Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,554,088	+C	coding (2/624 nt)	yhgKJ ←	RNA phosphage cyclase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,554,088	1	.	C	100.0%	705.7 / NA	220	S133W (TCG→TGG)	yhgKJ	RNA phosphage cyclase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (119/101); total (119/101)

Only 100 of 239 total aligned reads displayed.

GGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CG‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT  >  NC_000913/3553997‑3554174

 gCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑Cgca                                                                                        <  1:476150/93‑3 (MQ=255)

     ggTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAggcg                                                                                    <  2:2891196/93‑1 (MQ=255)

      gTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAggcgg                                                                                   <  2:1643803/93‑1 (MQ=255)

       tAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAggcggc                                                                                  >  2:5259769/1‑93 (MQ=255)

       tAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAggcggc                                                                                  <  2:2610462/93‑1 (MQ=255)

       tAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAggcggc                                                                                  <  2:2758271/93‑1 (MQ=255)

        aaaaaCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGgcggcg                                                                                 >  2:3553539/1‑93 (MQ=255)

         aaaaCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGgcgc                                                                                <  2:3243161/93‑1 (MQ=255)

         aaaaCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGgcgc                                                                                >  1:923809/1‑93 (MQ=255)

         aaaaCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGgcgc                                                                                <  1:3706881/93‑1 (MQ=255)

         aaaaCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTACTATTTTCGCCAGCAGCGGCTCCAGCACCCAGCGGATAAAATC‑CGCAGGCGgcgc                                                                                >  1:2038302/1‑93 (MQ=255)

            aCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCgc                                                                             >  2:1983036/1‑92 (MQ=255)

            aCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGa                                                                             >  2:2681335/1‑93 (MQ=255)

            aCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGa                                                                             >  2:2489279/1‑93 (MQ=255)

             ccGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGAc                                                                            <  2:5579086/93‑1 (MQ=255)

               gTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACgg                                                                          >  2:3259467/1‑93 (MQ=255)

               gTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACgg                                                                          >  1:5817563/1‑93 (MQ=255)

                tGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACggg                                                                         >  2:3477576/1‑93 (MQ=255)

                 ggCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGt                                                                        >  2:1441727/1‑93 (MQ=255)

                  gCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGtt                                                                       <  2:5360943/93‑1 (MQ=255)

                  gCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGtt                                                                       <  1:2751197/93‑1 (MQ=255)

                   cGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGttt                                                                      >  1:5147281/1‑92 (MQ=255)

                   cGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCAACGGGTTa                                                                      <  1:6518325/93‑1 (MQ=255)

                    gTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTAt                                                                     <  2:2972273/93‑1 (MQ=255)

                    gTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGGTAt                                                                     >  1:349620/1‑93 (MQ=255)

                    gTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAAGCGGCGCCGACGGGTTAt                                                                     >  1:6674027/1‑93 (MQ=255)

                    ctAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTAt                                                                     <  1:3267901/92‑1 (MQ=255)

                     tAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATc                                                                    <  2:3446892/93‑1 (MQ=255)

                     tAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATc                                                                    <  1:5597910/93‑1 (MQ=255)

                      agcAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGGTATCg                                                                   >  1:5312610/3‑93 (MQ=255)

                      aaCAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCg                                                                   >  2:2432798/1‑93 (MQ=255)

                       aCAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCTGCGGATAAAATC‑CGCAGGCGGCGCCGACCGGTTATCgg                                                                  >  2:397013/1‑93 (MQ=255)

                         aGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGtg                                                                >  2:5842539/1‑92 (MQ=255)

                         aGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGtg                                                                <  1:5984011/93‑2 (MQ=255)

                          gCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGtgc                                                               <  2:5498561/93‑3 (MQ=255)

                          gCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATA‑CGCAGGCGGCGCCGACGGGTTATCGGtgc                                                               >  1:4865348/1‑91 (MQ=255)

