Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,873,493 T→C C124C (TGT→TGC)  yidX → putative replicase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,873,4930TC99.9% 2502.0 / ‑5.7 755C124C (TGT→TGC) yidXputative replicase
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (375/379);  total (376/379)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.57e-01

Only 100 of 768 total aligned reads displayed.

CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT  >  NC_000913/3873403‑3873582
                                                                                          |                                                                                         
cGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCAc                                                                                         >  2:7248707/1‑93 (MQ=255)
cGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCAc                                                                                         >  2:4672201/1‑93 (MQ=255)
  gCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCa                                                                                       <  2:3145978/93‑1 (MQ=255)
   cacaATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAg                                                                                      <  1:690791/93‑1 (MQ=255)
   cacaATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAg                                                                                      <  1:1383946/93‑1 (MQ=255)
   cacaATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAg                                                                                      <  2:8761169/93‑1 (MQ=255)
    acaATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAgg                                                                                     >  2:4082946/1‑93 (MQ=255)
    acaATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAgg                                                                                     >  2:7668286/1‑93 (MQ=255)
         atCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACt                                                                                <  1:9133845/93‑1 (MQ=255)
         atCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACt                                                                                <  1:3710811/93‑1 (MQ=255)
          tCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTg                                                                               <  2:9342976/93‑1 (MQ=255)
            gCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGa                                                                             >  1:3312834/1‑93 (MQ=255)
            gCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGa                                                                             <  2:6758481/93‑1 (MQ=255)
             cTTCACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGaa                                                                            <  2:5435661/93‑1 (MQ=255)
               ttACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGaaaa                                                                          <  1:2728098/93‑1 (MQ=255)
               ttACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGaaaa                                                                          >  1:4045042/1‑93 (MQ=255)
                  ctactactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAAAACTGCACCAGGTCACTGAAAAACCt                                                                       >  2:7910527/1‑93 (MQ=255)
                   taccactGGAATAACGTAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCATGTCACTGGAAAACCTa                                                                      >  2:8920421/1‑93 (MQ=255)
                    actactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaa                                                                     >  2:7002003/1‑93 (MQ=255)
                     ctactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaa                                                                    >  2:10026769/1‑93 (MQ=255)
                     ctactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaa                                                                    <  2:2417122/93‑1 (MQ=255)
                      tactGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTaaaa                                                                   >  1:840978/1‑93 (MQ=255)
                        ctGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAgg                                                                 >  1:6602427/1‑93 (MQ=255)
                         tGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGc                                                                <  1:1506161/93‑1 (MQ=255)
                          ggAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGca                                                               <  2:5922293/93‑1 (MQ=255)
                          ggAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGca                                                               >  1:4885846/1‑93 (MQ=255)
                           gAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGcac                                                              >  2:1720819/1‑93 (MQ=255)
                            aaTAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGcaca                                                             >  1:7657051/1‑93 (MQ=255)
                             aTAACGAAGAAGAAAAGGCACTGGCAACGTATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACaa                                                            <  2:1473076/93‑1 (MQ=255)
                             aTAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACaa                                                            <  2:654572/93‑1 (MQ=255)
                              tAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAt                                                           >  2:9118380/1‑93 (MQ=255)
                              tAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAt                                                           >  2:1324499/1‑93 (MQ=255)
                              tAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAt                                                           <  1:9224415/93‑1 (MQ=255)
                               aaCGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATc                                                          <  1:5503328/93‑1 (MQ=255)
                                aCGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATcc                                                         >  1:8878494/1‑93 (MQ=255)
                                aCGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATcc                                                         <  2:339427/93‑1 (MQ=255)
                                aCGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATcc                                                         <  2:6024382/93‑1 (MQ=255)
                                    agaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATga                                                     >  1:6425778/1‑93 (MQ=255)
                                    agaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATga                                                     <  1:4426791/93‑1 (MQ=255)
                                     gaagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgag                                                    <  1:4579539/93‑1 (MQ=255)
                                      aagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgaga                                                   >  1:7879819/1‑93 (MQ=255)
                                      aagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgaga                                                   <  1:123368/93‑1 (MQ=255)
                                      aagaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATgaga                                                   >  1:7172031/1‑93 (MQ=255)
                                        gaaAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaa                                                 <  1:583815/93‑1 (MQ=255)
                                         aaaaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaaa                                                >  2:3909957/1‑93 (MQ=255)
                                         aaaaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaaa                                                >  1:2519388/1‑93 (MQ=255)
                                         aaaaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGaaaa                                                >  2:8505191/1‑93 (MQ=255)
