Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1475	266.7	13469680	98.2%	13227225	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,476,619	A→G	V91A (GTG→GCG)	b4256 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,476,619	0	A	G	100.0%	894.3 / NA	272	V91A (GTG→GCG)	b4256	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (118/154); total (118/154)

Only 100 of 282 total aligned reads displayed.

ATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAA  >  NC_000913/4476529‑4476708

 tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCtt                                                                                        >  2:2441935/1‑93 (MQ=255)

 tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCtt                                                                                        <  2:222266/93‑1 (MQ=255)

 tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCtt                                                                                        >  1:4149504/1‑93 (MQ=255)

      cATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACaa                                                                                   <  1:6492263/93‑1 (MQ=255)

      cATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACaa                                                                                   >  2:3826724/1‑93 (MQ=255)

       aTAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCACCATCCGCGCTTCACAAt                                                                                  >  1:3166344/1‑93 (MQ=255)

       aTAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAAt                                                                                  <  2:937537/93‑1 (MQ=255)

        tAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATc                                                                                 >  2:4152547/1‑93 (MQ=255)

        tAAACAAAACGTACGTTGTTAATGTTCGAATGCCAGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATc                                                                                 <  2:5441853/93‑1 (MQ=255)

        aaaaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATc                                                                                 <  1:5871717/92‑1 (MQ=255)

         aaaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCg                                                                                <  2:1825195/93‑1 (MQ=255)

         aaaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCg                                                                                >  2:1962486/1‑93 (MQ=255)

          aaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGa                                                                               <  1:1456379/93‑1 (MQ=255)

          aaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGa                                                                               >  2:2144230/1‑93 (MQ=255)

           aCAAAACTTCCTTTTTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGAc                                                                              <  1:8338/93‑1 (MQ=255)

           aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGAc                                                                              <  2:4430874/93‑1 (MQ=255)

           aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGAc                                                                              <  1:5052312/93‑1 (MQ=255)

           aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGAc                                                                              >  1:3460190/1‑93 (MQ=255)

            cAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACa                                                                             <  1:5577856/93‑1 (MQ=255)

            cAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACa                                                                             <  2:2693189/93‑1 (MQ=255)

             aaaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAt                                                                            <  2:5204729/93‑1 (MQ=255)

             aaaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAt                                                                            <  1:2236390/93‑1 (MQ=255)

             aaaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAt                                                                            >  1:1958575/1‑93 (MQ=255)

             aaaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAt                                                                            <  1:1802423/93‑1 (MQ=255)

                acttacgtTGTTAATGTTCGATGGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGc                                                                         <  1:59144/90‑1 (MQ=255)

                    acgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGt                                                                     <  2:2812490/93‑1 (MQ=255)

                      gttgttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGc                                                                   <  1:2179254/93‑1 (MQ=255)

                      gttgttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGc                                                                   >  2:4712311/1‑93 (MQ=255)

                       ttgttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCa                                                                  >  2:2600013/1‑93 (MQ=255)

                         tttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGc                                                                <  1:5758301/92‑1 (MQ=255)

                         gttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGc                                                                >  2:3409522/1‑93 (MQ=255)

                          ttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGcc                                                               >  2:1148712/1‑93 (MQ=255)

                          ttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGcc                                                               <  1:2656325/93‑1 (MQ=255)

                             aTGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAg                                                            >  1:2947666/1‑93 (MQ=255)

                             aTGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAg                                                            >  2:2876584/1‑93 (MQ=255)

                               gTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAgcg                                                          >  1:1074901/1‑93 (MQ=255)

                               gTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAgcg                                                          >  1:2832326/1‑93 (MQ=255)

                                 tCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCa                                                        >  1:288382/1‑93 (MQ=255)

                                  cGAATGCCCGGGAGTTGAACACGCGGGTATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCAt                                                       <  1:4622910/93‑1 (MQ=255)

                                  cGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCAt                                                       >  2:5458548/1‑93 (MQ=255)

                                  cGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCAt                                                       <  2:1434540/93‑1 (MQ=255)

