Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,507,831	T→C	T262A (ACT→GCT)	yhfX ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,507,831	0	T	C	100.0%	761.4 / NA	232	T262A (ACT→GCT)	yhfX	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/121); total (111/121)

Only 100 of 241 total aligned reads displayed.

AGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGT  >  NC_000913/3507741‑3507920

aGCTGTCGCCACGGAGATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAgcgc                                                                                         <  2:4112732/93‑1 (MQ=255)

aGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAgcgc                                                                                         >  1:4634857/1‑93 (MQ=255)

 gCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGcc                                                                                        >  1:109077/1‑93 (MQ=255)

 gCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGcc                                                                                        >  2:1378102/1‑93 (MQ=255)

   tGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCg                                                                                      >  2:3830127/1‑93 (MQ=255)

    gTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGt                                                                                     <  1:1676165/93‑1 (MQ=255)

    gTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGt                                                                                     >  1:6269169/1‑93 (MQ=255)

    gTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGt                                                                                     >  2:6117252/1‑93 (MQ=255)

    gTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGt                                                                                     >  2:4085294/1‑93 (MQ=255)

     tCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTc                                                                                    <  1:1001381/93‑1 (MQ=255)

      cGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCa                                                                                   >  2:3176007/1‑93 (MQ=255)

       gCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAg                                                                                  >  1:4102117/1‑93 (MQ=255)

        ccACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAgc                                                                                 <  2:4564171/93‑1 (MQ=255)

        ccACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAgc                                                                                 <  2:886249/93‑1 (MQ=255)

         cACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAgcg                                                                                >  2:3569901/1‑93 (MQ=255)

          aCGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAgcgc                                                                               <  2:4675057/93‑1 (MQ=255)

          aCGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAgcgc                                                                               >  1:3441886/1‑93 (MQ=255)

            ggAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCAt                                                                             >  1:4799899/1‑93 (MQ=255)

              aaaTGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGa                                                                           <  1:1393138/93‑1 (MQ=255)

               aaTGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGAc                                                                          >  1:1440312/1‑93 (MQ=255)

                atgatgGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGAcc                                                                         <  1:3548853/93‑1 (MQ=255)

                atgatgGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGAcc                                                                         >  2:4652603/1‑93 (MQ=255)

                atgatgGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGAcc                                                                         <  1:679076/93‑1 (MQ=255)

                atgatgGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGAcc                                                                         >  1:5147362/1‑93 (MQ=255)

                 tgatgGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCg                                                                        >  2:6458641/1‑93 (MQ=255)

                 tgatgGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCg                                                                        <  2:701669/93‑1 (MQ=255)

                  gatgGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCgg                                                                       >  1:984979/1‑93 (MQ=255)

                    tgGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGt                                                                     <  2:5588244/93‑1 (MQ=255)

                     gggAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGtt                                                                    <  2:2147169/93‑1 (MQ=255)

                      ggAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTc                                                                   <  2:1098064/93‑1 (MQ=255)

                      ggAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTc                                                                   <  1:2115828/93‑1 (MQ=255)

                       gagaTTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCg                                                                  <  2:321394/93‑1 (MQ=255)

                       gagaTTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCg                                                                  >  1:842108/1‑93 (MQ=255)

                        agaTTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCgg                                                                 >  1:3978795/1‑93 (MQ=255)

                         gaTTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGc                                                                <  2:6084745/93‑1 (MQ=255)

                         gaTTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGc                                                                >  1:615822/1‑93 (MQ=255)

                          aTTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCACATGACCGGGTTCGGCa                                                               >  1:5693142/1‑93 (MQ=255)

                           tttCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATTGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCAt                                                              >  1:227812/1‑93 (MQ=255)

                           tttCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCAt                                                              <  1:4992168/93‑1 (MQ=255)

                             tCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGa                                                            <  1:3374822/93‑1 (MQ=255)

                              cACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGGTCGGCATGAg                                                           >  1:2177173/1‑93 (MQ=255)

                               aCTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGt                                                          >  1:4562696/1‑93 (MQ=255)

                               aCTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGt                                                          >  2:2833684/1‑93 (MQ=255)

                                cTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTc                                                         <  2:5717242/93‑1 (MQ=255)

                                 ttAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTca                                                        >  2:4298488/1‑93 (MQ=255)

                                 ttAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTca                                                        >  1:4468125/1‑93 (MQ=255)