                                           aaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAAt                                              <  2:55873/93‑1 (MQ=255)
                                           aaGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAAt                                              >  1:6680783/1‑93 (MQ=255)
                                            aGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATa                                             >  2:4842787/1‑93 (MQ=255)
                                              gCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaa                                           <  2:6431060/93‑1 (MQ=255)
                                               cACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaa                                          <  2:8057988/93‑1 (MQ=255)
                                               cACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaa                                          >  2:1061124/1‑93 (MQ=255)
                                               cACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaa                                          <  1:5256227/93‑1 (MQ=255)
                                                aCTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaaa                                         >  1:5032299/1‑93 (MQ=255)
                                                aCTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATaaaaa                                         <  1:2993390/93‑1 (MQ=255)
                                                 cTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAc                                        >  2:4490021/1‑93 (MQ=255)
                                                 cTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAc                                        <  1:5447550/93‑1 (MQ=255)
                                                  tGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACa                                       <  1:4742818/93‑1 (MQ=255)
                                                     cAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATgg                                    <  1:2202309/93‑1 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   >  1:747985/1‑93 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   >  2:6297166/1‑93 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   <  2:290278/93‑1 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   <  1:5920799/93‑1 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   <  1:1982981/93‑1 (MQ=255)
                                                      aaCGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGa                                   <  2:9261195/93‑1 (MQ=255)
                                                        cGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAtt                                 <  2:2078395/93‑1 (MQ=255)
                                                        cGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAtt                                 <  2:9466435/93‑1 (MQ=255)
                                                        cGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAtt                                 <  1:3919950/93‑1 (MQ=255)
                                                         gCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTa                                <  1:8047510/93‑1 (MQ=255)
                                                           aTTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACt                              >  2:4277840/1‑93 (MQ=255)
                                                           aTTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACt                              >  1:9812802/1‑93 (MQ=255)
                                                           aTTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACt                              >  1:2395850/1‑93 (MQ=255)
                                                            ttATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                             >  2:3703299/1‑93 (MQ=255)
                                                            ttATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                             >  1:4326562/1‑93 (MQ=255)
                                                            ttATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTc                             >  1:10011480/1‑93 (MQ=255)
                                                              aTGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCaa                           <  2:8334825/93‑1 (MQ=255)
                                                                ggTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAg                         <  1:9730196/93‑1 (MQ=255)
                                                                  ttttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAggg                       >  1:8277563/1‑92 (MQ=255)
                                                                  ttttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGt                       >  2:5262256/1‑93 (MQ=255)
                                                                  ttttGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGt                       >  1:6123499/1‑93 (MQ=255)
                                                                     tGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGAt                    <  1:1090466/93‑1 (MQ=255)
                                                                     tGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGAt                    <  1:958262/93‑1 (MQ=255)
                                                                       ccTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATgg                  <  2:8145771/93‑1 (MQ=255)
                                                                         tgtgGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCg                >  1:5721878/1‑93 (MQ=255)
                                                                         tgtgGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCg                >  1:7044374/1‑93 (MQ=255)
                                                                         tgtgGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCg                <  1:9345885/93‑1 (MQ=255)
                                                                            ggtgTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTc             >  2:9893855/1‑93 (MQ=255)
                                                                            ggtgTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTc             <  1:1665848/93‑1 (MQ=255)
                                                                            ggtgTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTc             >  1:8692263/1‑93 (MQ=255)
                                                                              tgtTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTa           >  1:9006671/1‑93 (MQ=255)
                                                                                ttCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcc         >  2:2610935/1‑93 (MQ=255)
                                                                                gtCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAcc         <  1:7338772/92‑1 (MQ=255)
                                                                                  cAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccat       <  1:3531163/93‑1 (MQ=255)
                                                                                   aaCACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatc      <  2:1585354/93‑1 (MQ=255)
                                                                                   aaCACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatc      <  2:3507291/93‑1 (MQ=255)
                                                                                      acTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAccatccat   >  2:1832894/1‑93 (MQ=255)
                                                                                       cTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAtt  <  2:568313/93‑1 (MQ=255)
                                                                                       cTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAtt  >  1:2630595/1‑93 (MQ=255)
                                                                                       cTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAtt  >  2:5097201/1‑93 (MQ=255)
                                                                                          |                                                                                         
CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT  >  NC_000913/3873403‑3873582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 421 total aligned reads displayed.
TACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  NC_000913/3873400‑3873586
                                                                                             |                                                                                             
TACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGC                                                                                               <  SRR4302540.2314397/94‑1 (MQ=60)
TACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGC                                                                                               <  SRR4302540.4043291/94‑1 (MQ=60)
TACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGC                                                                                               <  SRR4302540.7353745/94‑1 (MQ=60)
 ACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCA                                                                                              <  SRR4302540.8719260/94‑1 (MQ=60)
  CCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCAC                                                                                             <  SRR4302540.3109162/94‑1 (MQ=60)
   CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            <  SRR4302540.993013/94‑1 (MQ=60)
   CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            >  SRR4302540.2500135/1‑94 (MQ=60)
   CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            >  SRR4302540.5418888/1‑94 (MQ=60)
   CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            <  SRR4302540.6063770/94‑1 (MQ=60)
   CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            >  SRR4302540.7891966/1‑94 (MQ=60)
   CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            <  SRR4302540.9264764/94‑1 (MQ=60)
   CGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACC                                                                                            <  SRR4302540.1216456/94‑1 (MQ=60)
    GGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCA                                                                                           >  SRR4302540.8109247/1‑94 (MQ=60)
    GGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCA                                                                                           <  SRR4302540.4215790/94‑1 (MQ=60)
    GGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCA                                                                                           >  SRR4302540.857194/1‑94 (MQ=60)
     GCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAG                                                                                          <  SRR4302540.2508918/94‑1 (MQ=60)
     GCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAG                                                                                          <  SRR4302540.3546689/94‑1 (MQ=60)
      CACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGG                                                                                         <  SRR4302540.1398728/94‑1 (MQ=60)
      CACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGG                                                                                         <  SRR4302540.8963445/94‑1 (MQ=60)
      CACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGCTTTGCCTGTGGTGTTCAACACTGCACCAGG                                                                                         >  SRR4302540.7177576/1‑94 (MQ=60)
       ACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGT                                                                                        >  SRR4302540.7088483/1‑94 (MQ=60)
       ACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGT                                                                                        >  SRR4302540.1121788/1‑94 (MQ=60)
        CAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTC                                                                                       >  SRR4302540.6668412/1‑94 (MQ=60)
        CAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTC                                                                                       <  SRR4302540.2468964/94‑1 (MQ=60)
        CAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTC                                                                                       >  SRR4302540.82134/1‑94 (MQ=60)
        CAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTC                                                                                       <  SRR4302540.5177641/94‑1 (MQ=60)
         AATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCA                                                                                      >  SRR4302540.6504963/1‑94 (MQ=60)
         AATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCA                                                                                      <  SRR4302540.9764784/94‑1 (MQ=60)
         AATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCA                                                                                      >  SRR4302540.5028631/1‑94 (MQ=60)
          ATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCAC                                                                                     >  SRR4302540.8932852/1‑94 (MQ=60)
          ATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCAC                                                                                     >  SRR4302540.6279780/1‑94 (MQ=60)
           TATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTTTTCAACACTGCACCAGGTCACT                                                                                    <  SRR4302540.5080613/94‑1 (MQ=60)
           TATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACT                                                                                    >  SRR4302540.5551004/1‑94 (MQ=60)
            ATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTG                                                                                   <  SRR4302540.5158718/94‑1 (MQ=60)
            ATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTG                                                                                   >  SRR4302540.5603453/1‑94 (MQ=60)
             TCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGG                                                                                  <  SRR4302540.841311/94‑1 (MQ=60)
              CGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGA                                                                                 >  SRR4302540.3349132/1‑94 (MQ=60)
                 TTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAA                                                                              >  SRR4302540.5023633/1‑94 (MQ=60)
                 TTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAA                                                                              >  SRR4302540.3755753/1‑94 (MQ=60)
                   TACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACAAGGTCACTGGAAAACC                                                                            <  SRR4302540.9047660/94‑1 (MQ=60)
