Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,185,074	A→G	Q716R (CAG→CGG)	rpoC →	RNA polymerase beta prime subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,185,074	0	A	G	99.3%	982.3 / NA	303	Q716R (CAG→CGG)	rpoC	RNA polymerase beta prime subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (161/140); minor base T (1/1); total (162/141)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 312 total aligned reads displayed.

GGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTC  >  NC_000913/4184984‑4185163

gggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCggg                                                                                         <  2:2869775/93‑1 (MQ=255)

gggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCggg                                                                                         <  1:811393/93‑1 (MQ=255)

 ggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGt                                                                                        <  1:3788171/93‑1 (MQ=255)

 ggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGt                                                                                        >  2:2081278/1‑93 (MQ=255)

  gCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGtt                                                                                       <  1:1299616/93‑1 (MQ=255)

     gcggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTcc                                                                                    >  1:5587941/1‑93 (MQ=255)

      cggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCt                                                                                   <  2:2008211/93‑1 (MQ=255)

      cggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCt                                                                                   <  1:2951439/93‑1 (MQ=255)

      cggcgAACGATCGTGTATCCAAAGAGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCt                                                                                   <  2:5352429/93‑1 (MQ=255)

        gcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTc                                                                                 <  1:4909182/93‑1 (MQ=255)

        gcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTc                                                                                 >  1:1762395/1‑93 (MQ=255)

        gcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTc                                                                                 >  2:3907430/1‑93 (MQ=255)

         cgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCa                                                                                <  2:6130416/93‑1 (MQ=255)

          gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCaa                                                                               >  1:1571331/1‑93 (MQ=255)

              gATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGc                                                                           >  2:6411738/1‑93 (MQ=255)

               aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCa                                                                          >  1:3335471/1‑93 (MQ=255)

               aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCa                                                                          >  2:1175992/1‑93 (MQ=255)

                 cGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATc                                                                        <  1:5903034/93‑1 (MQ=255)

                  gtgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCt                                                                       <  1:1995405/93‑1 (MQ=255)

                  gtgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCt                                                                       >  1:1093504/1‑93 (MQ=255)

                   tgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTa                                                                      >  1:6689133/1‑93 (MQ=255)

                   tgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTa                                                                      <  2:4434854/93‑1 (MQ=255)

                    gtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTAc                                                                     >  2:1586084/1‑93 (MQ=255)

                    gtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTAc                                                                     >  2:857518/1‑93 (MQ=255)

                     tATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTTAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACa                                                                    <  1:3171846/93‑1 (MQ=255)

                     tATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACa                                                                    <  2:4499219/93‑1 (MQ=255)

                       tCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatg                                                                  >  2:743963/1‑93 (MQ=255)

                        ccAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatga                                                                 <  2:4261794/93‑1 (MQ=255)

                         cAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACatgat                                                                >  1:1367213/1‑93 (MQ=255)

                             gCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGCTTCCTTCAACAGCATCTACATGATGGcc                                                            >  2:3716213/1‑93 (MQ=255)

                              cGATGATGGATACCCTGCAACCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGAGTTTCCTTCAACAGCATCTACATGATGGCCg                                                           <  1:2408536/93‑1 (MQ=255)

                              cGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCg                                                           <  1:57035/93‑1 (MQ=255)

                               gatgatGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGa                                                          >  2:3409091/1‑93 (MQ=255)

                                 tgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACt                                                        >  2:4766271/1‑93 (MQ=255)

                                 tgatgGATAACCTGCAAACTGAAACCGTGATTAACCGGGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCGACATGATGGCCGAcg                                                        >  1:6209982/1‑92 (MQ=255)

                                   atgGATAACCTGCAAACTGAATCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGGTTGCTTCAACAGCATCTACATGATGGCCGACTcc                                                      >  2:3160394/1‑93 (MQ=255)

                                     ggATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCgg                                                    >  2:2414153/1‑93 (MQ=255)

                                     ggATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCgg                                                    >  1:2839225/1‑93 (MQ=255)

                                     ggATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCgg                                                    >  1:958702/1‑93 (MQ=255)

                                     ggATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCgg                                                    <  1:6478640/93‑1 (MQ=255)

