Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,539,774 G→A A578T (GCC→ACC)  feoB → ferrous iron transport protein B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,539,7740GA99.5% 1424.8 / NA 401A578T (GCC→ACC) feoBferrous iron transport protein B
Reads supporting (aligned to +/- strand):  ref base G (0/1);  major base A (194/204);  minor base C (0/2);  total (194/207)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 410 total aligned reads displayed.

GCGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTGCCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTT  >  NC_000913/3539684‑3539863
                                                                                          |                                                                                         
 cgtccgtcAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCa                                                                                        <  1:9520188/93‑1 (MQ=255)
 cgtccgtcAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCa                                                                                        <  1:6800992/93‑1 (MQ=255)
    ccgtcAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATgg                                                                                     >  1:1567010/1‑93 (MQ=255)
    ccgtcAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATgg                                                                                     <  1:378253/93‑1 (MQ=255)
      gtcAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCg                                                                                   >  1:8602459/1‑93 (MQ=255)
        tacccGAGTGATCTGCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGaa                                                                                 <  2:7389576/90‑1 (MQ=255)
        cAGCCGGGTGGTCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGaa                                                                                 <  2:4839376/93‑1 (MQ=255)
         aGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGaaa                                                                                <  2:2280057/93‑1 (MQ=255)
         aGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGaaa                                                                                <  2:1693209/93‑1 (MQ=255)
         aGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGaaa                                                                                <  1:7844018/93‑1 (MQ=255)
          gCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAaag                                                                               >  1:6244649/1‑93 (MQ=255)
          gCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAaag                                                                               >  1:4701258/1‑93 (MQ=255)
            cGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAaagaa                                                                             >  2:9471416/1‑93 (MQ=255)
            cGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAaagaa                                                                             >  2:8109043/1‑93 (MQ=255)
             gggTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAAATGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAaagaag                                                                            <  2:1174452/93‑1 (MQ=255)
              ggTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGt                                                                           <  2:4285699/93‑1 (MQ=255)
                tcaTCACCGCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTCCCATGGCGAAAGAAGTgg                                                                         <  1:665269/91‑1 (MQ=255)
                  aTCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTa                                                                       <  1:7127365/93‑1 (MQ=255)
                   tcgccccGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAg                                                                      <  2:9284976/90‑1 (MQ=255)
                     aCCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTg                                                                    >  1:4497796/1‑93 (MQ=255)
                      ccccGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTgg                                                                   >  2:6330167/1‑93 (MQ=255)
                       cccGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTggg                                                                  >  1:1496431/1‑93 (MQ=255)
                        ccGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGGAGTGGGt                                                                 >  1:4782911/1‑93 (MQ=255)
                         cGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTa                                                                >  1:5508556/1‑93 (MQ=255)
                            tCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGc                                                             >  1:9098789/1‑93 (MQ=255)
                             cTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACAGTTGGCCTGTTTACAGGTACCCTGGCGAAAGAAGTGGTAGAGGGTACGCt                                                            >  2:7071535/1‑93 (MQ=255)
                              ttCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTc                                                           >  1:563055/1‑93 (MQ=255)
                               tCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCa                                                          >  1:5237959/1‑93 (MQ=255)
                                cAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCaa                                                         <  1:104410/93‑1 (MQ=255)
                                 aaGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTGCCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAac                                                        <  1:9179802/93‑1 (MQ=255)
                                 aaGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAac                                                        >  2:2463333/1‑93 (MQ=255)
                                 aaGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAac                                                        <  2:4929013/93‑1 (MQ=255)
                                  aGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAaca                                                       <  1:8726500/93‑1 (MQ=255)
                                   gCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAacac                                                      >  2:8860149/1‑93 (MQ=255)
                                   gCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAacac                                                      >  1:7432631/1‑93 (MQ=255)
                                     cAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACAccc                                                    >  1:9922555/1‑93 (MQ=255)
                                     cAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACAccc                                                    <  1:3635289/93‑1 (MQ=255)
                                     cAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTAAacacac                                                    >  2:9015786/1‑91 (MQ=255)
                                      aaTTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCct                                                   >  1:6138785/1‑93 (MQ=255)
                                      aaTTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCct                                                   >  2:1306448/1‑93 (MQ=255)
                                        ttGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCctct                                                 >  2:9409218/1‑93 (MQ=255)
                                         tGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTa                                                <  1:9782026/93‑1 (MQ=255)
                                         tGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTa                                                <  2:3274702/93‑1 (MQ=255)
                                           gCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTcca                                              >  1:2106719/1‑93 (MQ=255)
                                           gCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTaca                                              <  2:7729254/93‑1 (MQ=255)
                                            cGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTacac                                             <  2:975222/93‑1 (MQ=255)
                                            cGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTacac                                             <  2:5818039/93‑1 (MQ=255)
                                             gTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACAcc                                            >  2:2676430/1‑93 (MQ=255)
                                             gTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACAcc                                            >  1:5028095/1‑93 (MQ=255)