                     CTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTA                                                                          >  SRR4302540.4378985/1‑94 (MQ=60)
                     CTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTA                                                                          >  SRR4302540.5362991/1‑94 (MQ=60)
                     CTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTA                                                                          >  SRR4302540.7185277/1‑94 (MQ=60)
                      TACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAA                                                                         >  SRR4302540.3320859/1‑94 (MQ=60)
                        CTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAA                                                                       <  SRR4302540.4134977/94‑1 (MQ=60)
                        CTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAA                                                                       >  SRR4302540.7261588/1‑94 (MQ=60)
                        CTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAA                                                                       >  SRR4302540.4566260/1‑94 (MQ=60)
                        CTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAA                                                                       <  SRR4302540.17956/94‑1 (MQ=60)
                         TACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAG                                                                      <  SRR4302540.9611073/94‑1 (MQ=60)
                          ACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGG                                                                     <  SRR4302540.8994008/94‑1 (MQ=60)
                           CTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGC                                                                    >  SRR4302540.1348666/1‑94 (MQ=60)
                           CTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGGCACTGGAAAACCTCAAAGGC                                                                    >  SRR4302540.4232505/1‑94 (MQ=60)
                            TGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCGCCAGGTCACTGGAAAACCTAAAAGGCA                                                                   <  SRR4302540.5979509/94‑1 (MQ=60)
                            TGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCA                                                                   >  SRR4302540.4938335/1‑94 (MQ=60)
                            TGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCA                                                                   <  SRR4302540.5826566/94‑1 (MQ=60)
                             GGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCAC                                                                  >  SRR4302540.9454636/1‑94 (MQ=60)
                              GAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACA                                                                 >  SRR4302540.7743264/1‑94 (MQ=60)
                              GAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTGTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACA                                                                 <  SRR4302540.4736581/94‑1 (MQ=60)
                               AATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAA                                                                >  SRR4302540.2777051/1‑94 (MQ=60)
                               AATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGCCACTGGAAAACCTAAAAGGCACAC                                                                >  SRR4302540.1630869/1‑94 (MQ=60)
                                ATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAT                                                               >  SRR4302540.1208768/1‑94 (MQ=60)
                                ATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAT                                                               >  SRR4302540.9847916/1‑94 (MQ=60)
                                ATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAAT                                                               >  SRR4302540.9573702/1‑94 (MQ=60)
                                 TAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATC                                                              >  SRR4302540.9240904/1‑94 (MQ=60)
                                 TAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATC                                                              >  SRR4302540.6992502/1‑94 (MQ=60)
                                 TAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATC                                                              <  SRR4302540.5262356/94‑1 (MQ=60)
                                 TAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATC                                                              <  SRR4302540.9335024/94‑1 (MQ=60)
                                 TAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATC                                                              >  SRR4302540.5384816/1‑94 (MQ=60)
                                  AACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCC                                                             <  SRR4302540.4451696/94‑1 (MQ=60)
                                    CGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCAT                                                           >  SRR4302540.6549780/1‑94 (MQ=60)
                                      AAGAAGAAAAGGCCCTGGCAACGCATTAAGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGA                                                         <  SRR4302540.2198405/94‑1 (MQ=60)
                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302540.2710169/1‑94 (MQ=60)
                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302540.8694695/1‑94 (MQ=60)
                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        <  SRR4302540.4474751/94‑1 (MQ=60)
                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        <  SRR4302540.5543575/94‑1 (MQ=60)
                                       AGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGGCACTGGAAAACCTAAAAGGCACAATCCATGAG                                                        >  SRR4302540.9861494/1‑94 (MQ=60)
                                        GAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGA                                                       >  SRR4302540.4033214/1‑94 (MQ=60)
                                        GAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGA                                                       >  SRR4302540.7971842/1‑94 (MQ=60)
                                          AGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAA                                                     <  SRR4302540.1412005/94‑1 (MQ=60)
                                          AGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAA                                                     >  SRR4302540.9256984/1‑94 (MQ=60)