                            gTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGtgccg                                                             >  1:3233908/1‑89 (MQ=255)

                             ttgTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑c                                                          <  1:1886217/91‑1 (MQ=255)

                             tGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑c                                                          >  1:1184793/1‑93 (MQ=255)

                             tGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑c                                                          <  2:4663685/93‑1 (MQ=255)

                              ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑cc                                                         <  1:634892/93‑2 (MQ=255)

                                tttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgc                                                       <  2:2087357/93‑4 (MQ=255)

                                   gCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCa                                                     <  2:3648075/93‑1 (MQ=255)

                                    cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAc                                                    >  1:2875726/1‑93 (MQ=255)

                                      gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACtt                                                  >  1:1456706/1‑93 (MQ=255)

                                        tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCa                                                >  1:1438275/1‑93 (MQ=255)

                                         gaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCaa                                               >  2:6104735/1‑93 (MQ=255)

                                           aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca                                             >  2:1523296/1‑93 (MQ=255)

                                            ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAacac                                            >  2:5004053/1‑93 (MQ=255)

                                              ccTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgc                                          <  2:6510905/93‑1 (MQ=255)

                                               cTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgcg                                         >  1:2171326/1‑93 (MQ=255)

                                               cTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgcg                                         >  1:3142799/1‑93 (MQ=255)

                                               cTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgcg                                         >  1:5036827/1‑93 (MQ=255)

                                               cTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgcg                                         <  1:5884196/93‑1 (MQ=255)

                                                 aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGACGCTCACTTCATCACGCGaa                                       <  1:6567894/93‑1 (MQ=255)

                                                   tttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAgg                                     <  1:6119632/93‑1 (MQ=255)

                                                    ttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGt                                    <  2:1313045/93‑1 (MQ=255)

                                                     tCGCCAGCAGCGCCGCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTTAACACGCGAAGGTc                                   <  1:4064809/93‑1 (MQ=255)

                                                       gCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCa                                 <  1:4254765/93‑1 (MQ=255)

                                                          agcagcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCg                              >  2:6269557/1‑93 (MQ=255)

                                                          agcagcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGCTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCCTCg                              >  1:2230111/1‑93 (MQ=255)

                                                           gcagcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCgg                             >  2:4557130/1‑93 (MQ=255)

                                                           gcagcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCgg                             >  1:5257897/1‑93 (MQ=255)

                                                           gcagcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGG‑CGCCGCCGCTCACCTCAACACGCGAAGGTCCATCgg                             >  2:2572462/1‑93 (MQ=255)

                                                            cagcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGc                            <  2:5096698/93‑1 (MQ=255)

                                                            cagcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGc                            >  2:4190803/1‑93 (MQ=255)

                                                            cagcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGc                            >  2:4428300/1‑93 (MQ=255)

                                                              gcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaa                          >  1:3386405/1‑93 (MQ=255)

                                                              gcGGCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCaa                          >  1:4402191/1‑93 (MQ=255)

                                                                ggCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAc                        >  1:6224836/1‑93 (MQ=255)

                                                                 gCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc                       >  2:3133858/1‑93 (MQ=255)

                                                                 gCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc                       <  2:6706/93‑1 (MQ=255)

                                                                 gCTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGGCCATCGGCAAAcc                       >  1:228725/1‑93 (MQ=255)

                                                                  cTCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACca                      >  1:1619799/1‑93 (MQ=255)

                                                                   tCCAGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcac                     >  1:5183524/1‑93 (MQ=255)

                                                                    ctaGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGTTCCATCGGCAAACcaca                    <  1:2374253/91‑1 (MQ=255)

                                                                      aGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc                  >  2:929899/1‑93 (MQ=255)

                                                                      aGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc                  >  1:6454007/1‑93 (MQ=255)

                                                                      aGCACCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgc                  <  2:2349757/93‑1 (MQ=255)