                                              tGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCg                                           >  2:6098006/1‑93 (MQ=255)
                                              tGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCg                                           >  2:3432689/1‑93 (MQ=255)
                                              tGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCg                                           >  1:5999852/1‑93 (MQ=255)
                                                cATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCa                                         <  2:8224205/93‑1 (MQ=255)
                                                  tGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGa                                       >  2:7763922/1‑93 (MQ=255)
                                                  tGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGa                                       >  1:704026/1‑93 (MQ=255)
                                                   gAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGAACGCTCAACACCCTCTACACCGCAGaa                                      >  1:5482225/1‑93 (MQ=255)
                                                      gATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAat                                   <  1:7543065/93‑1 (MQ=255)
                                                       aTAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAata                                  <  2:6714641/93‑1 (MQ=255)
                                                       aTAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAata                                  <  2:3945353/93‑1 (MQ=255)
                                                       aTAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAata                                  <  1:694040/93‑1 (MQ=255)
                                                       aTAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAata                                  <  1:6345236/93‑1 (MQ=255)
                                                       aTAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAata                                  >  2:283891/1‑93 (MQ=255)
                                                        tAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGACAatat                                 >  1:4002689/1‑93 (MQ=255)
                                                        tAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAatat                                 <  1:4095020/93‑1 (MQ=255)
                                                          aCTGGCAGGCAACGGTTGTCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTc                               <  2:6597534/93‑1 (MQ=255)
                                                          aCTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTc                               <  2:5607314/93‑1 (MQ=255)
                                                           cTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCa                              <  2:2019318/93‑1 (MQ=255)
                                                           cTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCa                              >  1:2918752/1‑93 (MQ=255)
                                                            tGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAg                             <  2:861445/93‑1 (MQ=255)
                                                            tGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAg                             >  2:8482238/1‑93 (MQ=255)
                                                            tGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAg                             <  1:2366424/93‑1 (MQ=255)
                                                              gcaggcaACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGa                           <  1:3169483/93‑1 (MQ=255)
                                                              gcaggcaACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGa                           <  2:3548662/93‑1 (MQ=255)
                                                              gcaggcaACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGa                           <  1:6365901/93‑1 (MQ=255)
                                                              gcaggcaACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGAAGAAAATATTCAGGa                           >  1:8084257/1‑93 (MQ=255)
                                                               caggcaACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGAc                          <  2:7638645/93‑1 (MQ=255)
                                                                aggcaACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACg                         >  1:7781663/1‑93 (MQ=255)
                                                                 ggcaACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGa                        <  2:5437239/93‑1 (MQ=255)
                                                                  gcaACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGGAGTGGGAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGaa                       >  2:5084105/1‑93 (MQ=255)
                                                                  gcaACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGaa                       >  1:1896380/1‑93 (MQ=255)
                                                                    aaCGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAaga                     <  1:6443722/93‑1 (MQ=255)
                                                                    aaCGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAaga                     <  1:10002665/93‑1 (MQ=255)
                                                                      cGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGt                   >  1:140319/1‑93 (MQ=255)
                                                                        gTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTc                 <  2:3099446/93‑1 (MQ=255)
                                                                         ttGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCa                <  1:2543381/93‑1 (MQ=255)
                                                                         ttGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCa                >  2:4087043/1‑93 (MQ=255)
                                                                         ttGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCa                <  2:8361132/93‑1 (MQ=255)
                                                                          tGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCaa               <  1:8340320/93‑1 (MQ=255)
                                                                            gCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATc             <  2:7970105/93‑1 (MQ=255)
                                                                            gCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATc             <  1:9315762/93‑1 (MQ=255)
                                                                            gCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATc             <  1:4413142/93‑1 (MQ=255)
                                                                             ccTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATcc            <  1:2603515/93‑1 (MQ=255)
                                                                             ccTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATcc            <  1:5135958/93‑1 (MQ=255)
                                                                               tGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCgg          >  1:886917/1‑93 (MQ=255)
                                                                               tGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCgg          >  2:467170/1‑93 (MQ=255)
                                                                                gTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGc         >  2:10012492/1‑93 (MQ=255)
                                                                                gTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGc         >  2:7123748/1‑93 (MQ=255)
                                                                                 tttACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCa        >  2:9923258/1‑93 (MQ=255)
                                                                                 tttACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCa        <  1:9623864/93‑1 (MQ=255)
                                                                                     cAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAAt    <  2:1455923/93‑1 (MQ=255)
                                                                                          |                                                                                         
GCGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTGCCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTT  >  NC_000913/3539684‑3539863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 226 total aligned reads displayed.
CTGGCGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTGCCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTTAACC  >  NC_000913/3539681‑3539867
                                                                                             |                                                                                             
CTGGCGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTA                                                                                               >  SRR4302540.688159/1‑94 (MQ=60)
CTGGCGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTA                                                                                               >  SRR4302540.9743505/1‑94 (MQ=60)
   GCGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCA                                                                                            <  SRR4302540.3741125/94‑1 (MQ=60)
    CGTCCGTCAGCCGGGTGATCTCCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCAT                                                                                           <  SRR4302540.6208787/94‑1 (MQ=60)
    CGTCCGTCAGCCGGGTGATCACCGCGGTCTTAAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCAT                                                                                           <  SRR4302540.9182702/94‑1 (MQ=60)
    CGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCAT                                                                                           <  SRR4302540.6876246/94‑1 (MQ=60)
    CGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCAT                                                                                           <  SRR4302540.9632931/94‑1 (MQ=60)
    CGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCAT                                                                                           >  SRR4302540.3432424/1‑94 (MQ=60)
    CCTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCAT                                                                                           <  SRR4302540.7929733/94‑1 (MQ=60)
     GTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATG                                                                                          >  SRR4302540.6698383/1‑94 (MQ=60)
     GTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATG                                                                                          >  SRR4302540.260811/1‑94 (MQ=60)
     GTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATG                                                                                          <  SRR4302540.2329068/94‑1 (MQ=60)
     GTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATG                                                                                          >  SRR4302540.8760272/1‑94 (MQ=60)
      TCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGG                                                                                         >  SRR4302540.1584200/1‑94 (MQ=60)
       CCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGC                                                                                        <  SRR4302540.382166/94‑1 (MQ=60)
        CGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCG                                                                                       >  SRR4302540.8702437/1‑94 (MQ=60)
        CGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGAG                                                                                       >  SRR4302540.2943252/1‑94 (MQ=60)
         GTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGA                                                                                      >  SRR4302540.495074/1‑94 (MQ=60)
         GTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGA                                                                                      >  SRR4302540.3174055/1‑94 (MQ=60)
         GTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGA                                                                                      >  SRR4302540.9753591/1‑94 (MQ=60)
          TCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAA                                                                                     >  SRR4302540.9340892/1‑94 (MQ=60)
            AGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCCTGGCGAAAG                                                                                   >  SRR4302540.2539714/1‑94 (MQ=60)
            AGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAG                                                                                   >  SRR4302540.4751502/1‑94 (MQ=60)
            AGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAG                                                                                   <  SRR4302540.1440564/94‑1 (MQ=60)
            AGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAG                                                                                   >  SRR4302540.9767592/1‑94 (MQ=60)
            AGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAG                                                                                   <  SRR4302540.7935671/94‑1 (MQ=60)
            AGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAG                                                                                   >  SRR4302540.3724028/1‑94 (MQ=60)
            AGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAG                                                                                   >  SRR4302540.6314140/1‑94 (MQ=60)
            AGCCGGGTCATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAG                                                                                   <  SRR4302540.7193740/94‑1 (MQ=60)
              CCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAA                                                                                 <  SRR4302540.7522508/94‑1 (MQ=60)
               CGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAG                                                                                <  SRR4302540.4819311/94‑1 (MQ=60)
               CGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAG                                                                                <  SRR4302540.7358506/94‑1 (MQ=60)
               CGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAG                                                                                >  SRR4302540.4433735/1‑94 (MQ=60)
                GGGTGATCCCCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGT                                                                               <  SRR4302540.6213853/94‑1 (MQ=60)
                GGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGT                                                                               <  SRR4302540.4770870/94‑1 (MQ=60)
                GGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGT                                                                               >  SRR4302540.8991912/1‑94 (MQ=60)
                    GATCCCCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTA                                                                           <  SRR4302540.8903753/94‑1 (MQ=60)
                    GATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTA                                                                           <  SRR4302540.10133975/94‑1 (MQ=60)
                    GATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTA                                                                           <  SRR4302540.5573506/94‑1 (MQ=60)