                                          AGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAA                                                     >  SRR4302540.2360499/1‑94 (MQ=60)
                                          AGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAA                                                     <  SRR4302540.3602182/94‑1 (MQ=60)
                                           GAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAA                                                    >  SRR4302540.2546597/1‑94 (MQ=60)
                                           GAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAA                                                    <  SRR4302540.7267796/94‑1 (MQ=60)
                                            AAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAA                                                   >  SRR4302540.1525870/1‑94 (MQ=60)
                                             AAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAAT                                                  <  SRR4302540.3832931/94‑1 (MQ=60)
                                             AAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAAT                                                  >  SRR4302540.7082480/1‑94 (MQ=60)
                                             AAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAAT                                                  >  SRR4302540.6754579/1‑94 (MQ=60)
                                             AAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAAT                                                  <  SRR4302540.4486447/94‑1 (MQ=60)
                                               AGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAA                                                <  SRR4302540.9923152/94‑1 (MQ=60)
                                                  CACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAA                                             >  SRR4302540.9474935/1‑94 (MQ=60)
                                                  CACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGAACAATCCATGAGAAAAATAAAAA                                             >  SRR4302540.5560076/1‑94 (MQ=60)
                                                   tctgaCAACGCAATATGGTTTTGCCTGTGGTGTTCAACACTGTTCCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC                                            <  SRR4302540.8237396/89‑1 (MQ=60)
                                                   ACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC                                            >  SRR4302540.8446159/1‑94 (MQ=60)
                                                   ACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAAC                                            <  SRR4302540.6792405/94‑1 (MQ=60)
                                                    CTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACA                                           >  SRR4302540.2166835/1‑94 (MQ=60)
                                                    CTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACA                                           <  SRR4302540.5507493/94‑1 (MQ=60)
                                                     TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          >  SRR4302540.1005248/1‑94 (MQ=60)
                                                     TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302540.2871710/94‑1 (MQ=60)
                                                     TGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACAT                                          <  SRR4302540.3410/94‑1 (MQ=60)
                                                      GGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATG                                         <  SRR4302540.3647308/94‑1 (MQ=60)
                                                      GGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATG                                         <  SRR4302540.6150796/94‑1 (MQ=60)
                                                       GCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGG                                        <  SRR4302540.7792357/94‑1 (MQ=60)
                                                        CAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       >  SRR4302540.269641/1‑94 (MQ=60)
                                                        CAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       >  SRR4302540.9495310/1‑94 (MQ=60)
                                                        CAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       >  SRR4302540.755954/1‑94 (MQ=60)
                                                        CAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       <  SRR4302540.2226099/94‑1 (MQ=60)
                                                        CAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGA                                       >  SRR4302540.10143258/1‑94 (MQ=60)
                                                         AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      >  SRR4302540.1058807/1‑94 (MQ=60)
                                                         AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      <  SRR4302540.3854601/94‑1 (MQ=60)
                                                         AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      <  SRR4302540.5986210/94‑1 (MQ=60)
                                                         AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      <  SRR4302540.2004481/94‑1 (MQ=60)
                                                         AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      >  SRR4302540.1032506/1‑94 (MQ=60)
                                                         AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      >  SRR4302540.591327/1‑94 (MQ=60)
                                                         AACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGAT                                      <  SRR4302540.9128195/94‑1 (MQ=60)
                                                          ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     <  SRR4302540.847579/94‑1 (MQ=60)
                                                          ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     <  SRR4302540.1562012/94‑1 (MQ=60)
                                                          ACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATT                                     <  SRR4302540.2719630/94‑1 (MQ=60)
                                                           CGCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTA                                    <  SRR4302540.3962380/94‑1 (MQ=60)
                                                            GCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTAC                                   <  SRR4302540.8140994/94‑1 (MQ=60)
                                                            GCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTAC                                   <  SRR4302540.1931201/94‑1 (MQ=60)
                                                            GCATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTAC                                   >  SRR4302540.4400472/1‑94 (MQ=60)