                                       aTAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGCAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACCCAGGTg                                                  >  1:5938145/1‑93 (MQ=255)

                                       aTAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTg                                                  >  1:5032640/1‑93 (MQ=255)

                                         aaCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgcg                                                >  2:4975539/1‑93 (MQ=255)

                                         aaCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGACGACTCCCGTgcg                                                >  2:464332/1‑93 (MQ=255)

                                          aCCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCAGACTCCGGTgcgc                                               >  1:2277360/1‑93 (MQ=255)

                                           ccTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGcgcg                                              >  2:104658/1‑93 (MQ=255)

                                            cTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGcgcgg                                             >  2:3813188/1‑92 (MQ=255)

                                            cTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGt                                             >  2:6034370/1‑93 (MQ=255)

                                            cTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGt                                             <  1:4774801/93‑1 (MQ=255)

                                               cAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGt                                          <  1:1729592/93‑1 (MQ=255)

                                                 aaCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTc                                        <  2:5435553/93‑1 (MQ=255)

                                                 aaCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCAGACTCCGGTGCGCGTGGTTc                                        >  2:2707618/1‑93 (MQ=255)

                                                   cTGAAGCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTg                                      <  1:2716656/93‑1 (MQ=255)

                                                   cTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTg                                      >  2:2743672/1‑93 (MQ=255)

                                                    tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                                     >  2:5628956/1‑93 (MQ=255)

                                                    tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                                     >  1:4453052/1‑93 (MQ=255)

                                                    tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                                     <  1:2557093/93‑1 (MQ=255)

                                                    tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                                     <  2:4047433/93‑1 (MQ=255)

                                                    tGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                                     >  1:6584875/1‑93 (MQ=255)

                                                     gAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCg                                    >  2:5308496/1‑93 (MQ=255)

                                                     gAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCg                                    >  1:6274333/1‑93 (MQ=255)

                                                       aaCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGc                                  >  2:6262256/1‑93 (MQ=255)

                                                       aaCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGc                                  <  2:1371286/93‑1 (MQ=255)

                                                       aaCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGc                                  >  1:2489695/1‑93 (MQ=255)

                                                        aCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGca                                 >  2:2480194/1‑93 (MQ=255)

                                                        aCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGca                                 <  2:1789823/93‑1 (MQ=255)

                                                           gTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAg                              <  1:1011696/93‑1 (MQ=255)

                                                            tGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGa                             <  1:3607816/93‑1 (MQ=255)

                                                            tGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGa                             >  2:3648621/1‑93 (MQ=255)

                                                             gATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAt                            <  2:1057785/93‑1 (MQ=255)

                                                             gATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAt                            <  2:1936752/93‑1 (MQ=255)

                                                             gATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAt                            <  1:2105253/93‑1 (MQ=255)

                                                               ttAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGGACAGATTc                          >  1:3290117/1‑93 (MQ=255)

                                                               ttAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTc                          >  2:6465137/1‑93 (MQ=255)

                                                                tAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCg                         >  2:5188079/1‑93 (MQ=255)

                                                                  aCCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTc                       >  2:5463272/1‑93 (MQ=255)

                                                                  aCCGTGATGCTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTc                       <  1:5352119/93‑1 (MQ=255)

                                                                  aCCATGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAGCAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTc                       >  2:1507531/1‑93 (MQ=255)

                                                                    cGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAg                     >  2:3328404/1‑93 (MQ=255)

                                                                    cGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAg                     <  2:5740266/93‑1 (MQ=255)

                                                                    cGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAg                     >  2:1330410/1‑93 (MQ=255)

                                                                     gTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGc                    >  2:5871650/1‑93 (MQ=255)

                                                                     gTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGc                    >  1:1869057/1‑93 (MQ=255)

                                                                      tGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCt                   <  1:431538/93‑1 (MQ=255)

                                                                       gatggTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCtt                  >  2:1867419/4‑93 (MQ=255)

                                                                         tggTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGc                <  1:4597986/92‑1 (MQ=255)

                                                                         tggTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGc                <  2:5587941/92‑1 (MQ=255)