                     ATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAG                                                                          <  SRR4302540.7206744/94‑1 (MQ=60)
                      TCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGT                                                                         <  SRR4302540.654244/94‑1 (MQ=60)
                      TCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGT                                                                         <  SRR4302540.2609591/94‑1 (MQ=60)
                      TCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGT                                                                         <  SRR4302540.2609593/94‑1 (MQ=60)
                      TCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGT                                                                         <  SRR4302540.75540/94‑1 (MQ=60)
                      TCACCCAGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGG                                                                         >  SRR4302540.7122990/1‑94 (MQ=60)
                       CACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTG                                                                        >  SRR4302540.4546558/1‑94 (MQ=60)
                       CACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTG                                                                        <  SRR4302540.1506488/94‑1 (MQ=60)
                       CACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTG                                                                        >  SRR4302540.213722/1‑94 (MQ=60)
                         CCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGG                                                                      <  SRR4302540.5197607/94‑1 (MQ=60)
                          CCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGCAAGAAGTGGTAGTGGGG                                                                     >  SRR4302540.4833771/1‑94 (MQ=60)
                          CCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGT                                                                     >  SRR4302540.1516268/1‑94 (MQ=60)
                          CCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGT                                                                     <  SRR4302540.7436766/94‑1 (MQ=60)
                          CCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGGAGTGGGT                                                                     >  SRR4302540.4834041/1‑94 (MQ=60)
                          CCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGGGGTAGTGGGT                                                                     >  SRR4302540.8464930/1‑94 (MQ=60)
                           CCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTA                                                                    >  SRR4302540.5569221/1‑94 (MQ=60)
                            CGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGgag                                                                   >  SRR4302540.1538022/1‑91 (MQ=60)
                            CGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTAC                                                                   >  SRR4302540.9636885/1‑94 (MQ=60)
                            CGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTAC                                                                   <  SRR4302540.6033804/94‑1 (MQ=60)
                            CGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTAC                                                                   <  SRR4302540.8843349/94‑1 (MQ=60)
                            CGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTAC                                                                   >  SRR4302540.4541441/1‑94 (MQ=60)
                             GGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACCGGTACCATGGCGAAAGAAGTGGTAGTGGGTACG                                                                  >  SRR4302540.9788100/1‑94 (MQ=60)
                             GGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACG                                                                  <  SRR4302540.5094504/94‑1 (MQ=60)
                              GTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTAGGC                                                                 >  SRR4302540.2474930/1‑94 (MQ=60)
                              GTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGC                                                                 >  SRR4302540.9208113/1‑94 (MQ=60)
                               TCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCT                                                                >  SRR4302540.5179298/1‑94 (MQ=60)
                                CTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTC                                                               >  SRR4302540.569179/1‑94 (MQ=60)
                                CTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTC                                                               >  SRR4302540.6742676/1‑94 (MQ=60)
                                 TTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCA                                                              >  SRR4302540.5295101/1‑94 (MQ=60)
                                 TTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCA                                                              >  SRR4302540.5367133/1‑94 (MQ=60)
                                 TTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCA                                                              >  SRR4302540.6880811/1‑94 (MQ=60)
                                 TTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCA                                                              >  SRR4302540.1001093/1‑94 (MQ=60)
                                 TTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCA                                                              <  SRR4302540.8729901/94‑1 (MQ=60)
                                 TTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCA                                                              >  SRR4302540.8130603/1‑94 (MQ=60)
                                  TCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAA                                                             <  SRR4302540.6766451/94‑1 (MQ=60)
                                   CAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAAC                                                            <  SRR4302540.457976/94‑1 (MQ=60)
                                   CAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAAC                                                            <  SRR4302540.105524/94‑1 (MQ=60)
                                    AAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTGCCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACA                                                           <  SRR4302540.9289904/94‑1 (MQ=60)
                                    AAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACA                                                           <  SRR4302540.8590788/94‑1 (MQ=60)
                                    AAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACA                                                           <  SRR4302540.8335761/94‑1 (MQ=60)
                                     AGCCAATTGGCGTGCATGAAGATCACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGCGGTAGTGGGTACGCTCAACAC                                                          >  SRR4302540.6070930/1‑94 (MQ=60)