                                                                         aCCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg               >  2:3888818/1‑93 (MQ=255)

                                                                         aCCCGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg               >  2:4937950/1‑93 (MQ=255)

                                                                          cccGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCgg              >  2:1215372/1‑93 (MQ=255)

                                                                          cccGGCGGATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCgg              >  1:696881/1‑93 (MQ=255)

                                                                            cggcggATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc            >  1:3981924/1‑93 (MQ=255)

                                                                            cggcggATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc            <  1:3649741/93‑1 (MQ=255)

                                                                             ggcggAGAAAAGC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgca           <  1:2423795/93‑1 (MQ=255)

                                                                             cgcggATAAAATCGAC‑AGGCGCGGCGGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgca           <  1:4351551/92‑1 (MQ=255)

                                                                                ggATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagca        >  2:5610986/1‑93 (MQ=255)

                                                                                 gATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc       >  2:4785525/1‑93 (MQ=255)

                                                                                 gATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc       >  2:3850952/1‑93 (MQ=255)

                                                                                 gATAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc       <  1:5533053/93‑1 (MQ=255)

                                                                                  aTAAAATC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAcc      >  1:1244931/1‑93 (MQ=255)

                                                                                    aaaaTC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt    >  2:3739162/1‑93 (MQ=255)

                                                                                     aaaTC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCACCACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt   <  2:771253/93‑1 (MQ=255)

                                                                                     aaaTC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGTGCGGGCAGCACCGtt   >  2:3816963/1‑93 (MQ=255)

                                                                                     aaaTC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt   >  2:3927438/1‑93 (MQ=255)

                                                                                     aaaTC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt   <  1:2136774/93‑1 (MQ=255)

                                                                                     aaaTC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt   <  1:3870242/93‑1 (MQ=255)

                                                                                     aaaTC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt   <  2:1572357/93‑1 (MQ=255)

                                                                                      aaTC‑CGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGttt  >  1:1102627/1‑93 (MQ=255)

GGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC‑CG‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT  >  NC_000913/3553997‑3554174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAG  >  NC_000913/3553997‑3554178

GGCAGGTTAACAACCGTTGCGTAACTGCGTTGTTTGCTGATGAATTCCTATTTTCGCTAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGca                                                                                              <  SRR4302536.6870321/94‑3 (MQ=60)

 GCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGcag                                                                                             <  SRR4302536.488540/94‑4 (MQ=60)

 GCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGcag                                                                                             <  SRR4302536.2019026/94‑4 (MQ=60)

   AGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGC                                                                                           >  SRR4302536.5427283/1‑94 (MQ=60)

    GCGTAAAACCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCG                                                                                          <  SRR4302536.753394/94‑1 (MQ=60)

     GGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGG                                                                                         >  SRR4302536.4054392/1‑94 (MQ=60)

       TAAAAGCCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCG                                                                                       <  SRR4302536.2492080/94‑1 (MQ=60)

       TAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCG                                                                                       <  SRR4302536.3256545/94‑1 (MQ=60)

        AAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGC                                                                                      >  SRR4302536.951027/1‑94 (MQ=60)

        AAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTACTATTTTCGCCAGCAGCGGCTCCAGCACCCAGCGGATAAAATCCGCAGGCGGCGC                                                                                      >  SRR4302536.2099696/1‑94 (MQ=60)

         AAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCC                                                                                     <  SRR4302536.3817704/94‑1 (MQ=60)

         AAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCC                                                                                     >  SRR4302536.2352270/1‑94 (MQ=60)

         AAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATGTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCC                                                                                     <  SRR4302536.1607576/94‑1 (MQ=60)

          AAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCG                                                                                    >  SRR4302536.5743115/1‑94 (MQ=60)

           AACCGTGGCGTAACAGTGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGA                                                                                   <  SRR4302536.3731819/94‑1 (MQ=60)

              CGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGG                                                                                >  SRR4302536.6203797/1‑94 (MQ=60)

              CGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGG                                                                                >  SRR4302536.5990859/1‑94 (MQ=60)

               GTGTCGTAACAGCGAAGTTTGCTGATGAATTCCTATATTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGG                                                                               <  SRR4302536.1914180/94‑1 (MQ=60)

               GTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGG                                                                               <  SRR4302536.3359201/94‑1 (MQ=60)

                TGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAGGCGGCGCCGAacggt                                                                              >  SRR4302536.496462/1‑89 (MQ=60)

                  GCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTT                                                                            >  SRR4302536.5300881/1‑94 (MQ=60)

                  GCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTA                                                                            <  SRR4302536.2833100/94‑1 (MQ=60)

                   CGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTAT                                                                           <  SRR4302536.899570/94‑1 (MQ=60)

                   CGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTAT                                                                           <  SRR4302536.3216421/94‑1 (MQ=60)

                   CGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTAT                                                                           >  SRR4302536.358886/1‑94 (MQ=60)

                   CGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCAACGGGTTAT                                                                           <  SRR4302536.6712518/94‑1 (MQ=60)

                   CGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAAGCGGCGCCGACGGGTTAT                                                                           >  SRR4302536.6872332/1‑94 (MQ=60)

                    GTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATC                                                                          <  SRR4302536.2164362/94‑1 (MQ=60)

                    GTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATC                                                                          >  SRR4302536.4930892/1‑94 (MQ=60)

                    CTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATC                                                                          <  SRR4302536.3363833/94‑1 (MQ=60)

                     TAGCAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCG                                                                         >  SRR4302536.5471242/1‑94 (MQ=60)

                     TAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCG                                                                         <  SRR4302536.2197046/94‑1 (MQ=60)

                     TAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCG                                                                         <  SRR4302536.5764317/94‑1 (MQ=60)

                      AACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGG                                                                        >  SRR4302536.3205705/1‑94 (MQ=60)

                       ACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGG                                                                       >  SRR4302536.654313/1‑94 (MQ=60)

                         AGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTgc                                                                     >  SRR4302536.514206/1‑92 (MQ=60)

                         AGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTgc                                                                     <  SRR4302536.6162430/94‑3 (MQ=60)

                         AGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATACGCAGGCGGCGCCGACGGGTTATCGGTgc                                                                     >  SRR4302536.5011763/1‑92 (MQ=60)

                          GCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC                                                                 <  SRR4302536.1730600/94‑1 (MQ=60)

                          GCGTGGTTGGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCC                                                                 <  SRR4302536.1482548/94‑1 (MQ=60)

                           GGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTgcca                                                                   <  SRR4302536.1686301/94‑5 (MQ=60)

                           CGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCG                                                                >  SRR4302536.3328706/1‑94 (MQ=60)

                            GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCG‑C                                                              >  SRR4302536.1220451/1‑94 (MQ=60)

                            GTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCG‑C                                                              >  SRR4302536.6037857/1‑94 (MQ=60)

                             TTGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCC                                                                 <  SRR4302536.1942947/94‑1 (MQ=60)

                              GGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTGCCGCCG                                                                <  SRR4302536.653659/94‑1 (MQ=60)

                                   GCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCAC                                                        >  SRR4302536.2960625/1‑94 (MQ=60)

                                    CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACT                                                       >  SRR4302536.5129256/1‑94 (MQ=60)

                                    CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACT                                                       >  SRR4302536.4078323/1‑94 (MQ=60)

                                    CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAGGCGGCGGCGACGGGCTATCGG‑‑‑CGCCGCCGCTCACT                                                       >  SRR4302536.596935/1‑94 (MQ=60)

                                     TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTT                                                      <  SRR4302536.2383691/94‑1 (MQ=60)

                                     TGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTT                                                      >  SRR4302536.1499841/1‑94 (MQ=60)

