Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,847,491 T→C L91L (TTA→TTG)  b3668 ← sensor histidine protein kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,847,4910TC99.8% 1376.3 / ‑5.2 417L91L (TTA→TTG) b3668sensor histidine protein kinase
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (206/210);  total (206/211)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.69e-01

Only 100 of 430 total aligned reads displayed.

CGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACG  >  NC_000913/3847401‑3847581
                                                                                          |                                                                                          
 gccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCaaa                                                                                         >  2:5841306/1‑93 (MQ=255)
 gccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCaaa                                                                                         <  1:2155883/93‑1 (MQ=255)
  ccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAAc                                                                                        <  1:7562224/93‑1 (MQ=255)
  ccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAAc                                                                                        <  1:1729085/93‑1 (MQ=255)
  ccgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAAc                                                                                        >  2:8318343/1‑93 (MQ=255)
   cgTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACt                                                                                       <  1:8340417/93‑1 (MQ=255)
    gTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTa                                                                                      <  2:7445066/93‑1 (MQ=255)
     ttAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAc                                                                                     >  2:9817289/1‑93 (MQ=255)
     ttAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAc                                                                                     <  2:10090/93‑1 (MQ=255)
     ttAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAc                                                                                     >  2:6896072/1‑93 (MQ=255)
     ttAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAc                                                                                     >  1:4911698/1‑93 (MQ=255)
     ttAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAc                                                                                     >  1:3903055/1‑93 (MQ=255)
     ttAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAc                                                                                     >  1:3770591/1‑93 (MQ=255)
           ccgccCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGatca                                                                               <  2:2097864/93‑1 (MQ=255)
             gccCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGatcatc                                                                             >  2:9402682/1‑93 (MQ=255)
               ccccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCaa                                                                           >  2:2996504/1‑93 (MQ=255)
                cccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAt                                                                          >  2:471349/1‑93 (MQ=255)
                cccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAt                                                                          >  1:7740162/1‑93 (MQ=255)
                cccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAt                                                                          >  1:588914/1‑93 (MQ=255)
                cccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAt                                                                          >  1:4336865/1‑93 (MQ=255)
                 ccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATa                                                                         <  1:1386635/93‑1 (MQ=255)
                 ccTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATa                                                                         >  2:2472777/1‑93 (MQ=255)
                 catGTAACAGCAAGGGGCGCCAGTCACGCTGATGGCGATAGCCCGAGACCAGCGTTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATa                                                                         <  2:7688878/91‑1 (MQ=255)
                  cTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCCGTAACGTCAGAAAACTACCGATCATCAATac                                                                        >  1:2753313/1‑92 (MQ=255)
                  cTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATaa                                                                        >  1:194045/1‑93 (MQ=255)
                  cTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCAATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATaa                                                                        <  2:4177590/93‑1 (MQ=255)
                   tGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAc                                                                       >  1:1607451/1‑93 (MQ=255)
                   tGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAc                                                                       <  1:1115016/93‑1 (MQ=255)
                    gTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACg                                                                      <  1:2356670/93‑1 (MQ=255)
                    gTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACg                                                                      >  2:6761898/1‑93 (MQ=255)
                      aaCAGCAAGGTGCGCCAGTCACGCTGAGGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGa                                                                    <  2:1873681/93‑1 (MQ=255)
                       aCAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGaa                                                                   <  2:2332444/93‑1 (MQ=255)
                       aCAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGaa                                                                   >  2:1500720/1‑93 (MQ=255)
                       aCAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGaa                                                                   >  1:3678314/1‑93 (MQ=255)
                        cAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGaaa                                                                  <  2:6544024/93‑1 (MQ=255)
                        cAGCAAGGTGCGCCAGACACGCTGATGGCGATAGCGCGAGAGCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGaaa                                                                  <  2:4431620/93‑1 (MQ=255)
                         aGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGaaaa                                                                 >  2:3728001/1‑93 (MQ=255)
                          gCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAt                                                                <  2:779766/93‑1 (MQ=255)
                          gCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAt                                                                <  2:4895517/93‑1 (MQ=255)
                           cAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATg                                                               <  1:308988/93‑1 (MQ=255)