                                     AGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACAC                                                          >  SRR4302540.6070929/1‑94 (MQ=60)
                                     AGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACAC                                                          >  SRR4302540.5512136/1‑94 (MQ=60)
                                     AGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACAC                                                          >  SRR4302540.7515434/1‑94 (MQ=60)
                                     AGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACAC                                                          <  SRR4302540.8827840/94‑1 (MQ=60)
                                      GCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACC                                                         >  SRR4302540.2248863/1‑94 (MQ=60)
                                       CCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCC                                                        >  SRR4302540.10038417/1‑94 (MQ=60)
                                       CCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCC                                                        <  SRR4302540.3542962/94‑1 (MQ=60)
                                        CAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCT                                                       >  SRR4302540.8425476/1‑94 (MQ=60)
                                        CAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCT                                                       >  SRR4302540.7020717/1‑94 (MQ=60)
                                        CAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCT                                                       <  SRR4302540.3675084/94‑1 (MQ=60)
                                        CAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCT                                                       >  SRR4302540.6207155/1‑94 (MQ=60)
                                        CAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGGAGTGGGTACGCTCAACACCCT                                                       >  SRR4302540.7020718/1‑94 (MQ=60)
                                         AATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTC                                                      <  SRR4302540.2492591/94‑1 (MQ=60)
                                         AATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTC                                                      >  SRR4302540.10008464/1‑94 (MQ=60)
                                          ATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCT                                                     <  SRR4302540.10112097/94‑1 (MQ=60)
                                          ATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCT                                                     >  SRR4302540.6412221/1‑94 (MQ=60)
                                          ATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCT                                                     >  SRR4302540.6412220/1‑94 (MQ=60)
                                            TGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTAC                                                   <  SRR4302540.9896666/94‑1 (MQ=60)
                                             GGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTCCA                                                  >  SRR4302540.2129331/1‑94 (MQ=60)
                                             GGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACA                                                  <  SRR4302540.5149766/94‑1 (MQ=60)
                                             GGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACA                                                  <  SRR4302540.1114452/94‑1 (MQ=60)
                                             GGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACA                                                  >  SRR4302540.2129330/1‑94 (MQ=60)
                                              GCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACAC                                                 <  SRR4302540.4841324/94‑1 (MQ=60)
                                               ggtggATGAAGATAACTGGCAGGCAACGGTTGGCCTGGTTACCGGTTCCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACC                                                <  SRR4302540.9697469/89‑1 (MQ=60)
                                               CGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACC                                                <  SRR4302540.6429213/94‑1 (MQ=60)
                                               CGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACC                                                >  SRR4302540.5082512/1‑94 (MQ=60)
                                               CGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACC                                                <  SRR4302540.6429212/94‑1 (MQ=60)
                                                GTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCG                                               >  SRR4302540.6066350/1‑94 (MQ=60)
                                                   CATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAG                                            <  SRR4302540.1782491/94‑1 (MQ=60)
                                                   CATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAG                                            <  SRR4302540.1782492/94‑1 (MQ=60)
                                                    ATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGA                                           >  SRR4302540.3047551/1‑94 (MQ=60)
                                                    ATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGA                                           >  SRR4302540.2947314/1‑94 (MQ=60)
                                                    ATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGA                                           >  SRR4302540.711586/1‑94 (MQ=60)
                                                    ATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGA                                           >  SRR4302540.711587/1‑94 (MQ=60)
                                                     TGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACTCTCTACACCGCAGAA                                          >  SRR4302540.5542574/1‑94 (MQ=60)
                                                     TGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGAACGCTCAACACCCTCTACACCGCAGAA                                          >  SRR4302540.5542573/1‑94 (MQ=60)
                                                      GAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAA                                         >  SRR4302540.2014341/1‑94 (MQ=60)
                                                       AAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAA                                        >  SRR4302540.1499236/1‑94 (MQ=60)
                                                       AAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAA                                        <  SRR4302540.8928239/94‑1 (MQ=60)
                                                        AGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAAT                                       >  SRR4302540.5673446/1‑94 (MQ=60)
                                                        AGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAAT                                       <  SRR4302540.3787830/94‑1 (MQ=60)
