Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,158,977	T→C	V111A (GTC→GCC)	yijC →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,158,977	0	T	C	100.0%	933.9 / NA	289	V111A (GTC→GCC)	yijC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (126/163); total (126/163)

Only 100 of 299 total aligned reads displayed.

TGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG  >  NC_000913/4158887‑4159066

tGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGcct                                                                                         <  2:1350700/93‑1 (MQ=255)

 ggTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGcctc                                                                                        <  2:2343872/93‑1 (MQ=255)

  gTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTcc                                                                                       <  2:1238681/93‑1 (MQ=255)

         agagCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTa                                                                                <  1:397980/93‑1 (MQ=255)

         agagCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTa                                                                                <  1:4559028/93‑1 (MQ=255)

          gagCGGTTTATTGCTACGCGAGCTCATGCGCCAGGCGCCTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCGCCTCGGCCTCCACATTTAt                                                                               <  1:3140440/93‑1 (MQ=255)

          gagCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAt                                                                               >  1:1029875/1‑93 (MQ=255)

            gCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATgg                                                                             >  2:1085864/1‑93 (MQ=255)

            gCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATgg                                                                             <  1:4697754/93‑1 (MQ=255)

             cGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGa                                                                            <  2:877594/93‑1 (MQ=255)

               gTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGt                                                                          >  1:6684949/1‑93 (MQ=255)

                tttAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGtt                                                                         <  2:6083603/93‑1 (MQ=255)

                tttAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGtt                                                                         >  1:6075788/1‑93 (MQ=255)

                cttAATGCTACGCCAACTCATGCGCCAGGCGCATCAGCATATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGtt                                                                         <  1:4855802/92‑1 (MQ=255)

                  tAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCa                                                                       <  2:164039/93‑1 (MQ=255)

                   aaTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAt                                                                      <  2:5648370/93‑1 (MQ=255)

                   aaTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCAt                                                                      <  1:1164514/93‑1 (MQ=255)

                    aTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATc                                                                     <  2:6640384/93‑1 (MQ=255)

                    aTGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGACTTCATc                                                                     <  1:5554271/93‑1 (MQ=255)

                    aTGCTACGCAAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATc                                                                     <  1:1929294/93‑1 (MQ=255)

                     tGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCg                                                                    <  2:2782635/93‑1 (MQ=255)

                      gCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCgg                                                                   >  1:2867655/1‑93 (MQ=255)

                      gCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCgg                                                                   >  1:5014792/1‑93 (MQ=255)

                         aCGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaa                                                                >  2:2960998/1‑93 (MQ=255)

                         aCGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaa                                                                <  1:477042/93‑1 (MQ=255)

                         aCGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaa                                                                <  2:2054597/93‑1 (MQ=255)

                         aCGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaa                                                                <  2:1967981/93‑1 (MQ=255)

                           gCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaata                                                              >  2:5465534/1‑93 (MQ=255)

                            ccAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaataa                                                             <  2:4573211/93‑1 (MQ=255)

                            ccAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaataa                                                             <  1:2614576/93‑1 (MQ=255)

                            ccAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGtaataa                                                             <  1:4259698/93‑1 (MQ=255)

                              aaCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATc                                                           >  2:5384613/1‑93 (MQ=255)

                              aaCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATc                                                           <  1:2360081/93‑1 (MQ=255)

                               aCTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATcc                                                          >  1:178006/1‑93 (MQ=255)

                                cTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         <  2:3722779/93‑1 (MQ=255)

                                cTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         <  2:1730928/93‑1 (MQ=255)

                                cTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCt                                                         >  1:5296087/1‑93 (MQ=255)

                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  1:6658334/93‑1 (MQ=255)

                                  cATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTaa                                                       <  2:679375/93‑1 (MQ=255)

                                   aTGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAc                                                      >  2:6184655/1‑93 (MQ=255)

                                    tGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACg                                                     <  1:2215862/93‑1 (MQ=255)

                                     gcgcCAGGCGCGTCAGCGTAGCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGc                                                    <  2:2709967/93‑1 (MQ=255)