                            aaGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATgg                                                              <  1:8188851/93‑1 (MQ=255)
                             aGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATggg                                                             >  1:9956396/1‑93 (MQ=255)
                              ggTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGt                                                            >  1:2559675/1‑93 (MQ=255)
                              ggTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGt                                                            <  1:8988393/93‑1 (MQ=255)
                               gTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGtt                                                           >  2:3551351/1‑93 (MQ=255)
                               gTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGta                                                           >  1:1842670/1‑92 (MQ=255)
                                tGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGGTa                                                          >  1:6245149/1‑93 (MQ=255)
                                 tctccAGGCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTaa                                                         <  2:2510442/90‑1 (MQ=255)
                                  cgcCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTaaa                                                        <  1:8640219/93‑1 (MQ=255)
                                  cgcCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTaaa                                                        <  2:7293739/93‑1 (MQ=255)
                                   gcCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAac                                                       <  1:4760877/93‑1 (MQ=255)
                                    ccAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAacg                                                      >  1:6662289/1‑92 (MQ=255)
                                    ccAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAacc                                                      >  1:5515466/1‑93 (MQ=255)
                                     cAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccg                                                     >  2:3439407/1‑93 (MQ=255)
                                      aGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccga                                                    <  2:612394/93‑1 (MQ=255)
                                      aGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccga                                                    <  2:9117023/93‑1 (MQ=255)
                                      aGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccga                                                    <  2:8219240/93‑1 (MQ=255)
                                       gTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccgac                                                   <  2:8466947/93‑1 (MQ=255)
                                        tCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccgacc                                                  >  1:9605428/1‑93 (MQ=255)
                                        tCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccgacc                                                  <  2:5596120/93‑1 (MQ=255)
                                        tCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccgacc                                                  <  1:9684115/93‑1 (MQ=255)
                                        tCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccgacc                                                  <  1:6376068/93‑1 (MQ=255)
                                        tCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAaccgacc                                                  >  1:339124/1‑93 (MQ=255)
                                          aCGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGc                                                >  1:532339/1‑93 (MQ=255)
                                           cGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGcc                                               <  2:3877919/93‑1 (MQ=255)
                                             cTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTg                                             >  2:1354936/1‑93 (MQ=255)
                                              tGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGc                                            >  1:8039732/1‑93 (MQ=255)
                                                aTGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGt                                          <  2:5977617/93‑1 (MQ=255)
                                                aTGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGt                                          >  1:8792959/1‑93 (MQ=255)
                                                 tGGCGATAGCGCGTGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGtt                                         <  1:9350240/93‑1 (MQ=255)
                                                 tGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGtt                                         >  2:1683427/1‑93 (MQ=255)
                                                      aTAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCa                                    >  2:5222880/1‑93 (MQ=255)
                                                      aTAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCa                                    >  1:3250455/1‑93 (MQ=255)
                                                         gcgcGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTa                                 >  1:4431965/1‑93 (MQ=255)
                                                           gcgAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTaaa                               >  2:2001055/1‑93 (MQ=255)
                                                            cgAGATCAGGGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAAt                              <  2:6496919/93‑1 (MQ=255)
                                                             gagaTCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATc                             <  1:9288451/93‑1 (MQ=255)
                                                             gagaTCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATc                             <  2:8057924/93‑1 (MQ=255)
                                                               gaTCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATcag                           >  1:1276245/1‑93 (MQ=255)
                                                                   aGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCagcagc                       >  1:2848928/1‑93 (MQ=255)
                                                                    gcgcTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGcc                      <  2:5791695/93‑1 (MQ=255)
                                                                     cgcTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCa                     <  1:7900982/93‑1 (MQ=255)
                                                                     cgcTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCa                     <  1:7399278/93‑1 (MQ=255)
                                                                      gcTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCAc                    <  1:10032087/93‑1 (MQ=255)
                                                                        tACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTc                  <  1:8216904/93‑1 (MQ=255)
                                                                        tACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTc                  <  2:8724599/93‑1 (MQ=255)
