Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,152,979	G→A	G134S (GGT→AGT)	argC →	N‑acetyl‑gamma‑glutamylphosphate reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,152,979	0	G	A	100.0%	1043.2 / NA	277	G134S (GGT→AGT)	argC	N‑acetyl‑gamma‑glutamylphosphate reductase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (139/138); total (139/138)

Only 100 of 282 total aligned reads displayed.

GCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTG  >  NC_000913/4152890‑4153068

gcgcGTTTCGTGTTAACGACGCCACCTGCTATGAAAAATATTACGGCTCTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTc                                                                                        <  2:47372/93‑1 (MQ=255)

 cgcgTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCt                                                                                       >  1:5808340/1‑93 (MQ=255)

 cgcgTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCt                                                                                       <  2:1540736/93‑1 (MQ=255)

  gcgTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTg                                                                                      >  2:4924419/1‑93 (MQ=255)

  gcgTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTg                                                                                      >  2:4477236/1‑93 (MQ=255)

   cgTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTgg                                                                                     <  1:3295210/93‑1 (MQ=255)

    gTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGc                                                                                    >  1:6729710/1‑93 (MQ=255)

       tCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGa                                                                                 <  1:2811290/93‑1 (MQ=255)

         gtgtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgt                                                                               <  1:1408826/93‑1 (MQ=255)

         gtgtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgg                                                                               >  2:6070195/1‑92 (MQ=255)

          tgtTAACTACGCCTCCTTCTATGAAAAATATTACGGCTTTACCCATCAATTCCCGGAACTGTTGGAACAGTCAGCCTACAGTCTGGCGGAgtg                                                                              <  1:4600917/93‑1 (MQ=255)

           gtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTGCAGTCTGGCGGAgtgg                                                                             <  2:3685429/93‑1 (MQ=255)

           gtTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGGgtgg                                                                             >  2:273794/1‑93 (MQ=255)

            ttAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACTCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtggt                                                                            >  1:1105629/1‑93 (MQ=255)

            ttAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtggt                                                                            >  1:3076902/1‑93 (MQ=255)

            ttAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtggt                                                                            <  2:768960/93‑1 (MQ=255)

            ttAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtggg                                                                            >  2:400567/1‑92 (MQ=255)

             tAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtggtg                                                                           <  1:4791534/93‑1 (MQ=255)

             tAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtggtg                                                                           <  2:619105/93‑1 (MQ=255)

             tAAAGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAgtggtg                                                                           <  2:6508626/93‑1 (MQ=255)

              aaCGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCTATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGc                                                                          <  2:3809162/93‑1 (MQ=255)

              aaCGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGc                                                                          <  1:3707548/93‑1 (MQ=255)

              aaCGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGc                                                                          >  1:3163818/1‑93 (MQ=255)

              aaCGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGc                                                                          <  1:6086512/93‑1 (MQ=255)

                 gacgCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGt                                                                       <  2:1058688/93‑1 (MQ=255)

                 gacgCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGt                                                                       >  1:1995690/1‑93 (MQ=255)

                   cgCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaa                                                                     <  2:2337779/93‑1 (MQ=255)

                   cgCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaa                                                                     <  1:4930674/93‑1 (MQ=255)

                     ccACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaata                                                                   <  2:2218248/93‑1 (MQ=255)

                     ccACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaata                                                                   >  2:4436452/1‑93 (MQ=255)

                      cACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCTGAGTGGTGCGGtaataa                                                                  <  1:4571844/93‑1 (MQ=255)

                      cACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGtaataa                                                                  <  2:5320769/93‑1 (MQ=255)

                       aCCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATaaa                                                                 <  2:6628183/93‑1 (MQ=255)

                        ccTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAAt                                                                >  1:1324825/1‑93 (MQ=255)

                        ccTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAAt                                                                >  2:1120190/1‑93 (MQ=255)

                         cTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAAtt                                                               >  2:5552174/1‑93 (MQ=255)

                          ttCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTa                                                              >  1:3431081/1‑93 (MQ=255)