                                      cgcCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGcc                                                   <  1:2098808/93‑1 (MQ=255)

                                       gcCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCt                                                  >  2:764133/1‑93 (MQ=255)

                                       gcCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGCCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCt                                                  <  2:3563804/93‑1 (MQ=255)

                                        ccAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCtt                                                 >  2:1404609/1‑93 (MQ=255)

                                        ccAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGGGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCtt                                                 >  1:2513995/1‑93 (MQ=255)

                                        ccAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGGGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCtc                                                 >  2:3378765/1‑92 (MQ=255)

                                         cAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCTCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTc                                                <  2:6529020/93‑1 (MQ=255)

                                          aGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTcc                                               <  2:4746742/93‑1 (MQ=255)

                                          aGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTcc                                               >  1:1502974/1‑93 (MQ=255)

                                          aGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTcc                                               >  1:3292874/1‑93 (MQ=255)

                                          aGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTcc                                               <  1:6356950/93‑1 (MQ=255)

                                          aGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTcc                                               >  1:3379244/1‑93 (MQ=255)

                                           ggCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCg                                              <  2:6235298/93‑1 (MQ=255)

                                           ggCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCg                                              <  1:963892/93‑1 (MQ=255)

                                           ggCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCg                                              <  1:4444005/93‑1 (MQ=255)

                                           ggCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCg                                              <  1:770529/93‑1 (MQ=255)

                                           ggCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCg                                              <  2:212267/93‑1 (MQ=255)

                                             cgcgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGt                                            <  1:4625401/93‑1 (MQ=255)

                                             cgcgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGCCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGt                                            <  2:584288/93‑1 (MQ=255)

                                              gcgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtt                                           >  2:1576841/1‑93 (MQ=255)

                                               cgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtta                                          >  2:2456568/1‑93 (MQ=255)

                                               cgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtta                                          <  1:6145065/93‑1 (MQ=255)

                                               cgTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGtta                                          >  1:599175/1‑93 (MQ=255)

                                                gTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttat                                         <  2:3189912/93‑1 (MQ=255)

                                                gTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttat                                         <  2:4968521/93‑1 (MQ=255)

                                                gTCAGCGTATCACCAAAGGCGGGAGTGTGATCCCCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttat                                         <  2:5559801/93‑1 (MQ=255)

                                                 tCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatt                                        <  1:6492566/93‑1 (MQ=255)

                                                  cAGCTTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatta                                       <  1:5210305/93‑1 (MQ=255)

                                                  cAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGttatta                                       >  2:6600812/1‑93 (MQ=255)

                                                    gCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTattatt                                     >  1:3090297/1‑93 (MQ=255)

                                                      gTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGc                                   >  2:4865399/1‑93 (MQ=255)

                                                      gTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGc                                   >  1:710587/1‑93 (MQ=255)

                                                           gCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGaa                              <  2:3256612/93‑1 (MQ=255)

                                                           gCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGaa                              <  1:3743146/93‑1 (MQ=255)

                                                            ccAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAc                             >  2:5799470/1‑93 (MQ=255)

                                                             cAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACg                            <  1:1325329/93‑1 (MQ=255)

                                                              aaaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGc                           <  1:4174607/93‑1 (MQ=255)

                                                              aaaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGc                           >  2:2588122/1‑93 (MQ=255)

                                                              aaaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGc                           <  2:5184398/93‑1 (MQ=255)

                                                               aaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCt                          >  1:3555320/1‑93 (MQ=255)

                                                               aaGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCt                          <  1:2192889/93‑1 (MQ=255)

                                                                aGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTc                         <  2:4692827/93‑1 (MQ=255)

                                                                aGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTc                         >  2:3468904/1‑93 (MQ=255)

                                                                 ggCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTcc                        <  1:1417823/93‑1 (MQ=255)

                                                                    gggAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGc                     <  1:4352447/93‑1 (MQ=255)

