Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,875,213 T→C intergenic (‑120/+120) b3698 ← / ← gyrB hypothetical protein/DNA gyrase subunit B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,875,2130TC99.4% 1561.2 / ‑4.6 485intergenic (‑120/+120)b3698/gyrBhypothetical protein/DNA gyrase subunit B
Reads supporting (aligned to +/- strand):  ref base T (2/1);  new base C (234/248);  total (236/249)
Fisher's exact test for biased strand distribution p-value = 6.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 533 total aligned reads displayed.

ACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC  >  NC_000913/3875123‑3875302
                                                                                          |                                                                                            
aCCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGc                                                                                            >  2:9586676/1‑93 (MQ=255)
  ccAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCg                                                                                          <  1:2192136/93‑1 (MQ=255)
  ccAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCg                                                                                          >  1:9757525/1‑93 (MQ=255)
   cAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCgg                                                                                         >  1:2865376/1‑93 (MQ=255)
       aaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgc                                                                                     >  1:8268096/1‑93 (MQ=255)
         gTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgcgg                                                                                   <  1:2726017/93‑1 (MQ=255)
          tataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgcggc                                                                                  <  1:4644737/93‑1 (MQ=255)
          tataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgcggc                                                                                  >  1:6090901/1‑93 (MQ=255)
           ataGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATgcggcg                                                                                 >  2:9700963/1‑93 (MQ=255)
              gATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGa                                                                              <  2:3768223/93‑1 (MQ=255)
              gATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGa                                                                              >  2:4973421/1‑93 (MQ=255)
               aTTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGaa                                                                             <  2:2005467/93‑1 (MQ=255)
                tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑c                                                                           >  1:8710796/1‑93 (MQ=255)
                tttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑c                                                                           >  1:1463193/1‑93 (MQ=255)
                 ttGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑g                                                                         >  1:3494017/1‑93 (MQ=255)
                  tGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑c                                                                       <  2:7328206/93‑1 (MQ=255)
                     gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGA‑C‑G‑ccct                                                                    >  1:2626549/1‑91 (MQ=255)
                     gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCtt                                                                    >  2:6915072/1‑93 (MQ=255)
                     gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCtt                                                                    >  2:10019635/1‑93 (MQ=255)
                     gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑C‑CCtt                                                                    >  2:8081250/1‑93 (MQ=255)
                      ggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTa                                                                   <  1:9297781/93‑1 (MQ=255)
                      ggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTa                                                                   <  2:1282577/93‑1 (MQ=255)
                       gatgatAATTGCGTATTGCAGAAATAAAACGGGCGGAGATGCTCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTAt                                                                  <  1:774720/93‑1 (MQ=38)
                         tgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGGCGGATGCGGCGTGGA‑G‑T‑CCCTATcc                                                                >  1:7606031/1‑93 (MQ=38)
                         tgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATcc                                                                >  1:4236165/1‑93 (MQ=255)
                         tgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATcc                                                                <  1:8141527/93‑1 (MQ=255)
                         tgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATcc                                                                >  1:4947818/1‑93 (MQ=255)
                         tgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATcc                                                                <  1:3015552/93‑1 (MQ=255)
                          gatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCg                                                               <  2:6006689/93‑1 (MQ=255)
                           atAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCgg                                                              <  1:2525769/93‑1 (MQ=255)
                            tAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGc                                                             <  2:2369160/93‑1 (MQ=255)
                             aaTTGCGGATTGCAGAAATAAAAAGGTCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGcc                                                            <  1:116701/93‑1 (MQ=255)
                              aTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGA‑C‑GCCCTTTTCCGGct                                                            >  2:5566267/1‑92 (MQ=255)
                               ttGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTa                                                          >  1:9871860/1‑93 (MQ=255)
                                 gCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACa                                                        <  2:7778735/93‑1 (MQ=255)
                                   ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACaaa                                                      <  1:10017747/93‑1 (MQ=255)
                                    gATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGGTTCGGCGGGGA‑A‑G‑CCCTATTCCGCCTACaaaa                                                     >  1:3698745/1‑93 (MQ=255)
                                     aTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAAGC‑C‑CCTTTTCCGCCCACCaaaa                                                     >  2:5844111/1‑93 (MQ=37)
                                     aTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAAt                                                    >  2:9911076/1‑93 (MQ=255)
                                      ttGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATc                                                   >  2:3142776/1‑93 (MQ=255)
                                      ttGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATc                                                   >  1:6693624/1‑93 (MQ=255)
                                      ttGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGAGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATc                                                   >  2:5180755/1‑93 (MQ=255)
                                       tGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCa                                                  <  2:7653546/93‑1 (MQ=255)
                                         cAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATg                                                <  1:598422/93‑1 (MQ=255)
                                          aGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGATGCGGCGTGAA‑A‑G‑CCTTATTCGGCCCACAAAATCATGa                                               >  1:9153918/1‑93 (MQ=255)
                                           gAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGGTGCGGCGTGGA‑CAG‑CCTTTTCC‑GCCTACAAAAACATTaa                                              >  1:7369490/1‑93 (MQ=25)
                                            aaaTAAAATGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGaaa                                             <  2:4005520/93‑1 (MQ=255)
                                            aaaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGaaa                                             >  2:5064250/1‑93 (MQ=255)