                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  >  SRR4302540.2421668/1‑94 (MQ=60)
                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  >  SRR4302540.9358997/1‑94 (MQ=60)
                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  >  SRR4302540.7631281/1‑94 (MQ=60)
                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  >  SRR4302540.7546209/1‑94 (MQ=60)
                                                             CATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACT                                  >  SRR4302540.6346038/1‑94 (MQ=60)
                                                              ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302540.4872450/1‑94 (MQ=60)
                                                              ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302540.5669834/1‑94 (MQ=60)
                                                              ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 <  SRR4302540.6734367/94‑1 (MQ=60)
                                                              ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302540.2813307/1‑94 (MQ=60)
                                                              ATTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTC                                 >  SRR4302540.4273780/1‑94 (MQ=60)
                                                               TTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCA                                >  SRR4302540.5866617/1‑94 (MQ=60)
                                                               TTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCA                                >  SRR4302540.8875336/1‑94 (MQ=60)
                                                               TTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCA                                >  SRR4302540.1303277/1‑94 (MQ=60)
                                                               TTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCA                                <  SRR4302540.939475/94‑1 (MQ=60)
                                                               TTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCA                                >  SRR4302540.7214522/1‑94 (MQ=60)
                                                               TTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCA                                >  SRR4302540.6494472/1‑94 (MQ=60)
                                                               TTATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCA                                <  SRR4302540.5886052/94‑1 (MQ=60)
                                                                TATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAA                               >  SRR4302540.4625934/1‑94 (MQ=60)
                                                                TATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAA                               >  SRR4302540.8801473/1‑94 (MQ=60)
                                                                 ATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAA                              >  SRR4302540.9699991/1‑94 (MQ=60)
                                                                 ATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAA                              >  SRR4302540.7729847/1‑94 (MQ=60)
                                                                 ATGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAA                              >  SRR4302540.4924867/1‑94 (MQ=60)
                                                                  TGGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAG                             >  SRR4302540.7308602/1‑94 (MQ=60)
                                                                   GGTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGG                            >  SRR4302540.3740462/1‑94 (MQ=60)
                                                                    GTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGT                           <  SRR4302540.674950/94‑1 (MQ=60)
                                                                    GTTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGG                           >  SRR4302540.8373713/1‑94 (MQ=60)
                                                                     TTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTG                          <  SRR4302540.4744352/94‑1 (MQ=60)
                                                                     TTTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTG                          <  SRR4302540.3009970/94‑1 (MQ=60)
                                                                      TTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGA                         >  SRR4302540.595678/1‑94 (MQ=60)
                                                                      TTTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGA                         <  SRR4302540.1496032/94‑1 (MQ=60)
                                                                       TTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACGATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGAT                        <  SRR4302540.9166168/94‑1 (MQ=60)
                                                                       TTGCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGAT                        <  SRR4302540.8739141/94‑1 (MQ=60)
                                                                         GCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGG                      <  SRR4302540.175134/94‑1 (MQ=60)
                                                                         GCCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGG                      >  SRR4302540.5772186/1‑94 (MQ=60)
                                                                          CCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGC                     >  SRR4302540.5710109/1‑94 (MQ=60)
                                                                          CCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGC                     <  SRR4302540.2337410/94‑1 (MQ=60)
                                                                          CCTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGCC                     >  SRR4302540.3267300/1‑94 (MQ=60)
                                                                          CCTGTGGTGTTCAACACTGCACCAGGGCACTGGAAAACCTAAAAGGCACAATCCATAAGAAAAATAAAAACATGGATTACTCAAAGGTGAgggg                     >  SRR4302540.1440815/1‑90 (MQ=60)
                                                                           CTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCG                    >  SRR4302540.5784863/1‑94 (MQ=60)
                                                                           CTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCG                    >  SRR4302540.7122700/1‑94 (MQ=60)
                                                                           CTGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGGGATGGCG                    >  SRR4302540.475563/1‑94 (MQ=60)