                          ttCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTa                                                              <  1:1019753/93‑1 (MQ=255)

                          ttCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTa                                                              >  2:3458405/1‑93 (MQ=255)

                          ttCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTa                                                              >  2:308843/1‑93 (MQ=255)

                            cTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTaaa                                                            >  2:2820283/1‑93 (MQ=255)

                             tATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTaaaa                                                           <  1:224681/93‑1 (MQ=255)

                              aTGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAaag                                                          >  2:2055359/1‑93 (MQ=255)

                              aTGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAaag                                                          <  1:5083571/93‑1 (MQ=255)

                              aTGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAaag                                                          >  2:1629470/1‑93 (MQ=255)

                               tGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGGAATAAATTAAaaga                                                         >  2:1931944/1‑93 (MQ=255)

                                gAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAaagaa                                                        >  2:3373005/1‑93 (MQ=255)

                                 aaaaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAaagaag                                                       >  1:2437544/1‑93 (MQ=255)

                                 aaaaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAaagaag                                                       <  1:1939365/93‑1 (MQ=255)

                                 aaaaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAaagaag                                                       <  1:1298707/93‑1 (MQ=255)

                                  aaaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGc                                                      <  2:3542047/93‑1 (MQ=255)

                                  aaaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGc                                                      >  2:2702490/1‑93 (MQ=255)

                                  aaaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGc                                                      >  1:5475163/1‑93 (MQ=255)

                                  aaaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGc                                                      >  2:6602757/1‑93 (MQ=255)

                                   aaaTATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCg                                                     <  2:5789514/93‑1 (MQ=255)

                                     atatTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGaa                                                   <  2:623945/93‑1 (MQ=255)

                                      tatTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAt                                                  >  2:1745796/1‑93 (MQ=255)

                                      tatTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAt                                                  >  2:2552806/1‑93 (MQ=255)

                                      tatTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAt                                                  <  2:3210807/93‑1 (MQ=255)

                                      tatTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAt                                                  >  1:6430651/1‑93 (MQ=255)

                                      tatTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCAACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAt                                                  <  2:6386545/93‑1 (MQ=255)

                                        ttACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAttt                                                >  1:1218105/1‑93 (MQ=255)

                                        ttACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAttt                                                <  1:5353465/93‑1 (MQ=255)

                                           cGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAt                                             <  2:5934003/93‑1 (MQ=255)

                                           cGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAt                                             <  1:80184/93‑1 (MQ=255)

                                           cGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAt                                             <  1:3839435/93‑1 (MQ=255)

                                            ggCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAtt                                            <  1:4088202/93‑1 (MQ=255)

                                              cTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGc                                          <  2:4056603/93‑1 (MQ=255)

                                               tttACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCg                                         >  1:5577427/1‑93 (MQ=255)

                                                  aCCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTg                                      >  1:986104/1‑93 (MQ=255)

                                                  aCCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTg                                      >  1:6133027/1‑93 (MQ=255)

                                                    ccATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGcc                                    <  2:5200367/93‑1 (MQ=255)

                                                      aTCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCgg                                  <  1:2965897/93‑1 (MQ=255)

                                                       tCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCggg                                 >  1:1514697/1‑93 (MQ=255)

                                                       tCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCggg                                 <  1:940813/93‑1 (MQ=255)

                                                       tCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCggg                                 >  2:2434310/1‑93 (MQ=255)

                                                       tCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCggg                                 <  2:5891634/93‑1 (MQ=255)

                                                        cAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGc                                <  1:2708160/93‑1 (MQ=255)

                                                         aaTACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCt                               <  2:3586274/93‑1 (MQ=255)

                                                           tACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGt                             <  2:5255438/93‑1 (MQ=255)

                                                              ccGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTAt                          >  2:4167892/1‑93 (MQ=255)

                                                                ggAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATcc                        <  1:1681335/93‑1 (MQ=255)

                                                                   aCTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCgca                     >  2:1238654/1‑91 (MQ=255)

                                                                   aCTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAc                     <  2:2008189/93‑1 (MQ=255)