                                   aaCCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTcaca                                                      <  1:5967230/93‑1 (MQ=255)

                                   aaCCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTcaca                                                      >  2:2254129/1‑93 (MQ=255)

                                    aCCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCacac                                                     >  2:2603192/1‑93 (MQ=255)

                                     ccAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACAcc                                                    >  2:592024/1‑93 (MQ=255)

                                     ccAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACAcc                                                    >  2:5406642/1‑93 (MQ=255)

                                       agagCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGt                                                  >  2:1995841/1‑93 (MQ=255)

                                        gagCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTa                                                 <  2:5487269/93‑1 (MQ=255)

                                         agCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTAt                                                <  1:3147112/93‑1 (MQ=255)

                                          gCATCGCGTTACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTAtt                                               >  1:6533385/1‑93 (MQ=255)

                                            aTCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATATCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTgc                                             >  1:5291267/1‑93 (MQ=255)

                                            aTCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTgc                                             <  1:4421131/93‑1 (MQ=255)

                                            aTCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGGTCGGCATGAGTCACAACGTATTgc                                             >  1:2449954/1‑93 (MQ=255)

                                             tCGCGATACGTTCAGGTTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTgcg                                            <  2:4911674/93‑1 (MQ=255)

                                                 gATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAg                                        <  2:2209298/93‑1 (MQ=255)

                                                  aTACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGt                                       >  1:354286/1‑93 (MQ=255)

                                                  aTACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGt                                       <  2:2902829/93‑1 (MQ=255)

                                                  aTACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGt                                       >  1:3850958/1‑93 (MQ=255)

                                                   tACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTa                                      <  1:1213489/93‑1 (MQ=255)

                                                    aCGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTaa                                     <  1:2627092/93‑1 (MQ=255)

                                                     cGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAAt                                    <  1:2550126/93‑1 (MQ=255)

                                                       ttCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATgg                                  >  1:1917542/1‑93 (MQ=255)

                                                         cAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCa                                <  2:1212608/93‑1 (MQ=255)

                                                         cAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCa                                >  1:2950538/1‑93 (MQ=255)

                                                          aGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAg                               >  2:1497672/1‑93 (MQ=255)

                                                           ggCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCacc                              >  2:4813861/1‑91 (MQ=255)

                                                           ggCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGc                              >  2:5292178/1‑93 (MQ=255)

                                                              tGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGaa                           <  1:579871/93‑1 (MQ=255)

                                                               gATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAg                          <  2:3097802/93‑1 (MQ=255)

                                                               gATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAg                          >  2:6374934/1‑93 (MQ=255)

                                                               gATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAg                          <  2:1902544/93‑1 (MQ=255)

                                                                aTCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGt                         >  2:4194171/1‑93 (MQ=255)

                                                                   gCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCa                      >  2:6405091/1‑93 (MQ=255)

                                                                    cccTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAg                     >  1:4436271/1‑93 (MQ=255)

                                                                     ccTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGc                    >  2:506882/1‑93 (MQ=255)

                                                                     ccTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGc                    <  2:1789228/93‑1 (MQ=255)

                                                                      ctgctgGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCt                   >  2:849362/1‑93 (MQ=255)

                                                                       tgctgGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTg                  >  1:5189579/1‑93 (MQ=255)

                                                                       tgctgGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTg                  <  2:3422680/93‑1 (MQ=255)

                                                                         gtgGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGt                <  2:436713/92‑1 (MQ=255)

                                                                           ggTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCg              <  1:2945637/93‑1 (MQ=255)

                                                                            gTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGc             <  1:239926/93‑1 (MQ=255)

                                                                            gTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGc             <  2:2435453/93‑1 (MQ=255)

                                                                            gTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGc             <  2:1920968/93‑1 (MQ=255)

                                                                             tttGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCt            >  1:4236606/1‑93 (MQ=255)

                                                                               tGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGa          <  1:6362707/93‑1 (MQ=255)

                                                                                gCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGaa         >  1:4499307/1‑93 (MQ=255)

                                                                                 ccGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAg        >  2:284795/1‑93 (MQ=255)

                                                                                  cGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAgg       >  2:2793965/1‑93 (MQ=255)

                                                                                  cGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAgg       <  1:432209/93‑1 (MQ=255)

                                                                                   ggAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGgc      <  1:885553/93‑1 (MQ=255)