                                                                          ggTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCt               >  1:3067018/1‑93 (MQ=255)

                                                                            tCAGGCAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCACCTTGCTgg             >  1:5403014/1‑93 (MQ=255)

                                                                             cAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGt            <  2:2646291/93‑1 (MQ=255)

                                                                             cAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGt            >  2:4190222/1‑93 (MQ=255)

                                                                              aGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTa           >  1:1933239/1‑93 (MQ=255)

                                                                               ggAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAt          >  1:1503296/1‑93 (MQ=255)

                                                                               ggAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAt          >  2:2950554/1‑93 (MQ=255)

                                                                               ggAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAt          <  1:4526064/93‑1 (MQ=255)

                                                                               ggAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAt          <  1:148312/93‑1 (MQ=255)

                                                                               ggAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAt          >  1:3232950/1‑93 (MQ=255)

                                                                                   gagaAGCGTGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGt      <  2:2793729/93‑1 (MQ=255)

                                                                                     gaAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTgg    >  2:6614183/1‑93 (MQ=255)

                                                                                       aGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTc  >  2:5110690/1‑93 (MQ=255)

GGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTC  >  NC_000913/4184984‑4185163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGAT  >  NC_000913/4184981‑4185167

TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCG                                                                                               <  SRR4302536.1971575/94‑1 (MQ=60)

TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCG                                                                                               >  SRR4302536.2034827/1‑94 (MQ=60)

 CTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGG                                                                                              <  SRR4302536.3115935/94‑1 (MQ=60)

   GGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGT                                                                                            <  SRR4302536.835189/94‑1 (MQ=60)

    GGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTT                                                                                           <  SRR4302536.3901189/94‑1 (MQ=60)

    GGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTT                                                                                           >  SRR4302536.459645/1‑94 (MQ=60)

     GCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTT                                                                                          <  SRR4302536.2503241/94‑1 (MQ=60)

     GCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTT                                                                                          <  SRR4302536.1338454/94‑1 (MQ=60)

      CTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTC                                                                                         >  SRR4302536.4662877/1‑94 (MQ=60)

       TGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCC                                                                                        >  SRR4302536.5754150/1‑94 (MQ=60)

         CGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTT                                                                                      <  SRR4302536.3038424/94‑1 (MQ=60)

         CGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTT                                                                                      <  SRR4302536.6562859/94‑1 (MQ=60)

          GGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTC                                                                                     >  SRR4302536.1815468/1‑94 (MQ=60)

           GCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCA                                                                                    <  SRR4302536.5056761/94‑1 (MQ=60)

           GCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCA                                                                                    <  SRR4302536.1948324/94‑1 (MQ=60)

            CGACCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCTCGTTTCCTTCAA                                                                                   <  SRR4302536.3341889/94‑1 (MQ=60)

            CGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAA                                                                                   >  SRR4302536.6807672/1‑94 (MQ=60)

            CGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAA                                                                                   >  SRR4302536.1617410/1‑94 (MQ=60)

             GAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAAC                                                                                  >  SRR4302536.950998/1‑94 (MQ=60)

              AACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACA                                                                                 <  SRR4302536.1117054/94‑1 (MQ=60)

              AACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACA                                                                                 >  SRR4302536.4020316/1‑94 (MQ=60)

               ACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAG                                                                                <  SRR4302536.2578624/94‑1 (MQ=60)

               ACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAG                                                                                <  SRR4302536.607793/94‑1 (MQ=60)

               ACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAG                                                                                <  SRR4302536.5780282/94‑1 (MQ=60)

                CGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGC                                                                               >  SRR4302536.3533320/1‑94 (MQ=60)

                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                                              >  SRR4302536.3335474/1‑94 (MQ=60)

                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                                              >  SRR4302536.2899645/1‑94 (MQ=60)

                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                                              >  SRR4302536.3434245/1‑94 (MQ=60)

                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCA                                                                              >  SRR4302536.5261355/1‑94 (MQ=60)

                  ATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCAT                                                                             <  SRR4302536.5540777/94‑1 (MQ=60)

                  ATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGGTTCCTTCAACAGCAT                                                                             >  SRR4302536.5455906/1‑94 (MQ=60)