                                   gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGGCAAGCGCATa                                                      >  2:4823118/1‑93 (MQ=255)

                                    aaTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAg                                                     >  2:3691684/1‑93 (MQ=255)

                                    aaTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAg                                                     <  1:6702722/93‑1 (MQ=255)

                                    aaTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAg                                                     <  2:1649223/93‑1 (MQ=255)

                                     aTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGt                                                    <  2:864731/93‑1 (MQ=255)

                                     aTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGt                                                    <  2:5944870/93‑1 (MQ=255)

                                     aTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGt                                                    <  2:403012/93‑1 (MQ=255)

                                      tGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTc                                                   <  1:1605208/93‑1 (MQ=255)

                                      tGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTc                                                   >  2:4993494/1‑93 (MQ=255)

                                        cccGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGa                                                 <  1:212743/93‑1 (MQ=255)

                                          cgcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGata                                               <  2:1552702/93‑1 (MQ=255)

                                          cgcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGata                                               <  1:515743/93‑1 (MQ=255)

                                               gTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTc                                          >  2:5301458/1‑93 (MQ=255)

                                                   aaCACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAg                                      <  2:1668624/93‑1 (MQ=255)

                                                    acacGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGc                                     >  2:5601475/1‑93 (MQ=255)

                                                    acacGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGc                                     <  2:6065032/93‑1 (MQ=255)

                                                      acGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGccc                                   >  2:6202416/1‑93 (MQ=255)

                                                       cgcgGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCa                                  >  2:2014043/1‑93 (MQ=255)

                                                        gcgGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGTCCaa                                 >  2:3521389/1‑93 (MQ=255)

                                                          gggCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAt                               >  1:4945612/1‑93 (MQ=255)

                                                          gggCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAt                               >  1:3361090/1‑93 (MQ=255)

                                                               tttttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCa                          >  2:4860537/1‑93 (MQ=255)

                                                               tttttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCa                          <  2:45187/93‑1 (MQ=255)

                                                               tttttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCa                          >  1:5345666/1‑93 (MQ=255)

                                                               tttttttAGAGTGCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCa                          <  1:4552280/93‑1 (MQ=255)

                                                                ttttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCAt                         <  2:1334854/93‑1 (MQ=255)

                                                                 tttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATa                        <  1:1062493/93‑1 (MQ=255)

                                                                 tttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATa                        <  1:5807598/93‑1 (MQ=255)

                                                                  ttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATaa                       <  1:3426022/93‑1 (MQ=255)

                                                                  ttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATaa                       <  1:3279857/93‑1 (MQ=255)

                                                                   tttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATaaa                      <  2:2950906/93‑1 (MQ=255)

                                                                   tttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATaaa                      <  1:1259508/93‑1 (MQ=255)

                                                                    ttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAg                     <  2:4068131/93‑1 (MQ=255)

                                                                    ttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAg                     <  2:3621145/93‑1 (MQ=255)

                                                                    ttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAg                     >  1:5636247/1‑93 (MQ=255)

                                                                     tAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAgc                    <  1:4730852/93‑1 (MQ=255)

                                                                     tAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAgc                    <  1:1191986/93‑1 (MQ=255)

                                                                        agTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCa                 >  1:1692590/1‑93 (MQ=255)

                                                                        agTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCa                 <  2:1177038/93‑1 (MQ=255)

                                                                         gTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCaa                <  2:228811/93‑1 (MQ=255)

                                                                         gTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCaa                <  2:4265757/93‑1 (MQ=255)

                                                                         gTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCaa                <  1:993953/93‑1 (MQ=255)

                                                                          ttCGCTCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAAt               <  1:3751283/93‑1 (MQ=255)

                                                                          ttCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAAt               <  1:4032987/93‑1 (MQ=255)

                                                                           tCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATg              >  2:5718569/1‑93 (MQ=255)

                                                                           tCGCGCAACATCCGCGCTTCACAAGCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATg              <  1:1115230/93‑1 (MQ=255)