                                                                                    gAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGgcg     <  2:3587101/93‑1 (MQ=255)

                                                                                    gAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGgcg     <  2:98067/93‑1 (MQ=255)

                                                                                     aaTAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGgcgc    <  1:488274/93‑1 (MQ=255)

                                                                                       tAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGt  <  1:1798926/93‑1 (MQ=255)

AGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGT  >  NC_000913/3507741‑3507920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGTTCAG  >  NC_000913/3507739‑3507924

GTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCG                                                                                              <  SRR4302536.6906654/94‑1 (MQ=60)

 TAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGC                                                                                             >  SRR4302536.4774147/1‑94 (MQ=60)

  AGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCC                                                                                            >  SRR4302536.111970/1‑94 (MQ=60)

   GCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCC                                                                                           >  SRR4302536.963042/1‑94 (MQ=60)

   GCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCC                                                                                           <  SRR4302536.1513140/94‑1 (MQ=60)

     TGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGT                                                                                         <  SRR4302536.871016/94‑1 (MQ=60)

     TGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGT                                                                                         <  SRR4302536.1352447/94‑1 (MQ=60)

     TGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGT                                                                                         >  SRR4302536.6455946/1‑94 (MQ=60)

      GTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTC                                                                                        <  SRR4302536.1724766/94‑1 (MQ=60)

       TCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCA                                                                                       <  SRR4302536.1030924/94‑1 (MQ=60)

        CGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAG                                                                                      >  SRR4302536.4223816/1‑94 (MQ=60)

         GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGC                                                                                     >  SRR4302536.1396290/1‑94 (MQ=60)

         GCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGC                                                                                     <  SRR4302536.585437/94‑1 (MQ=60)

           CACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGC                                                                                   >  SRR4302536.3544390/1‑94 (MQ=60)

             CGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCAT                                                                                 <  SRR4302536.4137262/94‑1 (MQ=60)

             CGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCAT                                                                                 >  SRR4302536.4944372/1‑94 (MQ=60)

              GGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATG                                                                                <  SRR4302536.6229554/94‑1 (MQ=60)

                AAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGAC                                                                              <  SRR4302536.1434627/94‑1 (MQ=60)

                AAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGAC                                                                              >  SRR4302536.1483024/1‑94 (MQ=60)

                 AATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACC                                                                             <  SRR4302536.5164561/94‑1 (MQ=60)

                 AATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACC                                                                             <  SRR4302536.3625018/94‑1 (MQ=60)

                 AATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACC                                                                             >  SRR4302536.2242854/1‑94 (MQ=60)

                 AATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACC                                                                             >  SRR4302536.5300965/1‑94 (MQ=60)

                  ATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCG                                                                            <  SRR4302536.3654961/94‑1 (MQ=60)

                  ATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCG                                                                            <  SRR4302536.698972/94‑1 (MQ=60)

                   TGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGG                                                                           <  SRR4302536.1738844/94‑1 (MQ=60)

                   TGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGG                                                                           >  SRR4302536.1014040/1‑94 (MQ=60)

                    GATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGG                                                                          <  SRR4302536.988197/94‑1 (MQ=60)

                     ATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGT                                                                         >  SRR4302536.1201368/1‑94 (MQ=60)

                      TGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTT                                                                        >  SRR4302536.2320596/1‑94 (MQ=60)

                      TGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTT                                                                        <  SRR4302536.4226263/94‑1 (MQ=60)

                      TGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTT                                                                        <  SRR4302536.5333590/94‑1 (MQ=60)

                       GGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTC                                                                       <  SRR4302536.5322628/94‑1 (MQ=60)

                        GGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCG                                                                      <  SRR4302536.6628245/94‑1 (MQ=60)

                        GGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCG                                                                      <  SRR4302536.2179404/94‑1 (MQ=60)

                        GGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCG                                                                      >  SRR4302536.866871/1‑94 (MQ=60)

                         GAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGG                                                                     >  SRR4302536.4096919/1‑94 (MQ=60)

                         GAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGG                                                                     >  SRR4302536.6134688/1‑94 (MQ=60)

                          AGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGC                                                                    >  SRR4302536.634167/1‑94 (MQ=60)

                           GATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCA                                                                   <  SRR4302536.836437/94‑1 (MQ=60)

                           GATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCACATGACCGGGTTCGGCA                                                                   >  SRR4302536.5862417/1‑94 (MQ=60)