                                                         GATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATA                                      <  SRR4302540.9221581/94‑1 (MQ=60)
                                                          ATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGACAATAT                                     >  SRR4302540.4045777/1‑94 (MQ=60)
                                                          ATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATAT                                     <  SRR4302540.6415891/94‑1 (MQ=60)
                                                          ATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATAT                                     <  SRR4302540.701481/94‑1 (MQ=60)
                                                          ATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATAT                                     >  SRR4302540.4045778/1‑94 (MQ=60)
                                                           TAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATT                                    <  SRR4302540.4139202/94‑1 (MQ=60)
                                                            AACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTC                                   >  SRR4302540.7702254/1‑94 (MQ=60)
                                                            AACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTC                                   >  SRR4302540.4178332/1‑94 (MQ=60)
                                                            AACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTC                                   <  SRR4302540.9270283/94‑1 (MQ=60)
                                                             ACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGTTACGCTCAACACCCTCTACACCGCAGAAAATATTCA                                  <  SRR4302540.6958164/94‑1 (MQ=60)
                                                             ACTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCA                                  >  SRR4302540.2950712/1‑94 (MQ=60)
                                                              CTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAG                                 >  SRR4302540.4090299/1‑94 (MQ=60)
                                                              CTGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAG                                 <  SRR4302540.4738918/94‑1 (MQ=60)
                                                               TGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGG                                <  SRR4302540.9401532/94‑1 (MQ=60)
                                                               TGGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGG                                <  SRR4302540.7826289/94‑1 (MQ=60)
                                                               TCGCAGGCAACGGTTGGCCTGTGTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGG                                <  SRR4302540.7826290/94‑1 (MQ=60)
                                                               CGGCAGGCAACGGTTGGCCTGTTTAAAGGGACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGG                                <  SRR4302540.7962361/94‑1 (MQ=60)
                                                                GGCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGAAGAAAATATTCAGGA                               >  SRR4302540.8178085/1‑94 (MQ=60)
                                                                GGCAGGCAACGGTTGGCCGGTGTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACCCCCTCTACACCGCAGAAAATATTCAGGA                               <  SRR4302540.2984537/94‑1 (MQ=60)
                                                                 GCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGAC                              <  SRR4302540.10133467/94‑1 (MQ=60)
                                                                 GCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGAC                              <  SRR4302540.6436785/94‑1 (MQ=60)
                                                                 GCAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGAC                              <  SRR4302540.3203937/94‑1 (MQ=60)
                                                                  CAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACG                             <  SRR4302540.5808347/94‑1 (MQ=60)
                                                                  CAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACG                             >  SRR4302540.5269226/1‑94 (MQ=60)
                                                                  CAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACG                             >  SRR4302540.8526184/1‑94 (MQ=60)
                                                                  CAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACG                             >  SRR4302540.7872620/1‑94 (MQ=60)
                                                                  CAGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACG                             >  SRR4302540.7872621/1‑94 (MQ=60)
                                                                   AGGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACAA                            >  SRR4302540.10065676/1‑94 (MQ=60)
                                                                    GGCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAA                           >  SRR4302540.1917129/1‑94 (MQ=60)
                                                                     GTAACGGTTGGGCTGCTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACAGCAGAAAATATTCAGGACGAAG                          <  SRR4302540.6488189/94‑1 (MQ=60)
                                                                     GCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAG                          >  SRR4302540.1653509/1‑94 (MQ=60)
                                                                     GCAACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAG                          <  SRR4302540.1527954/94‑1 (MQ=60)
                                                                      CAACGTTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGA                         <  SRR4302540.6496796/94‑1 (MQ=60)
                                                                       AACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAG                        <  SRR4302540.6514809/94‑1 (MQ=60)
                                                                       AACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAG                        <  SRR4302540.6352697/94‑1 (MQ=60)
                                                                       AACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAG                        <  SRR4302540.10119182/94‑1 (MQ=60)
                                                                       AACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAG                        >  SRR4302540.8192507/1‑94 (MQ=60)
                                                                       AACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAG                        <  SRR4302540.6515448/94‑1 (MQ=60)
                                                                        ACGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGT                       >  SRR4302540.141780/1‑94 (MQ=60)
                                                                         CGGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTT                      <  SRR4302540.669344/94‑1 (MQ=60)