                  ATCGTATATCCAAAGCGATGATGGATAGCCTGCAAACGGAAGCCGTGATTAGCCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCAT                                                                             <  SRR4302536.5097017/94‑1 (MQ=60)

                    CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                                           >  SRR4302536.1126316/1‑94 (MQ=60)

                    CGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCT                                                                           <  SRR4302536.6078825/94‑1 (MQ=60)

                     GTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTA                                                                          >  SRR4302536.6887806/1‑94 (MQ=60)

                     GTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTA                                                                          <  SRR4302536.2055440/94‑1 (MQ=60)

                        TATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTTAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACAT                                                                       <  SRR4302536.3264777/94‑1 (MQ=60)

                        TATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACAT                                                                       <  SRR4302536.2122618/94‑1 (MQ=60)

                        TATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACAT                                                                       <  SRR4302536.2984543/94‑1 (MQ=60)

                           CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGAT                                                                    >  SRR4302536.1407967/1‑94 (MQ=60)

                            CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATG                                                                   >  SRR4302536.4013494/1‑94 (MQ=60)

                            CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATG                                                                   <  SRR4302536.2005215/94‑1 (MQ=60)

                            CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATG                                                                   <  SRR4302536.6822415/94‑1 (MQ=60)

                             AAAGTGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATTG                                                                  <  SRR4302536.1005136/94‑1 (MQ=60)

                             AAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGG                                                                  <  SRR4302536.6470154/94‑1 (MQ=60)

                              AAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGC                                                                 >  SRR4302536.6193414/1‑94 (MQ=60)

                              AAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGC                                                                 >  SRR4302536.1736777/1‑94 (MQ=60)

                               AGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATTGCC                                                                >  SRR4302536.6454262/1‑94 (MQ=60)

                               AGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCC                                                                <  SRR4302536.3406959/94‑1 (MQ=60)

                                 CGATGATGGATACCCTGCAACCTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGAGTTTCCTTCAACAGCATCTACATGATGGCCGA                                                              <  SRR4302536.2481399/94‑1 (MQ=60)

                                 CGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGA                                                              >  SRR4302536.2429760/1‑94 (MQ=60)

                                 CGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGA                                                              >  SRR4302536.5542422/1‑94 (MQ=60)

                                 CGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGA                                                              <  SRR4302536.58619/94‑1 (MQ=60)

                                 AGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGA                                                              >  SRR4302536.3267784/1‑94 (MQ=60)

                                  GATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAC                                                             <  SRR4302536.1544907/94‑1 (MQ=60)

                                  GATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGAC                                                             >  SRR4302536.2935290/1‑94 (MQ=60)

                                   ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                                            >  SRR4302536.4856911/1‑94 (MQ=60)

                                   ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGGGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCGACATGATGGCCGACG                                                            >  SRR4302536.6394993/1‑94 (MQ=60)

                                    TGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTC                                                           >  SRR4302536.2720037/1‑94 (MQ=60)

                                     GATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCC                                                          <  SRR4302536.2175630/94‑1 (MQ=60)

                                      ATGGATAGCCTGCAAACTGAACCCGTGATTAACCGCGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCCACTCCG                                                         <  SRR4302536.5695360/94‑1 (MQ=60)

                                       TGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGG                                                        >  SRR4302536.2923238/1‑94 (MQ=60)

                                       TGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGG                                                        >  SRR4302536.448547/1‑94 (MQ=60)

                                       TGGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGG                                                        >  SRR4302536.987040/1‑94 (MQ=60)

                                        GGATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGT                                                       <  SRR4302536.6671928/94‑1 (MQ=60)

                                         GATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGCAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACCCAGGTG                                                      >  SRR4302536.6115042/1‑94 (MQ=60)

                                         GATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTG                                                      >  SRR4302536.5183497/1‑94 (MQ=60)

                                         GATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTG                                                      >  SRR4302536.5626690/1‑94 (MQ=60)

                                          ATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGC                                                     >  SRR4302536.5813726/1‑94 (MQ=60)

                                          ATAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGC                                                     >  SRR4302536.3213166/1‑94 (MQ=60)

                                           TAACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCG                                                    >  SRR4302536.6229329/1‑94 (MQ=60)