                                                                         aCGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTcc                 >  1:1031139/1‑93 (MQ=255)
                                                                         aCGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTcc                 <  2:3173341/93‑1 (MQ=255)
                                                                           gggCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcgc               <  1:9455322/93‑1 (MQ=255)
                                                                            ggCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcgcg              >  2:8971389/1‑93 (MQ=255)
                                                                            ggCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcgcg              <  2:2746464/93‑1 (MQ=255)
                                                                            ggCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCcgcg              >  2:1799035/1‑93 (MQ=255)
                                                                               aGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCcccc           >  1:3589042/1‑93 (MQ=255)
                                                                               aGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGATAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGccc           >  1:7238468/1‑93 (MQ=255)
                                                                                gTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCa          <  1:6134522/93‑1 (MQ=255)
                                                                                 tAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAg         >  1:692795/1‑93 (MQ=255)
                                                                                   aCGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCa       >  1:4053187/1‑93 (MQ=255)
                                                                                    cGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCaa      >  1:4528641/1‑93 (MQ=255)
                                                                                     gTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAAt     <  2:5009982/93‑1 (MQ=255)
                                                                                      tCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATa    >  2:9679175/1‑93 (MQ=255)
                                                                                          |                                                                                          
CGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACG  >  NC_000913/3847401‑3847581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 239 total aligned reads displayed.
CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGGC  >  NC_000913/3847398‑3847584
                                                                                             |                                                                                             
CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGC                                                                                               >  SRR4302540.8570820/1‑94 (MQ=60)
 GCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCA                                                                                              >  SRR4302540.9108488/1‑94 (MQ=60)
  CCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAA                                                                                             >  SRR4302540.1806019/1‑94 (MQ=60)
  CCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAA                                                                                             >  SRR4302540.3669747/1‑94 (MQ=60)
  CCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAA                                                                                             >  SRR4302540.1806303/1‑94 (MQ=60)
    GCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAAC                                                                                           <  SRR4302540.6356118/94‑1 (MQ=60)
    GCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAAC                                                                                           <  SRR4302540.8018395/94‑1 (MQ=60)
     CCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACT                                                                                          <  SRR4302540.2806563/94‑1 (MQ=60)
     CCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACT                                                                                          <  SRR4302540.1747747/94‑1 (MQ=60)
     CCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGAAAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACT                                                                                          <  SRR4302540.2352205/94‑1 (MQ=60)
      CGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTA                                                                                         >  SRR4302540.8212770/1‑94 (MQ=60)
      CGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTA                                                                                         >  SRR4302540.1335514/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302540.9333850/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302540.3811724/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302540.3945390/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302540.3945391/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        <  SRR4302540.7631993/94‑1 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        <  SRR4302540.7631991/94‑1 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302540.8724987/1‑94 (MQ=60)
       GTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTAC                                                                                        >  SRR4302540.4964588/1‑94 (MQ=60)
        TTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACC                                                                                       <  SRR4302540.2710617/94‑1 (MQ=60)
        TTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACC                                                                                       <  SRR4302540.9389931/94‑1 (MQ=60)
        GTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACC                                                                                       <  SRR4302540.4827484/94‑1 (MQ=60)
         TAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCG                                                                                      <  SRR4302540.8521171/94‑1 (MQ=60)
           ACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGAT                                                                                    <  SRR4302540.974968/94‑1 (MQ=60)
           ACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGAT                                                                                    <  SRR4302540.8945446/94‑1 (MQ=60)
            CGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATC                                                                                   <  SRR4302540.7246347/94‑1 (MQ=60)
             GCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCA                                                                                  <  SRR4302540.4629532/94‑1 (MQ=60)
             GCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCA                                                                                  <  SRR4302540.6803230/94‑1 (MQ=60)
               CGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATC                                                                                <  SRR4302540.2421541/94‑1 (MQ=60)
               CGCCCCCTGTAACAGCAAGGGGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATC                                                                                >  SRR4302540.6194726/1‑94 (MQ=60)
                GCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCA                                                                               <  SRR4302540.3724058/94‑1 (MQ=60)
                GCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCA                                                                               <  SRR4302540.3664385/94‑1 (MQ=60)
                 CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAA                                                                              >  SRR4302540.8006346/1‑94 (MQ=60)
                 CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAA                                                                              >  SRR4302540.8915048/1‑94 (MQ=60)
                  CCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAT                                                                             <  SRR4302540.3670603/94‑1 (MQ=60)
                  CCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAT                                                                             >  SRR4302540.4384078/1‑94 (MQ=60)
                  CCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAT                                                                             >  SRR4302540.7830527/1‑94 (MQ=60)
                  CCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAT                                                                             >  SRR4302540.6284440/1‑94 (MQ=60)
                  CCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGAGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAT                                                                             <  SRR4302540.1279102/94‑1 (MQ=60)
                  CCCATGTAACAGCAAGGTGCCCCAGTCAGTCTGATGGAGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAT                                                                             <  SRR4302540.1279101/94‑1 (MQ=60)
                   CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATA                                                                            >  SRR4302540.4409521/1‑94 (MQ=60)
                    CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAA                                                                           >  SRR4302540.195974/1‑94 (MQ=60)
                    CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAA                                                                           <  SRR4302540.9647692/94‑1 (MQ=60)
                    CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAA                                                                           >  SRR4302540.195973/1‑94 (MQ=60)
                    CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAA                                                                           <  SRR4302540.4313227/94‑1 (MQ=60)
                    CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAA                                                                           <  SRR4302540.1401465/94‑1 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          >  SRR4302540.8217760/1‑94 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          <  SRR4302540.6240330/94‑1 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          >  SRR4302540.9500697/1‑94 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          >  SRR4302540.1625045/1‑94 (MQ=60)
                     CTGTAACAGCAAGGTGCGCCAGTCACACTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAAC                                                                          <  SRR4302540.4087697/94‑1 (MQ=60)
                      TGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACG                                                                         >  SRR4302540.1518271/1‑94 (MQ=60)
                       GTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGG                                                                        <  SRR4302540.2382054/94‑1 (MQ=60)
                        TAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGA                                                                       <  SRR4302540.9360942/94‑1 (MQ=60)
                        TAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGA                                                                       <  SRR4302540.7616014/94‑1 (MQ=60)
                         AACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAA                                                                      >  SRR4302540.3718523/1‑94 (MQ=60)
                         AACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAA                                                                      <  SRR4302540.7778959/94‑1 (MQ=60)
                         AACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAA                                                                      <  SRR4302540.2326419/94‑1 (MQ=60)
                          ACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAA                                                                     <  SRR4302540.4792273/94‑1 (MQ=60)
                           CAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAA                                                                    <  SRR4302540.4641731/94‑1 (MQ=60)
                           CAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAA                                                                    <  SRR4302540.4309998/94‑1 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTTATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   >  SRR4302540.1866427/1‑94 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   <  SRR4302540.9474949/94‑1 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   <  SRR4302540.10150526/94‑1 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   <  SRR4302540.3335415/94‑1 (MQ=60)
                            AGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAAT                                                                   <  SRR4302540.2007336/94‑1 (MQ=60)
                              CAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGG                                                                 >  SRR4302540.3625805/1‑94 (MQ=60)
                              CAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGG                                                                 <  SRR4302540.312051/94‑1 (MQ=60)
                              CAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGG                                                                 >  SRR4302540.5459107/1‑94 (MQ=60)
                              CAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGG                                                                 <  SRR4302540.5751350/94‑1 (MQ=60)
                               AAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGG                                                                <  SRR4302540.8283990/94‑1 (MQ=60)
                               AAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGG                                                                <  SRR4302540.5032941/94‑1 (MQ=60)
                               AAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGG                                                                >  SRR4302540.10072605/1‑94 (MQ=60)
                                AGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGT                                                               <  SRR4302540.4532393/94‑1 (MQ=60)
                                AGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGT                                                               <  SRR4302540.4532386/94‑1 (MQ=60)