                                                                   aCTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAc                     >  1:4171520/1‑93 (MQ=255)

                                                                     tGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAcgg                   >  1:4060690/1‑93 (MQ=255)

                                                                      gTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAcggc                  >  2:4645609/1‑93 (MQ=255)

                                                                      gTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAcggc                  >  1:5895477/1‑93 (MQ=255)

                                                                          gAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGca              >  2:6669908/1‑93 (MQ=255)

                                                                           aaCAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGcac             <  1:4495834/93‑1 (MQ=255)

                                                                              aGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGc          >  1:6660827/1‑93 (MQ=255)

                                                                               ggCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCt         <  2:5744617/93‑1 (MQ=255)

                                                                               ggCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCt         >  2:4868984/1‑93 (MQ=255)

                                                                               ggCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCt         <  1:2533032/93‑1 (MQ=255)

                                                                               ggCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCt         <  1:4378341/93‑1 (MQ=255)

                                                                                gCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTg        >  2:9538/1‑93 (MQ=255)

                                                                                gCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTg        <  2:1453956/93‑1 (MQ=255)

                                                                                  aGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGgc      <  2:880835/93‑1 (MQ=255)

                                                                                     cTACAGTCTGGCGGAGTGGTGCGGGAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAACTGgcgcg   >  1:5242778/1‑92 (MQ=255)

                                                                                      tACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTg  >  2:1356960/1‑93 (MQ=255)

GCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTG  >  NC_000913/4152890‑4153068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAA  >  NC_000913/4152886‑4153071

TCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACA                                                                                              <  SRR4302536.4814076/94‑1 (MQ=60)

 CCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAG                                                                                             <  SRR4302536.2493281/94‑1 (MQ=60)

 CCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAG                                                                                             <  SRR4302536.5196284/94‑1 (MQ=60)

   GGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTC                                                                                           >  SRR4302536.1987004/1‑94 (MQ=60)

    GCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCT                                                                                          >  SRR4302536.5981339/1‑94 (MQ=60)

     CGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTG                                                                                         >  SRR4302536.4884477/1‑94 (MQ=60)

       CGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGC                                                                                       <  SRR4302536.3392253/94‑1 (MQ=60)

       CGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGC                                                                                       >  SRR4302536.6929726/1‑94 (MQ=60)

       CGTTTCGTGATAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGC                                                                                       >  SRR4302536.3439840/1‑94 (MQ=60)

        GTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCG                                                                                      <  SRR4302536.2202328/94‑1 (MQ=60)

         TTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGG                                                                                     <  SRR4302536.5402280/94‑1 (MQ=60)

           TCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAG                                                                                   <  SRR4302536.2894619/94‑1 (MQ=60)

            CGTGTTAACGACGCCACCTTCTATGAAAACTATTACGGCTTTACCCATCAATCCCCGGAACTGTTGGAACAGGCACCCTACAGTCTGGCGGAGT                                                                                  <  SRR4302536.6519957/94‑1 (MQ=60)

            CGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGG                                                                                  >  SRR4302536.2126611/1‑94 (MQ=60)

            CGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGG                                                                                  >  SRR4302536.6378340/1‑94 (MQ=60)

             GTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTG                                                                                 <  SRR4302536.4732982/94‑1 (MQ=60)

             GTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTG                                                                                 >  SRR4302536.161574/1‑94 (MQ=60)

             GTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTG                                                                                 <  SRR4302536.1450729/94‑1 (MQ=60)

             GTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTG                                                                                 >  SRR4302536.2924371/1‑94 (MQ=60)

              TGTTAACTACGCCTCCTTCTATGAAAAATATTACGGCTTTACCCATCAATTCCCGGAACTGTTGGAACAGTCAGCCTACAGTCTGGCGGAGTGG                                                                                <  SRR4302536.4739092/94‑1 (MQ=60)

               GTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACTCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGT                                                                               >  SRR4302536.1138804/1‑94 (MQ=60)

               GTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGT                                                                               >  SRR4302536.3166999/1‑94 (MQ=60)

               GTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCACCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGG                                                                               >  SRR4302536.1439402/1‑94 (MQ=60)

                TTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTG                                                                              <  SRR4302536.2834787/94‑1 (MQ=60)

                 TAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGC                                                                             <  SRR4302536.4935772/94‑1 (MQ=60)

                 TAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGC                                                                             >  SRR4302536.3256498/1‑94 (MQ=60)

                  AACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCG                                                                            <  SRR4302536.3818386/94‑1 (MQ=60)

                  AACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCG                                                                            >  SRR4302536.2469034/1‑94 (MQ=60)

                  AACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCG                                                                            <  SRR4302536.6268061/94‑1 (MQ=60)

                   ACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGG                                                                           <  SRR4302536.133388/94‑1 (MQ=60)

                    CGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGT                                                                          >  SRR4302536.2055737/1‑94 (MQ=60)

                     GACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTA                                                                         <  SRR4302536.1069652/94‑1 (MQ=60)

                      ACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAA                                                                        <  SRR4302536.4779213/94‑1 (MQ=60)

                      ACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAA                                                                        >  SRR4302536.1191819/1‑94 (MQ=60)

                       CGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAAT                                                                       <  SRR4302536.2900285/94‑1 (MQ=60)

                       CGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAAT                                                                       <  SRR4302536.5078816/94‑1 (MQ=60)

                        GCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTTATA                                                                      >  SRR4302536.6918325/1‑94 (MQ=60)

                         CCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGCGCGGGAATCA                                                                     >  SRR4302536.1329930/1‑94 (MQ=60)

                          CACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCTGAGTGGTGCGGTAATAAA                                                                    <  SRR4302536.4709047/94‑1 (MQ=60)

                          CACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAA                                                                    >  SRR4302536.5227160/1‑94 (MQ=60)

                           ACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAAT                                                                   >  SRR4302536.1364368/1‑94 (MQ=60)

                             CTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTA                                                                 >  SRR4302536.3533212/1‑94 (MQ=60)

                             CTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTA                                                                 <  SRR4302536.3828893/94‑1 (MQ=60)

                              TTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAA                                                                <  SRR4302536.1049937/94‑1 (MQ=60)

                                CTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGACTGGCGGAGTGGTGCGGTAATAAATTAAAA                                                              >  SRR4302536.6860721/1‑94 (MQ=60)

                                 TATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAG                                                             <  SRR4302536.5611727/94‑1 (MQ=60)

                                 TATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAG                                                             >  SRR4302536.741744/1‑94 (MQ=60)

                                 TATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAG                                                             <  SRR4302536.230647/94‑1 (MQ=60)

                                  ATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGA                                                            <  SRR4302536.5235680/94‑1 (MQ=60)

                                   TGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAA                                                           >  SRR4302536.3606912/1‑94 (MQ=60)

                                   TGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAA                                                           >  SRR4302536.5022690/1‑94 (MQ=60)

                                    GAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAG                                                          >  SRR4302536.2511233/1‑94 (MQ=60)

                                    GAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAG                                                          <  SRR4302536.5101778/94‑1 (MQ=60)

                                    GAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAG                                                          <  SRR4302536.818959/94‑1 (MQ=60)

                                    GAAAAATATTACGGCTTTACCCATCAATACACGGATCTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAG                                                          <  SRR4302536.981275/94‑1 (MQ=60)

                                     AAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGC                                                         <  SRR4302536.5244114/94‑1 (MQ=60)

                                     AAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGC                                                         <  SRR4302536.1337518/94‑1 (MQ=60)

                                     AAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGC                                                         >  SRR4302536.5638705/1‑94 (MQ=60)

                                     AAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGC                                                         <  SRR4302536.1997688/94‑1 (MQ=60)

                                       AAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGA                                                       >  SRR4302536.533378/1‑94 (MQ=60)

                                       AAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGA                                                       <  SRR4302536.5715976/94‑1 (MQ=60)

                                       AAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGA                                                       >  SRR4302536.4048873/1‑94 (MQ=60)

                                        AATATTACGGCTTTACCCATTAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAA                                                      >  SRR4302536.6735192/1‑94 (MQ=60)

                                        AATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAA                                                      <  SRR4302536.4683804/94‑1 (MQ=60)

                                         ATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAAT                                                     >  SRR4302536.6622853/1‑94 (MQ=60)

                                          TATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATT                                                    <  SRR4302536.602048/94‑1 (MQ=60)

                                           ATTACGGCTTTCCCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTT                                                   <  SRR4302536.5921583/94‑1 (MQ=60)

                                           ATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTT                                                   >  SRR4302536.1254692/1‑94 (MQ=60)

                                            TTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTG                                                  <  SRR4302536.4267410/94‑1 (MQ=60)

                                            TTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTG                                                  <  SRR4302536.5513248/94‑1 (MQ=60)

                                            TTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTG                                                  <  SRR4302536.4243957/94‑1 (MQ=60)

                                              ACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAT                                                <  SRR4302536.1343945/94‑1 (MQ=60)

                                              ACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGAGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAT                                                >  SRR4302536.2020719/1‑94 (MQ=60)

                                               CGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATT                                               <  SRR4302536.4044384/94‑1 (MQ=60)

                                               CGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATT                                               <  SRR4302536.3953768/94‑1 (MQ=60)

                                               CGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATT                                               >  SRR4302536.5645329/1‑94 (MQ=60)

                                               CGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATT                                               <  SRR4302536.82338/94‑1 (MQ=60)

                                               CGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAACAAGCGAATTTGATT                                               >  SRR4302536.3118168/1‑94 (MQ=60)

                                                GGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTG                                              <  SRR4302536.4209412/94‑1 (MQ=60)

                                                GGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTG                                              <  SRR4302536.931258/94‑1 (MQ=60)

                                                GGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTG                                              <  SRR4302536.3377589/94‑1 (MQ=60)

                                                 GCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGC                                             >  SRR4302536.6196379/1‑94 (MQ=60)

                                                  CTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCG                                            >  SRR4302536.5743429/1‑94 (MQ=60)

                                                   TTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGG                                           <  SRR4302536.4341837/94‑1 (MQ=60)

                                                    TTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGT                                          >  SRR4302536.2499681/1‑94 (MQ=60)

                                                    TTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGT                                          <  SRR4302536.4629791/94‑1 (MQ=60)

                                                     TACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTG                                         >  SRR4302536.6315796/1‑94 (MQ=60)

                                                     TACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTG                                         >  SRR4302536.1015200/1‑94 (MQ=60)

                                                        CCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCG                                      >  SRR4302536.630061/1‑94 (MQ=60)

                                                         CATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGCCGGAGAGGTGCGGTAATAAATTAAAAGAAGCGAATCTGATTGCGGTGCCGG                                     >  SRR4302536.4561769/1‑94 (MQ=60)

                                                          CTCAATCCCCGGAACTGTTGGAACAGGCAGCCTACAGGCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGAATGCGGTGCCGGG                                    <  SRR4302536.6104649/94‑1 (MQ=60)

                                                          ATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGG                                    <  SRR4302536.3053254/94‑1 (MQ=60)

                                                          ATCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGG                                    >  SRR4302536.1559299/1‑94 (MQ=60)

                                                           TCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGC                                   <  SRR4302536.968572/94‑1 (MQ=60)

                                                           TCAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGC                                   >  SRR4302536.4376080/1‑94 (MQ=60)

                                                            GAATACCCGGAACTGTTGGAACAGGCACCCTACAGTCTGGCGCAGTCGTGCGGTAATAAATTAAAAGAACCGAATTTGATCGCGGTGCCCGGCT                                  <  SRR4302536.1870889/94‑1 (MQ=60)

                                                            CAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCT                                  >  SRR4302536.3744131/1‑94 (MQ=60)

                                                            CAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCT                                  <  SRR4302536.2788953/94‑1 (MQ=60)

                                                            CAATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGGGGTGCGGGAATAAATTAAAAGAAGCGAATTTGAATGCGGTGCCGGGCT                                  >  SRR4302536.6713319/1‑94 (MQ=60)