                                                                             gcgcAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGc            <  2:3668436/93‑1 (MQ=255)

                                                                              cgcAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCt           <  2:6620416/93‑1 (MQ=255)

                                                                              cgcAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCt           <  2:3941339/93‑1 (MQ=255)

                                                                                cAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTc         >  2:6363885/1‑93 (MQ=255)

                                                                                 agcATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAATTGCTCATAAAGCGCAATGGCTTcc        <  2:6725278/91‑1 (MQ=255)

                                                                                  aCATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCt       >  1:5459680/1‑93 (MQ=255)

                                                                                  aCATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCt       >  1:4475746/1‑93 (MQ=255)

                                                                                  aCATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCt       <  1:1416141/93‑1 (MQ=255)

                                                                                    aTCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCttt     >  1:5187406/1‑93 (MQ=255)

                                                                                    aTCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCttt     <  1:5694866/93‑1 (MQ=255)

                                                                                     tCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTa    >  1:6072774/1‑93 (MQ=255)

                                                                                     tCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTa    >  2:317542/1‑93 (MQ=255)

                                                                                       cgcgCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTaaa  >  1:245181/1‑93 (MQ=255)

ATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAA  >  NC_000913/4476529‑4476708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAG  >  NC_000913/4476528‑4476712

CATCCGGCATAAACTAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCT                                                                                             >  SRR4302536.6800591/1‑94 (MQ=60)

CATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCT                                                                                             <  SRR4302536.5675809/94‑1 (MQ=60)

 ATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTT                                                                                            >  SRR4302536.502778/1‑94 (MQ=60)

 ATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTT                                                                                            >  SRR4302536.4272640/1‑94 (MQ=60)

   CCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCA                                                                                          >  SRR4302536.5454791/1‑94 (MQ=60)

    CGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCAA                                                                                         >  SRR4302536.1707691/1‑94 (MQ=60)

       CATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCACCATCCGCGCTTCACAAT                                                                                      >  SRR4302536.3259108/1‑94 (MQ=60)

       CATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAAT                                                                                      >  SRR4302536.4446560/1‑94 (MQ=60)

       CATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAAT                                                                                      <  SRR4302536.6685838/94‑1 (MQ=60)

       CATAAACAAAACGTACGTTGTTAATGTTCGAACGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAAT                                                                                      <  SRR4302536.347710/94‑1 (MQ=60)

        ATAAACAAAACGTCCGTTGTTACTGTTCGAATCCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATC                                                                                     <  SRR4302536.4463270/94‑1 (MQ=60)

        ATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATC                                                                                     <  SRR4302536.3430725/94‑1 (MQ=60)

        ATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATC                                                                                     >  SRR4302536.5778739/1‑94 (MQ=60)

        ATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATC                                                                                     <  SRR4302536.5334153/94‑1 (MQ=60)

         TAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGGAACATCCGCGCTTCACAATCG                                                                                    >  SRR4302536.1820744/1‑94 (MQ=60)

         AAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCG                                                                                    <  SRR4302536.6046665/94‑1 (MQ=60)

          AAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGA                                                                                   <  SRR4302536.1512151/94‑1 (MQ=60)

          AAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGA                                                                                   >  SRR4302536.4247396/1‑94 (MQ=60)

          AAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGA                                                                                   >  SRR4302536.4231535/1‑94 (MQ=60)

          AAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGA                                                                                   >  SRR4302536.2299769/1‑94 (MQ=60)

           AACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGAC                                                                                  >  SRR4302536.3563288/1‑94 (MQ=60)

           AACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGAC                                                                                  <  SRR4302536.1499503/94‑1 (MQ=60)

           AACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGAC                                                                                  <  SRR4302536.3043543/94‑1 (MQ=60)

            acaaaacttccttttTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACA                                                                                 <  SRR4302536.8568/79‑1 (MQ=60)

            ACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACA                                                                                 <  SRR4302536.6172207/94‑1 (MQ=60)

            ACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACA                                                                                 <  SRR4302536.5203687/94‑1 (MQ=60)

            ACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACA                                                                                 <  SRR4302536.5118448/94‑1 (MQ=60)

            ACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACA                                                                                 >  SRR4302536.5904524/1‑94 (MQ=60)

             CAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAT                                                                                >  SRR4302536.2017464/1‑94 (MQ=60)

             CAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAT                                                                                <  SRR4302536.5743868/94‑1 (MQ=60)

             AAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAT                                                                                <  SRR4302536.4741545/94‑1 (MQ=60)

              AAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATG                                                                               >  SRR4302536.4684361/1‑94 (MQ=60)

              AAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATG                                                                               >  SRR4302536.5083029/1‑94 (MQ=60)

              AAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATG                                                                               <  SRR4302536.1856831/94‑1 (MQ=60)

              AAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATG                                                                               <  SRR4302536.2304040/94‑1 (MQ=60)

                AACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGC                                                                             >  SRR4302536.3062572/1‑94 (MQ=60)

                 ACTTACGTTGTTAATGTTCGATGGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCC                                                                            <  SRR4302536.60779/94‑1 (MQ=60)

                   GTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCG                                                                          <  SRR4302536.1100231/94‑1 (MQ=60)

                    TACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACCCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCAGAATCGACATGGCCCGG                                                                         >  SRR4302536.1284941/1‑94 (MQ=60)

                     ACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTG                                                                        >  SRR4302536.403168/1‑94 (MQ=60)

                     ACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTG                                                                        <  SRR4302536.5289095/94‑1 (MQ=60)

                      CGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGC                                                                       >  SRR4302536.1365553/1‑94 (MQ=60)

                       GTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCA                                                                      <  SRR4302536.2244928/94‑1 (MQ=60)

                       GTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCA                                                                      >  SRR4302536.3400058/1‑94 (MQ=60)

                       GTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCA                                                                      >  SRR4302536.2151240/1‑94 (MQ=60)

                       GTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCA                                                                      >  SRR4302536.2899517/1‑94 (MQ=60)

                         TGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGC                                                                    >  SRR4302536.1157465/1‑94 (MQ=60)

                          TTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCC                                                                   <  SRR4302536.5929607/94‑1 (MQ=60)

                          GTGAAGGTTCGAATGCCCGCGAGTTGACCTCGCGTTCATGTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCC                                                                   <  SRR4302536.2328889/94‑1 (MQ=60)

                           TTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCA                                                                  >  SRR4302536.3176458/1‑94 (MQ=60)

                           TTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCA                                                                  <  SRR4302536.2735836/94‑1 (MQ=60)

                           TTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCA                                                                  >  SRR4302536.3806343/1‑94 (MQ=60)

                           TTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCA                                                                  <  SRR4302536.6926266/94‑1 (MQ=60)

                           TTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCA                                                                  <  SRR4302536.957557/94‑1 (MQ=60)

                           TTAATGTTCGAAGGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCA                                                                  <  SRR4302536.5878324/94‑1 (MQ=60)

                            TAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAA                                                                 <  SRR4302536.2266297/94‑1 (MQ=60)

                            TAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAA                                                                 <  SRR4302536.1277869/94‑1 (MQ=60)

                             AATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAG                                                                <  SRR4302536.5972812/94‑1 (MQ=60)

                             AATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAG                                                                >  SRR4302536.3034559/1‑94 (MQ=60)

                               TGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCG                                                              >  SRR4302536.2916164/1‑94 (MQ=60)

                               TGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCG                                                              >  SRR4302536.1107074/1‑94 (MQ=60)

                                 TTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCA                                                            >  SRR4302536.296049/1‑94 (MQ=60)

                                  TCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTTGCCCAACATCTTCGCTTCACAATCGACATcccccgcgcagccaataacat                                                           >  SRR4302536.6577301/1‑73 (MQ=60)

                                   CGAATGCCCGGGAGTTGAACACGCGGGTATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATA                                                          <  SRR4302536.4761828/94‑1 (MQ=60)