                                                                          GGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTC                     >  SRR4302540.9219947/1‑94 (MQ=60)
                                                                          GGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTC                     >  SRR4302540.5015964/1‑94 (MQ=60)
                                                                          GGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTC                     >  SRR4302540.7489/1‑94 (MQ=60)
                                                                          GGTTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTC                     >  SRR4302540.5613138/1‑94 (MQ=60)
                                                                            TTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAA                   <  SRR4302540.2570800/94‑1 (MQ=60)
                                                                            TTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAA                   <  SRR4302540.4021494/94‑1 (MQ=60)
                                                                            TTGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAA                   <  SRR4302540.1211/94‑1 (MQ=60)
                                                                             TGGCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAAT                  <  SRR4302540.8437127/94‑1 (MQ=60)
                                                                               GCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACTCCGCAGAAAATATTCAGGACGAAGAGTTCAATCC                <  SRR4302540.7895560/94‑1 (MQ=60)
                                                                               GCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCC                <  SRR4302540.4460974/94‑1 (MQ=60)
                                                                               GCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCC                >  SRR4302540.2943297/1‑94 (MQ=60)
                                                                               GCCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCC                <  SRR4302540.9426936/94‑1 (MQ=60)
                                                                                CCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCG               <  SRR4302540.2631600/94‑1 (MQ=60)
                                                                                CCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCG               >  SRR4302540.1239146/1‑94 (MQ=60)
                                                                                CCTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCG               <  SRR4302540.5191589/94‑1 (MQ=60)
                                                                                 CTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGG              >  SRR4302540.896331/1‑94 (MQ=60)
                                                                                 CTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGG              >  SRR4302540.6726982/1‑94 (MQ=60)
                                                                                 CTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGG              <  SRR4302540.409075/94‑1 (MQ=60)
                                                                                 CTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGG              >  SRR4302540.5342018/1‑94 (MQ=60)
                                                                                 CTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGG              >  SRR4302540.7602516/1‑94 (MQ=60)
                                                                                 CTGTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGG              <  SRR4302540.9447132/94‑1 (MQ=60)
                                                                                   GTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCTGCA            >  SRR4302540.4542605/1‑94 (MQ=60)
                                                                                   GTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCA            >  SRR4302540.6140055/1‑94 (MQ=60)
                                                                                   GTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCA            >  SRR4302540.9508976/1‑94 (MQ=60)
                                                                                   GTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCA            >  SRR4302540.4542604/1‑94 (MQ=60)
                                                                                   GTTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCA            >  SRR4302540.6430892/1‑94 (MQ=60)
                                                                                    TTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAG           <  SRR4302540.9737291/94‑1 (MQ=60)
                                                                                    TTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACA‑CCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGA          >  SRR4302540.5564991/1‑94 (MQ=60)
                                                                                    GTTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAG           <  SRR4302540.9737289/94‑1 (MQ=60)
                                                                                     TTACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGA          >  SRR4302540.9565280/1‑94 (MQ=60)
                                                                                       ACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAAT        <  SRR4302540.390639/94‑1 (MQ=60)
                                                                                       ACAGGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAAT        >  SRR4302540.8021102/1‑94 (MQ=60)
                                                                                          GGTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTTA     >  SRR4302540.5271064/1‑94 (MQ=60)
                                                                                           GTACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTTAA    <  SRR4302540.2252127/94‑1 (MQ=60)
                                                                                            TACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTTAAC   >  SRR4302540.68910/1‑94 (MQ=60)
                                                                                            TACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTTAAC   >  SRR4302540.8840930/1‑94 (MQ=60)
                                                                                            TACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTTAAC   <  SRR4302540.9154866/94‑1 (MQ=60)
                                                                                            TACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTTAAC   <  SRR4302540.7837178/94‑1 (MQ=60)
                                                                                             ACCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTTAACC  <  SRR4302540.4411563/94‑1 (MQ=60)
                                                                                             |                                                                                             
CTGGCGTCCGTCAGCCGGGTGATCACCCCGGTCTTCAAGCCAATTGGCGTGCATGAAGATAACTGGCAGGCAACGGTTGGCCTGTTTACAGGTGCCATGGCGAAAGAAGTGGTAGTGGGTACGCTCAACACCCTCTACACCGCAGAAAATATTCAGGACGAAGAGTTCAATCCGGCAGAATTTAACC  >  NC_000913/3539681‑3539867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