                                      GATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTgccgccgctcgcgta                                                        >  SRR4302536.1278186/1‑79 (MQ=60)

                                      GATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTC                                                     <  SRR4302536.604970/94‑1 (MQ=60)

                                       ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCA                                                    >  SRR4302536.1480928/1‑94 (MQ=60)

                                       ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCA                                                    <  SRR4302536.5257415/94‑1 (MQ=60)

                                         GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAAC                                                  <  SRR4302536.2558827/94‑1 (MQ=60)

                                         GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAAC                                                  <  SRR4302536.6765739/94‑1 (MQ=60)

                                          AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCCACA                                                 >  SRR4302536.2234004/1‑94 (MQ=60)

                                            TTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACG                                               <  SRR4302536.3664387/94‑1 (MQ=60)

                                            TTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACG                                               >  SRR4302536.5319052/1‑94 (MQ=60)

                                              CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCG                                             >  SRR4302536.6390060/1‑94 (MQ=60)

                                              CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCG                                             >  SRR4302536.2236710/1‑94 (MQ=60)

                                              CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCG                                             <  SRR4302536.2288617/94‑1 (MQ=60)

                                              CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCG                                             >  SRR4302536.5187813/1‑94 (MQ=60)

                                              CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCG                                             >  SRR4302536.3234814/1‑94 (MQ=60)

                                               CTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGA                                            <  SRR4302536.6059467/94‑1 (MQ=60)

                                               CTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGA                                            >  SRR4302536.1167798/1‑94 (MQ=60)

                                                 ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAG                                          <  SRR4302536.478678/94‑1 (MQ=60)

                                                 ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAG                                          <  SRR4302536.6474293/94‑1 (MQ=60)

                                                 ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGACGCTCACTTCATCACGCGAAG                                          <  SRR4302536.6763367/94‑1 (MQ=60)

                                                  TTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGG                                         >  SRR4302536.6585322/1‑94 (MQ=60)

                                                   TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGT                                        <  SRR4302536.6302027/94‑1 (MQ=60)

                                                     TCGCCAGCAGCGCCGCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTTAACACGCGAAGGTCC                                      <  SRR4302536.4185284/94‑1 (MQ=60)

                                                       GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT                                    <  SRR4302536.4381522/94‑1 (MQ=60)

                                                       GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT                                    <  SRR4302536.3587390/94‑1 (MQ=60)

                                                        CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC                                   >  SRR4302536.447576/1‑94 (MQ=60)

                                                        CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC                                   >  SRR4302536.4734166/1‑94 (MQ=60)

                                                         CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCG                                  <  SRR4302536.6703706/94‑1 (MQ=60)

                                                         CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGCTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCCTCG                                  >  SRR4302536.2297563/1‑94 (MQ=60)

                                                          AGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGG                                 >  SRR4302536.5414586/1‑94 (MQ=60)

                                                           GCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGC                                <  SRR4302536.5794804/94‑1 (MQ=60)

                                                             AGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAA                              >  SRR4302536.4533803/1‑94 (MQ=60)

                                                             AGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAA                              >  SRR4302536.42216/1‑94 (MQ=60)

                                                             AGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAA                              <  SRR4302536.5552836/94‑1 (MQ=60)

                                                             AGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAA                              >  SRR4302536.3487067/1‑94 (MQ=60)

                                                               CGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAC                            >  SRR4302536.6410307/1‑94 (MQ=60)

                                                                GGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACA                           >  SRR4302536.1259967/1‑94 (MQ=60)

                                                                GGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGGCCATCGGCAAACC                           >  SRR4302536.234811/1‑94 (MQ=60)

                                                                 GCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCA                          >  SRR4302536.1666980/1‑94 (MQ=60)

                                                                 GCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTAACGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCA                          >  SRR4302536.5549976/1‑94 (MQ=60)

                                                                  CTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC                         >  SRR4302536.3341311/1‑94 (MQ=60)