                                AGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGT                                                               >  SRR4302540.2587268/1‑94 (MQ=60)
                                 GGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTT                                                              <  SRR4302540.7816478/94‑1 (MQ=60)
                                 GGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTT                                                              <  SRR4302540.5726649/94‑1 (MQ=60)
                                 GGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTT                                                              <  SRR4302540.9095883/94‑1 (MQ=60)
                                 GGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTA                                                              >  SRR4302540.1862853/1‑94 (MQ=60)
                                  GTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTA                                                             >  SRR4302540.4544170/1‑94 (MQ=60)
                                  GTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTA                                                             <  SRR4302540.3875542/94‑1 (MQ=60)
                                  GTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGGTA                                                             >  SRR4302540.6314650/1‑94 (MQ=60)
                                    gagccaggcgCGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAA                                                           <  SRR4302540.8305667/84‑1 (MQ=60)
                                    GCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAA                                                           >  SRR4302540.8388975/1‑94 (MQ=60)
                                    GCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAA                                                           <  SRR4302540.3263681/94‑1 (MQ=60)
                                    GCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAA                                                           <  SRR4302540.3778225/94‑1 (MQ=60)
                                    GCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAA                                                           <  SRR4302540.1412633/94‑1 (MQ=60)
                                    GCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACAACCGATCATCAATAACGGAAAATGGGTTAAA                                                           <  SRR4302540.8305666/94‑1 (MQ=60)
                                     CGCCAGTCACGCTGATGGCGATAGCGCTAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAAC                                                          <  SRR4302540.3818308/94‑1 (MQ=60)
                                     CGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAAC                                                          >  SRR4302540.5363479/1‑94 (MQ=60)
                                      GCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACC                                                         >  SRR4302540.5576215/1‑94 (MQ=60)
                                      GCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACC                                                         <  SRR4302540.8581196/94‑1 (MQ=60)
                                      GCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACC                                                         <  SRR4302540.85552/94‑1 (MQ=60)
                                      GCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACC                                                         <  SRR4302540.5975482/94‑1 (MQ=60)
                                      GCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACC                                                         <  SRR4302540.4811683/94‑1 (MQ=60)
                                       CCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCG                                                        <  SRR4302540.122754/94‑1 (MQ=60)
                                        CAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGA                                                       >  SRR4302540.4930786/1‑94 (MQ=60)
                                         AGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGAC                                                      >  SRR4302540.9596342/1‑94 (MQ=60)
                                         AGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGAC                                                      >  SRR4302540.9762561/1‑94 (MQ=60)
                                         AGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGAC                                                      >  SRR4302540.4022655/1‑94 (MQ=60)
                                         AGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGAC                                                      >  SRR4302540.8823051/1‑94 (MQ=60)
                                          GTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACC                                                     >  SRR4302540.10082423/1‑94 (MQ=60)
                                          GTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACC                                                     >  SRR4302540.342547/1‑94 (MQ=60)
                                          GTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACC                                                     >  SRR4302540.2596440/1‑94 (MQ=60)
                                           TCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCG                                                    <  SRR4302540.9798050/94‑1 (MQ=60)
                                           TCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCG                                                    <  SRR4302540.6447060/94‑1 (MQ=60)
                                            CACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGC                                                   >  SRR4302540.9641646/1‑94 (MQ=60)
                                            CACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGC                                                   >  SRR4302540.8335195/1‑94 (MQ=60)
                                            CACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGC                                                   >  SRR4302540.9641647/1‑94 (MQ=60)
                                            CACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGC                                                   >  SRR4302540.538092/1‑94 (MQ=60)
                                              CGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCT                                                 <  SRR4302540.3489263/94‑1 (MQ=60)
                                              CGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCT                                                 <  SRR4302540.1388044/94‑1 (MQ=60)
                                              CGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCT                                                 >  SRR4302540.1105495/1‑94 (MQ=60)
                                              CGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCT                                                 <  SRR4302540.1362777/94‑1 (MQ=60)
                                               GCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTG                                                >  SRR4302540.1802215/1‑94 (MQ=60)
                                               GCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTG                                                >  SRR4302540.5840930/1‑94 (MQ=60)