                            ATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATTGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCAT                                                                  >  SRR4302536.233863/1‑94 (MQ=60)

                             TTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATG                                                                 <  SRR4302536.5142002/94‑1 (MQ=60)

                               TCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAG                                                               <  SRR4302536.3475086/94‑1 (MQ=60)

                               TCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGGTCGGCATGAG                                                               >  SRR4302536.2242776/1‑94 (MQ=60)

                                CACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGT                                                              >  SRR4302536.5042449/1‑94 (MQ=60)

                                CACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGT                                                              >  SRR4302536.3033054/1‑94 (MQ=60)

                                CACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGT                                                              >  SRR4302536.4699589/1‑94 (MQ=60)

                                 ACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTC                                                             <  SRR4302536.3142583/94‑1 (MQ=60)

                                 ACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTC                                                             <  SRR4302536.6487768/94‑1 (MQ=60)

                                 ACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTC                                                             <  SRR4302536.2549273/94‑1 (MQ=60)

                                  CTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCA                                                            >  SRR4302536.4558472/1‑94 (MQ=60)

                                  CTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCA                                                            >  SRR4302536.4602350/1‑94 (MQ=60)

                                  CTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCA                                                            >  SRR4302536.3652176/1‑94 (MQ=60)

                                  CTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCA                                                            <  SRR4302536.302106/94‑1 (MQ=60)

                                   TTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCAC                                                           <  SRR4302536.6149342/94‑1 (MQ=60)

                                   TTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCAC                                                           >  SRR4302536.4618084/1‑94 (MQ=60)

                                     AACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACAC                                                         <  SRR4302536.6145075/94‑1 (MQ=60)

                                      ACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACC                                                        <  SRR4302536.2426321/94‑1 (MQ=60)

                                       CCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCG                                                       >  SRR4302536.327027/1‑94 (MQ=60)

                                         AGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTA                                                     >  SRR4302536.6839036/1‑94 (MQ=60)

                                         AGAGCATCGCGATACGTTAAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTA                                                     >  SRR4302536.4810587/1‑94 (MQ=60)

                                           AGCATCGCGTTACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATT                                                   >  SRR4302536.6727998/1‑94 (MQ=60)

                                           AGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATT                                                   >  SRR4302536.4071926/1‑94 (MQ=60)

                                           AGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATT                                                   <  SRR4302536.6492266/94‑1 (MQ=60)

                                           AGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATT                                                   <  SRR4302536.3239266/94‑1 (MQ=60)

                                            GCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTG                                                  <  SRR4302536.6376807/94‑1 (MQ=60)

                                             CATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATATCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGC                                                 >  SRR4302536.5449043/1‑94 (MQ=60)

                                             CATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGC                                                 >  SRR4302536.5921246/1‑94 (MQ=60)

                                             CATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGC                                                 >  SRR4302536.4542512/1‑94 (MQ=60)

                                             CATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGC                                                 >  SRR4302536.1865349/1‑94 (MQ=60)

                                             CATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGGTCGGCATGAGTCACAACGTATTGC                                                 >  SRR4302536.2523962/1‑94 (MQ=60)

                                              ATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCG                                                <  SRR4302536.3822785/94‑1 (MQ=60)

                                              ATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCG                                                <  SRR4302536.4553523/94‑1 (MQ=60)

                                                CGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCC                                              >  SRR4302536.4569533/1‑94 (MQ=60)

                                                  CGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAG                                            >  SRR4302536.1574753/1‑94 (MQ=60)

                                                   GATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGT                                           >  SRR4302536.3523964/1‑94 (MQ=60)

                                                   GATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGT                                           >  SRR4302536.4732732/1‑94 (MQ=60)

                                                   GATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGT                                           >  SRR4302536.363661/1‑94 (MQ=60)

                                                   GATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGT                                           >  SRR4302536.3965600/1‑94 (MQ=60)

                                                    ATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTA                                          >  SRR4302536.3342450/1‑94 (MQ=60)

                                                     TACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAA                                         <  SRR4302536.1249935/94‑1 (MQ=60)

                                                      acgttccggcttgtccccctgcctggTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAAT                                        <  SRR4302536.199720/68‑1 (MQ=60)

                                                      ACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAAT                                        <  SRR4302536.1106499/94‑1 (MQ=60)

                                                      ACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAAT                                        >  SRR4302536.2511222/1‑94 (MQ=60)

                                                      ACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAAT                                        <  SRR4302536.2705865/94‑1 (MQ=60)

