑94 (MQ=60)

                               AAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTT                                                                >  SRR4302536.4903618/1‑94 (MQ=60)

                               AAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTT                                                                >  SRR4302536.1675089/1‑94 (MQ=60)

                               AAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTT                                                                >  SRR4302536.215248/1‑94 (MQ=60)

                               AAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTT                                                                >  SRR4302536.4700882/1‑94 (MQ=60)

                                AGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTG                                                               <  SRR4302536.1111982/94‑1 (MQ=60)

                                AGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTG                                                               >  SRR4302536.298461/1‑94 (MQ=60)

                                AGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTG                                                               >  SRR4302536.132885/1‑94 (MQ=60)

                                 GGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGG                                                              <  SRR4302536.6934792/94‑1 (MQ=60)

                                   ATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGT                                                            >  SRR4302536.3239658/1‑94 (MQ=60)

                                   ATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGT                                                            >  SRR4302536.2352737/1‑94 (MQ=60)

                                   ATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGT                                                            >  SRR4302536.6046936/1‑94 (MQ=60)

                                   ATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGT                                                            >  SRR4302536.3595172/1‑94 (MQ=60)

                                    TAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTC                                                           <  SRR4302536.3238259/94‑1 (MQ=60)

                                     AATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCA                                                          >  SRR4302536.6488868/1‑94 (MQ=60)

                                     AATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCA                                                          >  SRR4302536.2539217/1‑94 (MQ=60)

                                      ATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAG                                                         >  SRR4302536.493923/1‑94 (MQ=60)

                                      ATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAG                                                         >  SRR4302536.6848513/1‑94 (MQ=60)

                                       TCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGC                                                        >  SRR4302536.1516591/1‑94 (MQ=60)

                                        CAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCT                                                       >  SRR4302536.1176776/1‑94 (MQ=60)

                                         AAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTC                                                      >  SRR4302536.3870075/1‑94 (MQ=60)

                                          AATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCC                                                     >  SRR4302536.2491936/1‑94 (MQ=60)

                                           ATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCG                                                    >  SRR4302536.5527114/1‑94 (MQ=60)

                                           ATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCG                                                    >  SRR4302536.2112024/1‑94 (MQ=60)

                                           ATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCG                                                    >  SRR4302536.4762752/1‑94 (MQ=60)

                                            TGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGC                                                   <  SRR4302536.378147/94‑1 (MQ=60)

                                                 ACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGG                                              >  SRR4302536.3381656/1‑94 (MQ=60)

                                                  CAGACACTATTAATAAGTGTTCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGC                                             >  SRR4302536.6764662/1‑94 (MQ=60)

                                                   AGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCG                                            >  SRR4302536.5742086/1‑94 (MQ=60)

                                                     ACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGG                                          >  SRR4302536.6491706/1‑94 (MQ=60)

                                                     ACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGG                                          >  SRR4302536.1852847/1‑94 (MQ=60)

                                                       ACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCG                                        >  SRR4302536.4127608/1‑94 (MQ=60)

                                                       ACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCG                                        >  SRR4302536.1407971/1‑94 (MQ=60)

                                                       ACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCG                                        <  SRR4302536.5191220/94‑1 (MQ=60)

                                                        CTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGC                                       >  SRR4302536.683711/1‑94 (MQ=60)

                                                         TATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCG                                      >  SRR4302536.55307/1‑94 (MQ=60)

                                                         TATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCG                                      >  SRR4302536.4960024/1‑94 (MQ=60)

                                                          ATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGT                                     >  SRR4302536.4112548/1‑94 (MQ=60)

                                                          ATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGT                                     >  SRR4302536.459418/1‑94 (MQ=60)

                                                          ATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGT                                     >  SRR4302536.3057094/1‑94 (MQ=60)

                                                          ATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGT                                     >  SRR4302536.1931822/1‑94 (MQ=60)

                                                          ATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGT                                     >  SRR4302536.5744097/1‑94 (MQ=60)