                                                                            TGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGT                   >  SRR4302540.3456141/1‑94 (MQ=60)
                                                                            TGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGT                   <  SRR4302540.9457222/94‑1 (MQ=60)
                                                                            TGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGT                   >  SRR4302540.9309092/1‑94 (MQ=60)
                                                                            TGTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGT                   <  SRR4302540.7656216/94‑1 (MQ=60)
                                                                             GTGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTT                  <  SRR4302540.1328527/94‑1 (MQ=60)
                                                                              TGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTC                 >  SRR4302540.1239300/1‑94 (MQ=60)
                                                                              TGGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTC                 >  SRR4302540.4636614/1‑94 (MQ=60)
                                                                               GGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCT                <  SRR4302540.6247733/94‑1 (MQ=60)
                                                                               GGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCT                <  SRR4302540.9901904/94‑1 (MQ=60)
                                                                               GGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCT                <  SRR4302540.1683977/94‑1 (MQ=60)
                                                                               GGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCT                >  SRR4302540.9301648/1‑94 (MQ=60)
                                                                               GGTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCT                >  SRR4302540.7516543/1‑94 (MQ=60)
                                                                                GTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTA               >  SRR4302540.2575631/1‑94 (MQ=60)
                                                                                GTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTA               >  SRR4302540.5308391/1‑94 (MQ=60)
                                                                                GTGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTA               >  SRR4302540.9114724/1‑94 (MQ=60)
                                                                                 TGTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTAC              <  SRR4302540.6772601/94‑1 (MQ=60)
                                                                                  GTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACC             >  SRR4302540.6704542/1‑94 (MQ=60)
                                                                                  GTTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACC             >  SRR4302540.8198273/1‑94 (MQ=60)
                                                                                   TTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCA            >  SRR4302540.2609414/1‑94 (MQ=60)
                                                                                   TTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCA            >  SRR4302540.10028704/1‑94 (MQ=60)
                                                                                   GTCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCA            <  SRR4302540.7420672/94‑1 (MQ=60)
                                                                                    TCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           >  SRR4302540.9780180/1‑94 (MQ=60)
                                                                                    TCAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCAT           <  SRR4302540.687075/94‑1 (MQ=60)
                                                                                     CAACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATC          <  SRR4302540.3569704/94‑1 (MQ=60)
                                                                                      AACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCC         >  SRR4302540.6133985/1‑94 (MQ=60)
                                                                                       ACACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCA        >  SRR4302540.6819378/1‑94 (MQ=60)
                                                                                        TACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAT       >  SRR4302540.480029/1‑94 (MQ=60)
                                                                                        CACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTGCCATCCAT       <  SRR4302540.8017660/94‑1 (MQ=60)
                                                                                        CACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAT       <  SRR4302540.910149/94‑1 (MQ=60)
                                                                                        CACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAT       >  SRR4302540.2671709/1‑94 (MQ=60)
                                                                                        CACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCAT       >  SRR4302540.4048045/1‑94 (MQ=60)
                                                                                         ACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT      >  SRR4302540.2659065/1‑94 (MQ=60)
                                                                                         ACTGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATT      <  SRR4302540.7916794/94‑1 (MQ=60)
                                                                                           TGCACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTA    >  SRR4302540.9822194/1‑94 (MQ=60)
                                                                                             CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  SRR4302540.10128203/1‑94 (MQ=60)
                                                                                             CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  <  SRR4302540.2043409/94‑1 (MQ=60)
                                                                                             CACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  SRR4302540.3976535/1‑94 (MQ=60)
                                                                                             |                                                                                             
TACCGGCACAATATCGCTTTACTACTACTGGAATAACGAAGAAGAAAAGGCACTGGCAACGCATTATGGTTTTGCCTGTGGTGTTCAACACTGTACCAGGTCACTGGAAAACCTAAAAGGCACAATCCATGAGAAAAATAAAAACATGGATTACTCAAAGGTGATGGCGTTCTACCATCCATTTAAA  >  NC_000913/3873400‑3873586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