                                                       CGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATG                                       <  SRR4302536.2626926/94‑1 (MQ=60)

                                                       CGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATG                                       >  SRR4302536.1440226/1‑94 (MQ=60)

                                                       CGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATG                                       >  SRR4302536.2642187/1‑94 (MQ=60)

                                                        GTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGG                                      >  SRR4302536.1975233/1‑94 (MQ=60)

                                                         TTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGC                                     <  SRR4302536.4357200/94‑1 (MQ=60)

                                                         TTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGC                                     <  SRR4302536.2948699/94‑1 (MQ=60)

                                                          TCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCA                                    >  SRR4302536.3037507/1‑94 (MQ=60)

                                                              GCTGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGA                                <  SRR4302536.56604/94‑1 (MQ=60)

                                                                TGATCGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAG                              <  SRR4302536.594583/94‑1 (MQ=60)

                                                                    CGCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCA                          <  SRR4302536.4611040/94‑1 (MQ=60)

                                                                     GCCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAG                         >  SRR4302536.4569384/1‑94 (MQ=60)

                                                                     GCACTGCTGGTTTGACGGCATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAG                         <  SRR4302536.2208460/94‑1 (MQ=60)

                                                                      CCCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGC                        >  SRR4302536.5085028/1‑94 (MQ=60)

                                                                       CCTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCT                       <  SRR4302536.4383938/94‑1 (MQ=60)

                                                                        CTGCTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTG                      >  SRR4302536.5344346/1‑94 (MQ=60)

                                                                           CTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTC                   <  SRR4302536.2602938/94‑1 (MQ=60)

                                                                           CTGGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTC                   <  SRR4302536.3622093/94‑1 (MQ=60)

                                                                             GGTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGC                 <  SRR4302536.3032470/94‑1 (MQ=60)

                                                                              GTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCT                >  SRR4302536.4688943/1‑94 (MQ=60)

                                                                              GTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCT                >  SRR4302536.4362715/1‑94 (MQ=60)

                                                                              GTTTGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCT                <  SRR4302536.246315/94‑1 (MQ=60)

                                                                                 TGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAA             >  SRR4302536.4634342/1‑94 (MQ=60)

                                                                                 TGCCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAA             <  SRR4302536.6552276/94‑1 (MQ=60)

                                                                                   CCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGG           <  SRR4302536.4464814/94‑1 (MQ=60)

                                                                                   CCGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGG           <  SRR4302536.3670137/94‑1 (MQ=60)

                                                                                    CGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGC          >  SRR4302536.787555/1‑94 (MQ=60)

                                                                                    CGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGC          >  SRR4302536.497074/1‑94 (MQ=60)

                                                                                    CGGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGC          <  SRR4302536.443578/94‑1 (MQ=60)

                                                                                     GGAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCG         <  SRR4302536.911608/94‑1 (MQ=60)

                                                                                      GAATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGC        <  SRR4302536.4769204/94‑1 (MQ=60)

                                                                                       AATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCG       >  SRR4302536.206004/1‑94 (MQ=60)

                                                                                       AATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCG       <  SRR4302536.500934/94‑1 (MQ=60)

                                                                                        ATAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGT      >  SRR4302536.5388392/1‑94 (MQ=60)

                                                                                         TAGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGTT     <  SRR4302536.1853229/94‑1 (MQ=60)

                                                                                          AGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGTTC    <  SRR4302536.1659126/94‑1 (MQ=60)

                                                                                          AGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGTTC    >  SRR4302536.6029392/1‑94 (MQ=60)

                                                                                          AGCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGTTC    >  SRR4302536.792317/1‑94 (MQ=60)

                                                                                           GCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGTTCA   <  SRR4302536.5699156/94‑1 (MQ=60)

                                                                                           GCGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGTTCA   <  SRR4302536.1875237/94‑1 (MQ=60)

                                                                                            CGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGTTCAG  <  SRR4302536.6796652/94‑1 (MQ=60)

GTAGCTGTCGCCACGGAAATGATGGGAGATTTCACTTAACCAGAGCATCGCGATACGTTCAGGCTGATCGCCCTGCTGGTTTGCCGGAATAGTGCCCGTCAGCGCATGACCGGGTTCGGCATGAGTCACACCGTATTGCGCCAGTAATGGCAGCGAAGTGCAGCTGGTCGCTGAAGGCGCGTTCAG  >  NC_000913/3507739‑3507924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`