                                                                  CTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC                         <  SRR4302536.1333890/94‑1 (MQ=60)

                                                                  CTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC                         <  SRR4302536.3484280/94‑1 (MQ=60)

                                                                  CTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAC                         >  SRR4302536.5338131/1‑94 (MQ=60)

                                                                   CCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACA                        <  SRR4302536.5352655/94‑1 (MQ=60)

                                                                    CTAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGTTCCATCGGCAAACCACAG                       <  SRR4302536.2446178/94‑1 (MQ=60)

                                                                    CCAGCACCCGGCGCATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑CCCGC‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAG                       <  SRR4302536.6740789/94‑1 (MQ=60)

                                                                     CAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC                      >  SRR4302536.6646755/1‑94 (MQ=60)

                                                                      AGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG                     <  SRR4302536.1343609/94‑1 (MQ=60)

                                                                        CACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG                   >  SRR4302536.4476229/1‑94 (MQ=60)

                                                                        CACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGAG                   >  SRR4302536.247118/1‑94 (MQ=60)

                                                                         ACCCGGCGGATAAAATCCGCAGGCGGCGCGGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGG                  <  SRR4302536.2948090/94‑1 (MQ=60)

                                                                         ACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGG                  >  SRR4302536.717237/1‑94 (MQ=60)

                                                                         ACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGG                  >  SRR4302536.3848123/1‑94 (MQ=60)

                                                                           CCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGC                <  SRR4302536.8952/94‑1 (MQ=60)

                                                                           CCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGC                >  SRR4302536.4100125/1‑94 (MQ=60)

                                                                            CGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCA               <  SRR4302536.3758859/94‑1 (MQ=60)

                                                                             GGCGGAGAAAAGCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAG              <  SRR4302536.2497075/94‑1 (MQ=60)

                                                                              GCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGC             >  SRR4302536.704631/1‑94 (MQ=60)

                                                                               CGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCA            >  SRR4302536.3775289/1‑94 (MQ=60)

                                                                               CGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCA            >  SRR4302536.5469120/1‑94 (MQ=60)

                                                                                GGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC           <  SRR4302536.5386276/94‑1 (MQ=60)

                                                                                 GATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC          >  SRR4302536.4152820/1‑94 (MQ=60)

                                                                                 GATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC          <  SRR4302536.2301047/94‑1 (MQ=60)

                                                                                 GATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC          >  SRR4302536.1282310/1‑94 (MQ=60)

                                                                                 GATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC          <  SRR4302536.5697988/94‑1 (MQ=60)

                                                                                 GATAAAATCCGCAGGCGGCGCCGACGGGATATCGGT‑‑‑GCCGCCGCTCACTTCAATACGCGAAGGTCCATCGGAAAACCACAGCGCGGGCAGCCCC          >  SRR4302536.2198946/1‑94 (MQ=60)

                                                                                 GAGAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACC          <  SRR4302536.6395332/94‑1 (MQ=60)

                                                                                     AAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT      <  SRR4302536.3985370/94‑1 (MQ=60)

                                                                                     AAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT      <  SRR4302536.2200896/94‑1 (MQ=60)

                                                                                     AAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT      >  SRR4302536.1135727/1‑94 (MQ=60)

                                                                                       ATCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGC    >  SRR4302536.1855115/1‑94 (MQ=60)

                                                                                        TCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCA   >  SRR4302536.4588679/1‑94 (MQ=60)

                                                                                        TCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCA   >  SRR4302536.1358164/1‑94 (MQ=60)

                                                                                        TCCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCA   <  SRR4302536.2712017/94‑1 (MQ=60)

                                                                                         CCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAG  <  SRR4302536.3926049/94‑1 (MQ=60)

                                                                                         CCGCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAG  <  SRR4302536.23968/94‑1 (MQ=60)

GGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAG  >  NC_000913/3553997‑3554178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`