                                                                       agggtgATCCGCACCTCGGCCGCCACATTTATGGAGTTCATCGGTAATGATCCTAACGCCTTCCGGTTAGTATTGCTGGTACGCTCCGGCAcc                  >  1:2390709/4‑93 (MQ=255)

                                                                        gtgtGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCt                 <  1:3926190/93‑1 (MQ=255)

                                                                          gtgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTcc               <  2:6391929/93‑1 (MQ=255)

                                                                           tgATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCg              <  2:3892475/93‑1 (MQ=255)

                                                                               ccGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGc          <  2:1839047/93‑1 (MQ=255)

                                                                                 gCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGt        >  2:1182326/1‑93 (MQ=255)

                                                                                  cACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGtt       >  1:4133492/1‑93 (MQ=255)

                                                                                   cccTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGttt      <  2:4261614/92‑1 (MQ=255)

                                                                                   aCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGttt      >  2:4437767/1‑93 (MQ=255)

                                                                                   aCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGttt      <  2:3104039/93‑1 (MQ=255)

                                                                                      tCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGt   >  2:599873/1‑93 (MQ=255)

                                                                                      tCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGt   >  1:1564338/1‑93 (MQ=255)

                                                                                      tCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGt   >  1:833615/1‑93 (MQ=255)

TGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG  >  NC_000913/4158887‑4159066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  NC_000913/4158884‑4159070

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGC                                                                                               >  SRR4302536.2876615/1‑94 (MQ=60)

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGC                                                                                               <  SRR4302536.4999133/94‑1 (MQ=60)

 CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCCCCTCGGCC                                                                                              <  SRR4302536.6473731/94‑1 (MQ=60)

 CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCC                                                                                              >  SRR4302536.6122765/1‑94 (MQ=60)

 CATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGGGTGATCCGCACCTCGGCC                                                                                              >  SRR4302536.4453900/1‑94 (MQ=60)

  ATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCT                                                                                             >  SRR4302536.5744847/1‑94 (MQ=60)

  ATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCT                                                                                             >  SRR4302536.463306/1‑94 (MQ=60)

    GGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCC                                                                                           >  SRR4302536.1473267/1‑94 (MQ=60)

         ATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATT                                                                                      >  SRR4302536.3080181/1‑94 (MQ=60)

          TGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTT                                                                                     <  SRR4302536.4095901/94‑1 (MQ=60)

          TGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTT                                                                                     <  SRR4302536.4873174/94‑1 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   >  SRR4302536.1060394/1‑94 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302536.4695801/94‑1 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302536.408515/94‑1 (MQ=60)

            AGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTAT                                                                                   <  SRR4302536.4303269/94‑1 (MQ=60)

             GAGCGGTTTATTGCTACGCGAGCTCATGCGCCAGGCGCCTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCGCCTCGGCCTCCACATTTATG                                                                                  <  SRR4302536.3232364/94‑1 (MQ=60)

             GAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATG                                                                                  <  SRR4302536.5631962/94‑1 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 <  SRR4302536.3228665/94‑1 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 >  SRR4302536.5195193/1‑94 (MQ=60)

              AGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGG                                                                                 <  SRR4302536.5382405/94‑1 (MQ=60)

               GCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGA                                                                                <  SRR4302536.4839009/94‑1 (MQ=60)

                CGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAG                                                                               >  SRR4302536.844293/1‑94 (MQ=60)

                CGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAG                                                                               <  SRR4302536.869200/94‑1 (MQ=60)

                 GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                              <  SRR4302536.5096771/94‑1 (MQ=60)

                 GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                              >  SRR4302536.6883497/1‑94 (MQ=60)

                 GGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGT                                                                              <  SRR4302536.74582/94‑1 (MQ=60)

                  GTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTT                                                                             >  SRR4302536.6257029/1‑94 (MQ=60)

                  GTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTT                                                                             <  SRR4302536.1019744/94‑1 (MQ=60)

                   TTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTC                                                                            >  SRR4302536.1340158/1‑94 (MQ=60)

                   CTTAATGCTACGCCAACTCATGCGCCAGGCGCATCAGCATATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTC                                                                            <  SRR4302536.5001918/94‑1 (MQ=60)