                                   CGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCCTA                                                          >  SRR4302536.1940339/1‑94 (MQ=60)

                                   CGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATA                                                          >  SRR4302536.5991682/1‑94 (MQ=60)

                                    GAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAG                                                         >  SRR4302536.1251928/1‑94 (MQ=60)

                                    GAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAG                                                         >  SRR4302536.1458903/1‑94 (MQ=60)

                                    GAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAG                                                         <  SRR4302536.4404510/94‑1 (MQ=60)

                                    GAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAG                                                         <  SRR4302536.1902651/94‑1 (MQ=60)

                                     AATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGT                                                        <  SRR4302536.6901787/94‑1 (MQ=60)

                                       TGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCG                                                      <  SRR4302536.1652047/94‑1 (MQ=60)

                                        GCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGA                                                     >  SRR4302536.6219859/1‑94 (MQ=60)

                                         CCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGAT                                                    <  SRR4302536.333009/94‑1 (MQ=60)

                                         CCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGAT                                                    >  SRR4302536.2707402/1‑94 (MQ=60)

                                         CCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGAT                                                    <  SRR4302536.218378/94‑1 (MQ=60)

                                          CCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATA                                                   <  SRR4302536.1130492/94‑1 (MQ=60)

                                           CGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATAT                                                  <  SRR4302536.528975/94‑1 (MQ=60)

                                           CGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATAT                                                  >  SRR4302536.51238/1‑94 (MQ=60)

                                           CGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCACGCTTCACAATCGACATGGCCCTTGCAGCCAAGCGCATAGTCGATAT                                                  <  SRR4302536.5528893/94‑1 (MQ=60)

                                            GCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATG                                                 >  SRR4302536.3025877/1‑94 (MQ=60)

                                             CGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGC                                                >  SRR4302536.480660/1‑94 (MQ=60)

                                                GTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCA                                             <  SRR4302536.956062/94‑1 (MQ=60)

                                                GTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCA                                             >  SRR4302536.6548174/1‑94 (MQ=60)

                                                   GAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAG                                          <  SRR4302536.2980853/94‑1 (MQ=60)

                                                    AACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGC                                         >  SRR4302536.5929984/1‑94 (MQ=60)

                                                     ACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCC                                        <  SRR4302536.153251/94‑1 (MQ=60)

                                                       ACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCA                                      <  SRR4302536.1128050/94‑1 (MQ=60)

                                                        CGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAA                                     >  SRR4302536.780498/1‑94 (MQ=60)

                                                          CGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAT                                   >  SRR4302536.3460881/1‑94 (MQ=60)

                                                          CGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAT                                   >  SRR4302536.5094236/1‑94 (MQ=60)

                                                          CGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAT                                   <  SRR4302536.6883371/94‑1 (MQ=60)

                                                           GGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATG                                  <  SRR4302536.4763146/94‑1 (MQ=60)

                                                             GCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCT                                <  SRR4302536.3280118/94‑1 (MQ=60)

                                                              CATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTC                               <  SRR4302536.246417/94‑1 (MQ=60)

                                                               ATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCA                              <  SRR4302536.1164446/94‑1 (MQ=60)

                                                               ATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCA                              >  SRR4302536.5505303/1‑94 (MQ=60)

                                                                TTTTTTTAGAGTGCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCAT                             <  SRR4302536.4688821/94‑1 (MQ=60)

                                                                  TTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAA                           <  SRR4302536.1094270/94‑1 (MQ=60)

                                                                  TTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAA                           <  SRR4302536.5980570/94‑1 (MQ=60)

                                                                   TTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAA                          <  SRR4302536.3376285/94‑1 (MQ=60)

                                                                   TTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAA                          <  SRR4302536.3527989/94‑1 (MQ=60)

                                                                    TTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAG                         <  SRR4302536.1297282/94‑1 (MQ=60)

                                                                    TTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAG                         <  SRR4302536.6078266/94‑1 (MQ=60)

                                                                    TTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAG                         >  SRR4302536.5803683/1‑94 (MQ=60)

                                                                    TTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAG                         <  SRR4302536.5660907/94‑1 (MQ=60)