                                            AACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCAGACTCCGGTGCGC                                                   >  SRR4302536.2346380/1‑94 (MQ=60)

                                            AACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGC                                                   <  SRR4302536.1215785/94‑1 (MQ=60)

                                            AACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGC                                                   >  SRR4302536.3550773/1‑94 (MQ=60)

                                            AACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGC                                                   >  SRR4302536.1631058/1‑94 (MQ=60)

                                             ACCTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCG                                                  >  SRR4302536.1918785/1‑94 (MQ=60)

                                               CTGCAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTG                                                <  SRR4302536.4918577/94‑1 (MQ=60)

                                                  CAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                                             <  SRR4302536.1400181/94‑1 (MQ=60)

                                                  CAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                                             >  SRR4302536.1535575/1‑94 (MQ=60)

                                                  CAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                                             <  SRR4302536.6890085/94‑1 (MQ=60)

                                                  CAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                                             <  SRR4302536.1593785/94‑1 (MQ=60)

                                                  CAAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                                             <  SRR4302536.1779521/94‑1 (MQ=60)

                                                   AAACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTC                                            >  SRR4302536.1481997/1‑94 (MQ=60)

                                                    AACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCT                                           >  SRR4302536.2007744/1‑94 (MQ=60)

                                                    AACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCT                                           <  SRR4302536.3799212/94‑1 (MQ=60)

                                                    AACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCACGTGGTTCT                                           <  SRR4302536.6739568/94‑1 (MQ=60)

                                                     ACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTG                                          <  SRR4302536.3041649/94‑1 (MQ=60)

                                                     ACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTG                                          >  SRR4302536.6094343/1‑94 (MQ=60)

                                                     ACTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTG                                          <  SRR4302536.462048/94‑1 (MQ=60)

                                                      CTGAAGCCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGC                                         <  SRR4302536.2797682/94‑1 (MQ=60)

                                                      CTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGC                                         >  SRR4302536.4586806/1‑94 (MQ=60)

                                                      CTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGC                                         <  SRR4302536.944102/94‑1 (MQ=60)

                                                      CTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGC                                         >  SRR4302536.5119011/1‑94 (MQ=60)

                                                      CTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGC                                         >  SRR4302536.6780788/1‑94 (MQ=60)

                                                      CTGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGGTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGC                                         >  SRR4302536.6770382/1‑94 (MQ=60)

                                                       TGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCG                                        <  SRR4302536.2634065/94‑1 (MQ=60)

                                                       TGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCG                                        >  SRR4302536.6461272/1‑94 (MQ=60)

                                                       TGAAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCG                                        >  SRR4302536.2395543/1‑94 (MQ=60)

                                                         AAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGC                                      >  SRR4302536.3151926/1‑94 (MQ=60)

                                                         AAACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGC                                      >  SRR4302536.2564805/1‑94 (MQ=60)

                                                          AACCGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCA                                     >  SRR4302536.4688860/1‑94 (MQ=60)

                                                             CGTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAG                                  >  SRR4302536.451126/1‑94 (MQ=60)

                                                              GTGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGA                                 <  SRR4302536.1041556/94‑1 (MQ=60)

                                                               TGATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAT                                <  SRR4302536.3715687/94‑1 (MQ=60)

                                                                GATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATT                               <  SRR4302536.1104825/94‑1 (MQ=60)

                                                                GATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATT                               <  SRR4302536.2168533/94‑1 (MQ=60)

                                                                GATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATT                               >  SRR4302536.565442/1‑94 (MQ=60)

                                                                 ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGGACAGATTC                              >  SRR4302536.3386948/1‑94 (MQ=60)

                                                                 ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC                              <  SRR4302536.6402319/94‑1 (MQ=60)

                                                                 ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC                              <  SRR4302536.3699039/94‑1 (MQ=60)

                                                                 ATTAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC                              >  SRR4302536.3720689/1‑94 (MQ=60)

                                                                   TAACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGT                            >  SRR4302536.5926228/1‑94 (MQ=60)

                                                                    AACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTC                           <  SRR4302536.3221590/94‑1 (MQ=60)

                                                                     ACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA                          <  SRR4302536.2489645/94‑1 (MQ=60)

                                                                     ACCGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA                          <  SRR4302536.5019044/94‑1 (MQ=60)