                    TTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCA                                                                           <  SRR4302536.2974862/94‑1 (MQ=60)

                      AATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATC                                                                         >  SRR4302536.4268825/1‑94 (MQ=60)

                      AATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATC                                                                         <  SRR4302536.1199566/94‑1 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        <  SRR4302536.2448673/94‑1 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        <  SRR4302536.2448772/94‑1 (MQ=60)

                       ATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGACTTCATCG                                                                        <  SRR4302536.5719714/94‑1 (MQ=60)

                       ATGCTACGCAAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCG                                                                        <  SRR4302536.1987336/94‑1 (MQ=60)

                        TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       >  SRR4302536.5165173/1‑94 (MQ=60)

                        TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       >  SRR4302536.2952363/1‑94 (MQ=60)

                        TGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGG                                                                       >  SRR4302536.4545403/1‑94 (MQ=60)

                          CTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGTCCTCCACATTTATGGAGTTCATCGGTA                                                                     <  SRR4302536.6871561/94‑1 (MQ=60)

                          CTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTA                                                                     <  SRR4302536.6390319/94‑1 (MQ=60)

                            ACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAAT                                                                   <  SRR4302536.4155943/94‑1 (MQ=60)

                            ACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAAT                                                                   <  SRR4302536.489456/94‑1 (MQ=60)

                             CGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATA                                                                  <  SRR4302536.2644040/94‑1 (MQ=60)

                             CGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATA                                                                  <  SRR4302536.3672073/94‑1 (MQ=60)

                              GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                                 <  SRR4302536.2780052/94‑1 (MQ=60)

                              GCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAA                                                                 <  SRR4302536.6867317/94‑1 (MQ=60)

                               CCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAAT                                                                <  SRR4302536.406307/94‑1 (MQ=60)

                               CCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAAT                                                                <  SRR4302536.2693024/94‑1 (MQ=60)

                               CCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAAT                                                                <  SRR4302536.4386631/94‑1 (MQ=60)

                                CAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATC                                                               >  SRR4302536.1014042/1‑94 (MQ=60)

                                 AACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCC                                                              >  SRR4302536.3891037/1‑94 (MQ=60)

                                 AACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCC                                                              <  SRR4302536.2431622/94‑1 (MQ=60)

                                 AACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCC                                                              >  SRR4302536.182699/1‑94 (MQ=60)

                                  ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                             <  SRR4302536.1196695/94‑1 (MQ=60)

                                  ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                             >  SRR4302536.6332487/1‑94 (MQ=60)

                                  ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                             <  SRR4302536.2534911/94‑1 (MQ=60)

                                  ACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCT                                                             >  SRR4302536.5454017/1‑94 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302536.4493647/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302536.2495825/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302536.6856216/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302536.4796712/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          <  SRR4302536.1524135/94‑1 (MQ=60)

                                     CATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAAC                                                          >  SRR4302536.3474980/1‑94 (MQ=60)

                                      ATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACG                                                         <  SRR4302536.2690195/94‑1 (MQ=60)

                                       TGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGC                                                        <  SRR4302536.2282823/94‑1 (MQ=60)

                                        GCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCC                                                       <  SRR4302536.6886468/94‑1 (MQ=60)

                                         CGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCT                                                      <  SRR4302536.2161933/94‑1 (MQ=60)

                                          GCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGGGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTT                                                     >  SRR4302536.2589798/1‑94 (MQ=60)

                                            CAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   >  SRR4302536.3479662/1‑94 (MQ=60)

                                            CAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   >  SRR4302536.183683/1‑94 (MQ=60)

                                            CAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   >  SRR4302536.156363/1‑94 (MQ=60)

                                            CAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   >  SRR4302536.3389818/1‑94 (MQ=60)

                                            CAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCC                                                   >  SRR4302536.1547289/1‑94 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  <  SRR4302536.6546331/94‑1 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  >  SRR4302536.96045/1‑94 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  <  SRR4302536.6616056/94‑1 (MQ=60)

                                             AGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCG                                                  >  SRR4302536.5503334/1‑94 (MQ=60)