                                                                      TAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCG                       <  SRR4302536.1227826/94‑1 (MQ=60)

                                                                      TAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCG                       <  SRR4302536.4873209/94‑1 (MQ=60)

                                                                      TAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCG                       <  SRR4302536.1680150/94‑1 (MQ=60)

                                                                       AGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGC                      >  SRR4302536.2207430/1‑94 (MQ=60)

                                                                       AGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGC                      <  SRR4302536.2754995/94‑1 (MQ=60)

                                                                        GAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCA                     >  SRR4302536.1741598/1‑94 (MQ=60)

                                                                         AGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAA                    >  SRR4302536.2408228/1‑94 (MQ=60)

                                                                          GTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAAT                   <  SRR4302536.1023280/94‑1 (MQ=60)

                                                                          GTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAAT                   <  SRR4302536.2540656/94‑1 (MQ=60)

                                                                           TTCGCTCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATG                  <  SRR4302536.3863388/94‑1 (MQ=60)

                                                                           TTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATG                  <  SRR4302536.4152595/94‑1 (MQ=60)

                                                                           TTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATG                  <  SRR4302536.5993665/94‑1 (MQ=60)

                                                                            TCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGG                 <  SRR4302536.1792067/94‑1 (MQ=60)

                                                                            TCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGG                 >  SRR4302536.2086086/1‑94 (MQ=60)

                                                                            TCGCGCAACATCCGCGCTTCACAAGCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGG                 <  SRR4302536.1148701/94‑1 (MQ=60)

                                                                             CGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGC                >  SRR4302536.3815551/1‑94 (MQ=60)

                                                                               CGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTT              >  SRR4302536.5568927/1‑94 (MQ=60)

                                                                               CGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTT              <  SRR4302536.5490338/94‑1 (MQ=60)

                                                                                 CAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCC            >  SRR4302536.2939931/1‑94 (MQ=60)

                                                                                 CAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCC            >  SRR4302536.5648845/1‑94 (MQ=60)

                                                                                 CAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCC            <  SRR4302536.5283238/94‑1 (MQ=60)

                                                                                  AACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCT           >  SRR4302536.5622899/1‑94 (MQ=60)

                                                                                  AACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCT           >  SRR4302536.1371230/1‑94 (MQ=60)

                                                                                  AACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCT           >  SRR4302536.4610201/1‑94 (MQ=60)

                                                                                   ACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTT          <  SRR4302536.3501882/94‑1 (MQ=60)

                                                                                   ACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTT          <  SRR4302536.1458235/94‑1 (MQ=60)

                                                                                   ACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTT          <  SRR4302536.5853085/94‑1 (MQ=60)

                                                                                    CATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTT         >  SRR4302536.4013297/1‑94 (MQ=60)

                                                                                    CATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTT         >  SRR4302536.5342128/1‑94 (MQ=60)

                                                                                     ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302536.4692347/1‑94 (MQ=60)

                                                                                     ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302536.6061577/1‑94 (MQ=60)

                                                                                     ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302536.6253928/1‑94 (MQ=60)

                                                                                     ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        <  SRR4302536.5864193/94‑1 (MQ=60)

                                                                                     ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302536.3531285/1‑94 (MQ=60)

                                                                                       CCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAA      >  SRR4302536.251717/1‑94 (MQ=60)

                                                                                       CCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAA      <  SRR4302536.5784256/94‑1 (MQ=60)

                                                                                         GCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAA    <  SRR4302536.293663/94‑1 (MQ=60)

                                                                                          CGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAA   <  SRR4302536.4308907/94‑1 (MQ=60)

                                                                                           GCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAG  <  SRR4302536.1736447/94‑1 (MQ=60)

                                                                                           GCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAG  <  SRR4302536.1499778/94‑1 (MQ=60)

                                                                                           GCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAG  <  SRR4302536.5525181/94‑1 (MQ=60)

                                                                                           GCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAG  <  SRR4302536.4999192/94‑1 (MQ=60)

CATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAG  >  NC_000913/4476528‑4476712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`