                                                CTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGC                                               >  SRR4302540.8133159/1‑94 (MQ=60)
                                                CTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGC                                               <  SRR4302540.1651284/94‑1 (MQ=60)
                                                CTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGC                                               >  SRR4302540.6267673/1‑94 (MQ=60)
                                                CTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACGACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGC                                               <  SRR4302540.1651283/94‑1 (MQ=60)
                                                  GATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGT                                             >  SRR4302540.2956486/1‑94 (MQ=60)
                                                  GATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGT                                             >  SRR4302540.8894666/1‑94 (MQ=60)
                                                    TGGCGATAGCGCGTGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTA                                           <  SRR4302540.9461607/94‑1 (MQ=60)
                                                     GGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAG                                          <  SRR4302540.4429077/94‑1 (MQ=60)
                                                     GGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAG                                          <  SRR4302540.839588/94‑1 (MQ=60)
                                                     GGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAG                                          <  SRR4302540.6741538/94‑1 (MQ=60)
                                                       CGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCC                                        >  SRR4302540.8114510/1‑94 (MQ=60)
                                                       CGATAGCGCGAGATCAGCGCTACGCGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCC                                        <  SRR4302540.6057345/94‑1 (MQ=60)
                                                        GATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCA                                       >  SRR4302540.1721505/1‑94 (MQ=60)
                                                        GATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCA                                       >  SRR4302540.3285866/1‑94 (MQ=60)
                                                        GATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCA                                       >  SRR4302540.3285865/1‑94 (MQ=60)
                                                        GATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCA                                       >  SRR4302540.745318/1‑94 (MQ=60)
                                                         ATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAG                                      <  SRR4302540.7244720/94‑1 (MQ=60)
                                                         ATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAG                                      >  SRR4302540.2298591/1‑94 (MQ=60)
                                                         ATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAG                                      >  SRR4302540.8842074/1‑94 (MQ=60)
                                                          TAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGT                                     <  SRR4302540.6654912/94‑1 (MQ=60)
                                                           AGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTA                                    >  SRR4302540.4479976/1‑94 (MQ=60)
                                                            GCGCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAA                                   >  SRR4302540.4559803/1‑94 (MQ=60)
                                                              GCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAAT                                 >  SRR4302540.3108805/1‑94 (MQ=60)
                                                              GCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAAT                                 >  SRR4302540.5520415/1‑94 (MQ=60)
                                                              GCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAAT                                 >  SRR4302540.7896998/1‑94 (MQ=60)
                                                              GCGAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAAT                                 <  SRR4302540.6151720/94‑1 (MQ=60)
                                                                GAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCA                               <  SRR4302540.9399453/94‑1 (MQ=60)
                                                                GAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCA                               <  SRR4302540.5253599/94‑1 (MQ=60)
                                                                GAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCA                               <  SRR4302540.6906873/94‑1 (MQ=60)
                                                                GAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCA                               <  SRR4302540.7685696/94‑1 (MQ=60)
                                                                GAGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCA                               >  SRR4302540.3819460/1‑94 (MQ=60)
                                                                 AGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAG                              <  SRR4302540.7333918/94‑1 (MQ=60)
                                                                 AGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAG                              <  SRR4302540.8138367/94‑1 (MQ=60)
                                                                 AGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAG                              >  SRR4302540.1289400/1‑94 (MQ=60)
                                                                 AGATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAG                              <  SRR4302540.308126/94‑1 (MQ=60)
                                                                   ATCAGCGCTCCGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAACCCGACCGCCTGCGTTAGCCAGTAAATCAGCA                            <  SRR4302540.231571/94‑1 (MQ=60)
                                                                   ATCAGCGCTACGGGCAGTATCGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCA                            <  SRR4302540.104902/94‑1 (MQ=60)
                                                                   ATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCA                            >  SRR4302540.1101078/1‑94 (MQ=60)
                                                                   ATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCA                            <  SRR4302540.2143361/94‑1 (MQ=60)
                                                                   ATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCA                            <  SRR4302540.2539937/94‑1 (MQ=60)
                                                                   ATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCA                            >  SRR4302540.2692467/1‑94 (MQ=60)
                                                                   ATCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCA                            <  SRR4302540.9454381/94‑1 (MQ=60)