                                              GGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGG                                                 <  SRR4302536.4577448/94‑1 (MQ=60)

                                              GGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGG                                                 <  SRR4302536.793124/94‑1 (MQ=60)

                                              GGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGG                                                 <  SRR4302536.992368/94‑1 (MQ=60)

                                               GCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGT                                                <  SRR4302536.2262944/94‑1 (MQ=60)

                                                CGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTT                                               <  SRR4302536.4764386/94‑1 (MQ=60)

                                                CGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTT                                               <  SRR4302536.1810618/94‑1 (MQ=60)

                                                CGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTT                                               <  SRR4302536.787313/94‑1 (MQ=60)

                                                 GCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTA                                              <  SRR4302536.5445147/94‑1 (MQ=60)

                                                 GCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTA                                              >  SRR4302536.616295/1‑94 (MQ=60)

                                                  gcTCAGCGTATCGCCAAAGGCGGGAGTGTTATGCGCCCCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTACCGCCTTCCGGTTAT                                             <  SRR4302536.3935891/92‑1 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATTGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             >  SRR4302536.4739516/1‑94 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             <  SRR4302536.4914166/94‑1 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTAT                                             <  SRR4302536.6328154/94‑1 (MQ=60)

                                                  CGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGCAATAATCCTAACGCCTTCCGGTTAT                                             <  SRR4302536.3252560/94‑1 (MQ=60)

                                                   GTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATT                                            <  SRR4302536.1393092/94‑1 (MQ=60)

                                                    TCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTA                                           <  SRR4302536.6686151/94‑1 (MQ=60)

                                                     CAGCTTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          <  SRR4302536.5365600/94‑1 (MQ=60)

                                                     CAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTAT                                          >  SRR4302536.6549756/1‑94 (MQ=60)

                                                      AGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTCTT                                         >  SRR4302536.3795315/1‑94 (MQ=60)

                                                      AGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATT                                         >  SRR4302536.3180643/1‑94 (MQ=60)

                                                       GCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTG                                        <  SRR4302536.3659030/94‑1 (MQ=60)

                                                        CGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGC                                       >  SRR4302536.731359/1‑94 (MQ=60)

                                                        CGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGC                                       >  SRR4302536.4756153/1‑94 (MQ=60)

                                                         GTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCG                                      <  SRR4302536.4920966/94‑1 (MQ=60)

                                                          TATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGG                                     >  SRR4302536.1857113/1‑94 (MQ=60)

                                                           ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                    >  SRR4302536.1570557/1‑94 (MQ=60)

                                                           ATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGCTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGG                                    >  SRR4302536.819515/1‑94 (MQ=60)

                                                              GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                                 <  SRR4302536.4911088/94‑1 (MQ=60)

                                                              GCCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAAC                                 <  SRR4302536.3855055/94‑1 (MQ=60)

                                                               CCAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACG                                >  SRR4302536.693176/1‑94 (MQ=60)

                                                                CAAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGC                               <  SRR4302536.1364886/94‑1 (MQ=60)

                                                                 AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCT                              <  SRR4302536.4298625/94‑1 (MQ=60)

                                                                 AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCT                              >  SRR4302536.3661630/1‑94 (MQ=60)

                                                                 AAAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCT                              >  SRR4302536.2237536/1‑94 (MQ=60)

                                                                  AAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTC                             >  SRR4302536.2293489/1‑94 (MQ=60)

                                                                  AAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTC                             <  SRR4302536.2259042/94‑1 (MQ=60)

                                                                  AAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTC                             >  SRR4302536.6271624/1‑94 (MQ=60)

                                                                  AAGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTC                             <  SRR4302536.1687983/94‑1 (MQ=60)

                                                                  AAGGCGGGAGGGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGGACGCTC                             >  SRR4302536.5146862/1‑94 (MQ=60)

                                                                   AGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCC                            >  SRR4302536.3219740/1‑94 (MQ=60)

                                                                   AGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCC                            >  SRR4302536.3480567/1‑94 (MQ=60)