                                                             AATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTG                                 >  SRR4302536.6003197/1‑94 (MQ=60)

                                                              ATACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGT                                >  SRR4302536.1240899/1‑94 (MQ=60)

                                                                ACCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTA                              >  SRR4302536.3527839/1‑94 (MQ=60)

                                                                 CCCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTAT                             >  SRR4302536.2879543/1‑94 (MQ=60)

                                                                  CCGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATC                            <  SRR4302536.4639991/94‑1 (MQ=60)

                                                                   CGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCC                           >  SRR4302536.259594/1‑94 (MQ=60)

                                                                   CGGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGAGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATTC                           >  SRR4302536.3244629/1‑94 (MQ=60)

                                                                    GGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCG                          <  SRR4302536.1730057/94‑1 (MQ=60)

                                                                    GGAACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCG                          <  SRR4302536.947755/94‑1 (MQ=60)

                                                                      AACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAC                        >  SRR4302536.4195589/1‑94 (MQ=60)

                                                                      AACTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGAC                        >  SRR4302536.4295449/1‑94 (MQ=60)

                                                                        CTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGG                      >  SRR4302536.4181044/1‑94 (MQ=60)

                                                                        CTGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGG                      >  SRR4302536.2786860/1‑94 (MQ=60)

                                                                         TGTTGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGC                     >  SRR4302536.6071033/1‑94 (MQ=60)

                                                                            TGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGC                  >  SRR4302536.176479/1‑94 (MQ=60)

                                                                            TGGAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGC                  <  SRR4302536.3907520/94‑1 (MQ=60)

                                                                              GAACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCAC                >  SRR4302536.1509847/1‑94 (MQ=60)

                                                                               AACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACA               <  SRR4302536.4630788/94‑1 (MQ=60)

                                                                                ACAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAG              >  SRR4302536.2007311/1‑94 (MQ=60)

                                                                                 CAGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGC             >  SRR4302536.6858779/1‑94 (MQ=60)

                                                                                  aggagtCCTACGGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCT            <  SRR4302536.1882991/88‑1 (MQ=60)

                                                                                  AGGCGGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCT            <  SRR4302536.1413665/94‑1 (MQ=60)

                                                                                  AGGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGTGACAGCT            >  SRR4302536.3302487/1‑94 (MQ=60)

                                                                                   GGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTG           <  SRR4302536.4509076/94‑1 (MQ=60)

                                                                                   GGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTG           <  SRR4302536.2609361/94‑1 (MQ=60)

                                                                                   GGCAGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTG           <  SRR4302536.1335496/94‑1 (MQ=60)

                                                                                      AGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCG        >  SRR4302536.4938746/1‑94 (MQ=60)

                                                                                      AGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCG        >  SRR4302536.5943892/1‑94 (MQ=60)

                                                                                      AGCCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTCGCG        >  SRR4302536.3157909/1‑94 (MQ=60)

                                                                                        CCTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCT      <  SRR4302536.1631605/94‑1 (MQ=60)

                                                                                        CCTACAGTCTGGCGGAGTGGTGCGGGAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAACTGGCGCG      >  SRR4302536.5398985/1‑94 (MQ=60)

                                                                                         CTACAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTG     <  SRR4302536.5458913/94‑1 (MQ=60)

                                                                                         CTACAGTCTGGCGGAGTGGGGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTG     >  SRR4302536.2763950/1‑94 (MQ=60)

                                                                                            CAGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTCCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAA  <  SRR4302536.5545655/94‑1 (MQ=60)

TCCGGCGCGTTTCGTGTTAACGACGCCACCTTCTATGAAAAATATTACGGCTTTACCCATCAATACCCGGAACTGTTGGAACAGGCAGCCTACGGTCTGGCGGAGTGGTGCGGTAATAAATTAAAAGAAGCGAATTTGATTGCGGTGCCGGGCTGTTATCCGACGGCGGCACAGCTGGCGCTGAAA  >  NC_000913/4152886‑4153071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`