                                                          ATTAATAAGTGCGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGTGT                                     >  SRR4302536.866414/1‑94 (MQ=60)

                                                          ATAAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGT                                     >  SRR4302536.6605598/1‑94 (MQ=60)

                                                            TAATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAT                                   >  SRR4302536.4551512/1‑94 (MQ=60)

                                                             AATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATG                                  <  SRR4302536.4893879/94‑1 (MQ=60)

                                                             AATAAGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATG                                  <  SRR4302536.686766/94‑1 (MQ=60)

                                                                 AGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGG                              >  SRR4302536.3873868/1‑94 (MQ=60)

                                                                 AGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGG                              <  SRR4302536.5931344/94‑1 (MQ=60)

                                                                 AGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGGGGG                              >  SRR4302536.6692480/1‑94 (MQ=60)

                                                                 AGTGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGAGTATGTGGG                              >  SRR4302536.6230013/1‑94 (MQ=60)

                                                                   TGTGCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTC                            <  SRR4302536.2380745/94‑1 (MQ=60)

                                                                     TGCGGCTAACGCTGCGCGCATTGCGCGCCTGACGGCAAATAACCCGCTCGGCTTTTCGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTG                          >  SRR4302536.5683930/1‑94 (MQ=60)

                                                                      GCGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTG                         <  SRR4302536.2952595/94‑1 (MQ=60)

                                                                       CGGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGG                        >  SRR4302536.714547/1‑94 (MQ=60)

                                                                        GGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGG                       >  SRR4302536.1447028/1‑94 (MQ=60)

                                                                        GGCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGG                       <  SRR4302536.5779508/94‑1 (MQ=60)

                                                                         GCTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGGGGGGCTTGGGT                      >  SRR4302536.4919288/1‑94 (MQ=60)

                                                                          CTAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGGATGTGGGGCTTGGGAT                     >  SRR4302536.5948120/1‑94 (MQ=60)

                                                                           TAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTGAGTGGGTCTTGGGCTC                    >  SRR4302536.6673262/1‑94 (MQ=60)

                                                                           TAACGCTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATC                    >  SRR4302536.4232276/1‑94 (MQ=60)

                                                                                CTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATTCT               >  SRR4302536.3836930/1‑94 (MQ=60)

                                                                                CTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCT               >  SRR4302536.3629467/1‑94 (MQ=60)

                                                                                CTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCT               <  SRR4302536.2057425/94‑1 (MQ=60)

                                                                                CTGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCT               >  SRR4302536.3745693/1‑94 (MQ=60)

                                                                                 TGCGCGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGGATGTGGGTCTTGGGATCATCCTG              >  SRR4302536.2434482/1‑94 (MQ=60)

                                                                                     CGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTT          >  SRR4302536.1031754/1‑94 (MQ=60)

                                                                                     CGCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTT          >  SRR4302536.6835948/1‑94 (MQ=60)

                                                                                      GCATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGGATGTGGGTCTTGGGATCATCCTGGTTTT         >  SRR4302536.4254203/1‑94 (MQ=60)

                                                                                        ATTGCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGGCTTGGGATCATCCTGATTTTCA       >  SRR4302536.5780782/1‑94 (MQ=60)

                                                                                           GCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGC    >  SRR4302536.1012470/1‑94 (MQ=60)

                                                                                           GCGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGC    <  SRR4302536.2005336/94‑1 (MQ=60)

                                                                                           GCGCGCCGGTCGGCAAATAACCCGCTCGGCTTTTGGGTGAGATCCGCCATGGCGGGCGggtattggggtgtttggattattctggttttcatac    >  SRR4302536.5894193/1‑58 (MQ=53)

                                                                                            CGCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCT   >  SRR4302536.3010539/1‑94 (MQ=60)

                                                                                             GCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTC  >  SRR4302536.1201518/1‑94 (MQ=60)

                                                                                             GCGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTC  >  SRR4302536.1491977/1‑94 (MQ=60)

TTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTC  >  NC_000913/3494597‑3494783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`