                                                                   AGGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCC                            <  SRR4302536.4600944/94‑1 (MQ=60)

                                                                   AGG‑GGGAGAGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           <  SRR4302536.1290849/94‑1 (MQ=60)

                                                                    GGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           <  SRR4302536.1459976/94‑1 (MQ=60)

                                                                    GGCGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCG                           <  SRR4302536.4258747/94‑1 (MQ=60)

                                                                      CGGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGC                         >  SRR4302536.2247357/1‑94 (MQ=60)

                                                                       GGGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCA                        <  SRR4302536.4482660/94‑1 (MQ=60)

                                                                        GGAGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCAC                       >  SRR4302536.3460101/1‑94 (MQ=60)

                                                                         GAGGGTGATCCGCACCTCGGCCGCCACATTTATGGAGTTCATCGGTAATGATCCTAACGCCTTCCGGTTAGTATTGCTGGTACGCTCCGGCACC                      >  SRR4302536.2463093/1‑94 (MQ=60)

                                                                          AGTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCT                     >  SRR4302536.234712/1‑94 (MQ=60)

                                                                           GTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTC                    <  SRR4302536.4819195/94‑1 (MQ=60)

                                                                           GTGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTC                    <  SRR4302536.4042855/94‑1 (MQ=60)

                                                                            TGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                   <  SRR4302536.6188303/94‑1 (MQ=60)

                                                                            TGTGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCC                   <  SRR4302536.2047509/94‑1 (MQ=60)

                                                                              TGATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGC                 >  SRR4302536.4365265/1‑94 (MQ=60)

                                                                              TGAGCCGCACCTCGTCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGC                 <  SRR4302536.1401917/94‑1 (MQ=60)

                                                                               GATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCT                <  SRR4302536.2275232/94‑1 (MQ=60)

                                                                                ATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTG               >  SRR4302536.6167849/1‑94 (MQ=60)

                                                                                ATCCGCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTG               <  SRR4302536.6844328/94‑1 (MQ=60)

                                                                                    GCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTT           >  SRR4302536.4244973/1‑94 (MQ=60)

                                                                                    GCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTT           >  SRR4302536.4256035/1‑94 (MQ=60)

                                                                                    GCACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTT           >  SRR4302536.2032963/1‑94 (MQ=60)

                                                                                     CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          <  SRR4302536.4444057/94‑1 (MQ=60)

                                                                                     CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          <  SRR4302536.5202152/94‑1 (MQ=60)

                                                                                     CACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTT          >  SRR4302536.4473649/1‑94 (MQ=60)

                                                                                      ACCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTC         <  SRR4302536.2907082/94‑1 (MQ=60)

                                                                                       CCTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCG        <  SRR4302536.6270884/94‑1 (MQ=60)

                                                                                        CTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGT       >  SRR4302536.1610268/1‑94 (MQ=60)

                                                                                        CTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGT       >  SRR4302536.858131/1‑94 (MQ=60)

                                                                                        CTCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGT       <  SRR4302536.6790888/94‑1 (MQ=60)

                                                                                         TCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG      >  SRR4302536.6213541/1‑94 (MQ=60)

                                                                                         TCGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTG      <  SRR4302536.3330517/94‑1 (MQ=60)

                                                                                          CGGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGC     >  SRR4302536.3281224/1‑94 (MQ=60)

                                                                                           GGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC    <  SRR4302536.958123/94‑1 (MQ=60)

                                                                                           GGCCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCC    >  SRR4302536.1307537/1‑94 (MQ=60)

                                                                                             CCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  SRR4302536.4643785/1‑94 (MQ=60)

                                                                                             CCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  SRR4302536.3062751/1‑94 (MQ=60)

                                                                                             CCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  SRR4302536.3056977/1‑94 (MQ=60)

                                                                                             CCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  SRR4302536.6650834/1‑94 (MQ=60)

CCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTCGGTCTCCACATTTATGGAGTTCATCGGTAATAATCCTAACGCCTTCCGGTTATTATTGCGGGAACGCTCCGGCACCTCCGCTGCGTTTCGTGCCGC  >  NC_000913/4158884‑4159070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`