                                                                    TCAGCGCTACGGGCAGTAACGTCAGCAANCNACCGANCATCAATAACGNAAAATGGGTTAAACCGACNNCNNNCGTNAGCCAGTNANTCANCAG                           >  SRR4302540.5301795/1‑94 (MQ=60)
                                                                    TCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAG                           >  SRR4302540.9454334/1‑94 (MQ=60)
                                                                    TCAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAG                           >  SRR4302540.3476816/1‑94 (MQ=60)
                                                                     CAGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAAGACCGGCAAATGGGTTAAACCaccaacccgcgtagaccagtaaaccagcaac                          >  SRR4302540.2879784/1‑63 (MQ=58)
                                                                      AGCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCC                         >  SRR4302540.5452678/1‑94 (MQ=60)
                                                                       GCGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCC                        >  SRR4302540.3594780/1‑94 (MQ=60)
                                                                        CGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCAC                       <  SRR4302540.6802111/94‑1 (MQ=60)
                                                                        CGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCAC                       <  SRR4302540.7481714/94‑1 (MQ=60)
                                                                        CGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCAC                       <  SRR4302540.8857668/94‑1 (MQ=60)
                                                                        CGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCAC                       <  SRR4302540.9831680/94‑1 (MQ=60)
                                                                        CGCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCAC                       <  SRR4302540.7993133/94‑1 (MQ=60)
                                                                         GCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACT                      <  SRR4302540.10148782/94‑1 (MQ=60)
                                                                         GCTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACT                      <  SRR4302540.2075786/94‑1 (MQ=60)
                                                                          CTACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTC                     >  SRR4302540.9753252/1‑94 (MQ=60)
                                                                           TACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCC                    <  SRR4302540.8312408/94‑1 (MQ=60)
                                                                           TACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCC                    >  SRR4302540.1041617/1‑94 (MQ=60)
                                                                            ACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCG                   <  SRR4302540.7842013/94‑1 (MQ=60)
                                                                            ACGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCG                   >  SRR4302540.6028219/1‑94 (MQ=60)
                                                                             CGGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGC                  <  SRR4302540.6592507/94‑1 (MQ=60)
                                                                              GGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCG                 <  SRR4302540.9567535/94‑1 (MQ=60)
                                                                              GGGCAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCG                 >  SRR4302540.10028134/1‑94 (MQ=60)
                                                                                 CAGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGATAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCC              >  SRR4302540.7319201/1‑94 (MQ=60)
                                                                                  AGTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCA             <  SRR4302540.10100196/94‑1 (MQ=60)
                                                                                   GTAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAG            >  SRR4302540.700222/1‑94 (MQ=60)
                                                                                    TAACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGC           <  SRR4302540.6707767/94‑1 (MQ=60)
                                                                                     AACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCA          >  SRR4302540.4096887/1‑94 (MQ=60)
                                                                                     AACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCA          >  SRR4302540.332972/1‑94 (MQ=60)
                                                                                      ACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAA         >  SRR4302540.2858396/1‑94 (MQ=60)
                                                                                      ACGTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAA         >  SRR4302540.2858395/1‑94 (MQ=60)
                                                                                        GTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATA       <  SRR4302540.102904/94‑1 (MQ=60)
                                                                                        GTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATA       >  SRR4302540.2989393/1‑94 (MQ=60)
                                                                                        GTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATA       <  SRR4302540.9117959/94‑1 (MQ=60)
                                                                                        GTCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGACCAGCAATA       >  SRR4302540.6385315/1‑94 (MQ=60)
                                                                                         TCAGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATAC      <  SRR4302540.7485588/94‑1 (MQ=60)
                                                                                           AGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGG    >  SRR4302540.5653892/1‑94 (MQ=60)
                                                                                           AGCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGACCAGCAATACGG    >  SRR4302540.3684313/1‑94 (MQ=60)
                                                                                            GCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCGGCGCCCAGCAATACGGG   >  SRR4302540.9085267/1‑94 (MQ=60)
                                                                                            GCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGG   <  SRR4302540.2794506/94‑1 (MQ=60)
                                                                                            GCAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGG   <  SRR4302540.9203883/94‑1 (MQ=60)
                                                                                             CAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGGC  >  SRR4302540.6294420/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGCCGCCGTTAACGCCGCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAACGGAAAATGGGTTAAACCGACCGCCTGCGTTAGCCAGTAAATCAGCAGCCACTCCGCGCCCAGCAATACGGGC  >  NC_000913/3847398‑3847584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