                                                                     ACCGTGATGCTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA                          <  SRR4302536.5511871/94‑1 (MQ=60)

                                                                       CGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGC                        <  SRR4302536.2322558/94‑1 (MQ=60)

                                                                       CGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGC                        >  SRR4302536.1959327/1‑94 (MQ=60)

                                                                       CGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGC                        >  SRR4302536.1925315/1‑94 (MQ=60)

                                                                       CGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGC                        >  SRR4302536.1841966/1‑94 (MQ=60)

                                                                       CGTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGC                        >  SRR4302536.4852593/1‑94 (MQ=60)

                                                                        GTGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT                       <  SRR4302536.5008517/94‑1 (MQ=60)

                                                                         TGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTT                      <  SRR4302536.442891/94‑1 (MQ=60)

                                                                         TGATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTAAGCCT                      >  SRR4302536.545140/1‑94 (MQ=60)

                                                                          GATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTG                     <  SRR4302536.707624/94‑1 (MQ=60)

                                                                          GATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTG                     <  SRR4302536.6522465/94‑1 (MQ=60)

                                                                           ATGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGC                    >  SRR4302536.1795879/1‑94 (MQ=60)

                                                                            TGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT                   >  SRR4302536.3156923/1‑94 (MQ=60)

                                                                            TGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT                   >  SRR4302536.179698/1‑94 (MQ=60)

                                                                            TGGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCT                   <  SRR4302536.4736034/94‑1 (MQ=60)

                                                                             GGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTG                  >  SRR4302536.1230606/1‑94 (MQ=60)

                                                                             GGTCAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTG                  <  SRR4302536.3405956/94‑1 (MQ=60)

                                                                              GTCAGGCAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCACCTTGCTGG                 >  SRR4302536.5564409/1‑94 (MQ=60)

                                                                                CAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTA               >  SRR4302536.2783679/1‑94 (MQ=60)

                                                                                CAGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTA               >  SRR4302536.1991377/1‑94 (MQ=60)

                                                                                 AGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAT              >  SRR4302536.1547615/1‑94 (MQ=60)

                                                                                 AGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAT              <  SRR4302536.5241548/94‑1 (MQ=60)

                                                                                 AGGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAT              >  SRR4302536.3327720/1‑94 (MQ=60)

                                                                                  GGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATG             <  SRR4302536.4661774/94‑1 (MQ=60)

                                                                                  GGAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATG             <  SRR4302536.152170/94‑1 (MQ=60)

                                                                                   GAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGC            >  SRR4302536.2583641/1‑94 (MQ=60)

                                                                                   GAAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGC            >  SRR4302536.1903769/1‑94 (MQ=60)

                                                                                    AAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCG           <  SRR4302536.2661823/94‑1 (MQ=60)

                                                                                    AAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCG           <  SRR4302536.282857/94‑1 (MQ=60)

                                                                                    AAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCG           <  SRR4302536.3304348/94‑1 (MQ=60)

                                                                                    AAGAGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGCTGCGCGTGGTTCTGCGGCACCGATTCGTCAGCTTGCTGGTATGCG           >  SRR4302536.5900626/1‑94 (MQ=60)

                                                                                       AGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGG        <  SRR4302536.2068776/94‑1 (MQ=60)

                                                                                       AGAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGCTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGG        >  SRR4302536.1551132/1‑94 (MQ=60)

                                                                                        GAAGCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGT       <  SRR4302536.1341018/94‑1 (MQ=60)

                                                                                           GCGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTG    <  SRR4302536.1755561/94‑1 (MQ=60)

                                                                                            CGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGA   >  SRR4302536.3669174/1‑94 (MQ=60)

                                                                                            CGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGA   >  SRR4302536.3588144/1‑94 (MQ=60)

                                                                                            CGGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGA   >  SRR4302536.3209559/1‑94 (MQ=60)

                                                                                             GGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGAT  >  SRR4302536.2990765/1‑94 (MQ=60)

                                                                                             GGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGAT  >  SRR4302536.297260/1‑94 (MQ=60)

                                                                                             GGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGAT  >  SRR4302536.4581083/1‑94 (MQ=60)

TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGAT  >  NC_000913/4184981‑4185167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`