                                            aaaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGaaa                                             <  1:8625284/93‑1 (MQ=255)
                                            aaaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGaaa                                             <  1:7931768/93‑1 (MQ=255)
                                             aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGaaaa                                            >  2:1415293/1‑93 (MQ=255)
                                              aTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGGCTACAAAATCATGAAAAt                                           >  1:4770052/1‑93 (MQ=255)
                                                aaaaaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTc                                         <  2:8643318/93‑1 (MQ=255)
                                                aaaaaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTc                                         <  2:711277/93‑1 (MQ=255)
                                                 aaaaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGA‑A‑C‑ACTTATTCGGCCTACAAAAACAAGAAAAATCa                                        >  1:5336548/1‑93 (MQ=25)
                                                   aaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAAt                                      >  1:8574410/1‑93 (MQ=255)
                                                    aGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATa                                     >  2:6522914/1‑93 (MQ=255)
                                                    aGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCCGCGTGAA‑A‑G‑GCTTATTCGGCACTCCAAATACTGAAACTTCAATa                                     >  2:1076057/1‑93 (MQ=255)
                                                      ggCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACa                                   <  1:5141059/93‑1 (MQ=255)
                                                      ggCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACa                                   <  1:2919079/93‑1 (MQ=255)
                                                      ggCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACa                                   <  1:2363336/93‑1 (MQ=255)
                                                      ggCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑A‑G‑CCCTATCCCGCCTACAAAATCATGAAAAATCAATACa                                   >  1:5489480/1‑93 (MQ=25)
                                                      ggCGGAGATCATCTCCTCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACa                                   <  2:6732364/93‑1 (MQ=255)
                                                       gCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAAATCAATACAt                                  >  1:9621949/1‑93 (MQ=255)
                                                        gggAGCTGACCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACAtt                                 <  2:8877108/92‑1 (MQ=21)
                                                          gagaTGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGc                               >  2:6195679/1‑93 (MQ=255)
                                                          gagaTGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGACGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGc                               >  1:9551703/1‑93 (MQ=255)
                                                           agaTGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCa                              <  1:3237266/93‑1 (MQ=255)
                                                             tggatCCCCGGTCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CATTATCCGGCCTACAAAATCATGAGAATTCAATACATTGCAAg                            <  2:1911038/91‑1 (MQ=18)
                                                               gatCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAt                          >  2:1716288/1‑93 (MQ=255)
                                                                atCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAtt                         <  1:9008221/93‑1 (MQ=255)
                                                                  ctcCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAtttt                       <  1:4123975/93‑1 (MQ=255)
                                                                   tcCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTc                      >  1:993598/1‑93 (MQ=255)
                                                                   tcCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTc                      <  1:6861528/93‑1 (MQ=255)
                                                                    ccGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCg                     <  2:473731/93‑1 (MQ=255)
                                                                     cGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGt                    <  2:2582207/93‑1 (MQ=255)
                                                                      gCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTa                   <  1:4492200/93‑1 (MQ=255)
                                                                      ccccTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTa                   <  2:3428695/92‑1 (MQ=255)
                                                                         cTTTTCTTATAGCTTCTCGCCGGGTGCGGCGTGAA‑A‑C‑CCATTTTCCGCCTCCCAAATCATGAAAAATCAAAAAAATACACGATTTTCCTAGGc                >  2:9039334/1‑93 (MQ=255)
                                                                         cTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATTCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTTGTAgac                >  2:4531815/1‑91 (MQ=21)
                                                                         cTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGc                <  1:1737326/93‑1 (MQ=255)
                                                                         cTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGc                <  1:5312420/93‑1 (MQ=255)
                                                                         cTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCCTATCCCGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGc                >  2:6432450/1‑93 (MQ=255)
                                                                          ttttCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGcc               >  2:6996794/1‑93 (MQ=255)
                                                                             tCTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGa            <  1:721832/93‑1 (MQ=255)
                                                                              cTTATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGAt           <  2:8234471/93‑1 (MQ=255)
                                                                              cTTATAGATTCTCGCCGGATGCGGCGTGAA‑T‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGAt           >  1:6454363/1‑93 (MQ=255)
                                                                               ttATAGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATa          <  1:5730861/93‑1 (MQ=255)
                                                                                 ataGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg        <  1:1564873/93‑1 (MQ=255)
                                                                                 ataGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg        <  2:2858900/93‑1 (MQ=255)
                                                                                 ataGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAg        >  2:1595270/1‑93 (MQ=255)
                                                                                  taGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGc       <  2:629594/93‑1 (MQ=255)
                                                                                   aGCTTCTCGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCg      <  1:7131068/93‑1 (MQ=255)
                                                                                     cttctcGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa    <  2:7413205/93‑1 (MQ=255)
                                                                                     cttctcGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa    <  2:9329270/93‑1 (MQ=255)
                                                                                      ttctcGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAg   >  1:1959461/1‑93 (MQ=255)
                                                                                       tctcGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAgc  <  1:3861903/93‑1 (MQ=255)
                                                                                       tctcGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAgc  >  2:5367800/1‑93 (MQ=255)
                                                                                       tctcGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAgc  <  2:4269096/93‑1 (MQ=255)
                                                                                       tctcGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAgc  >  1:8431167/1‑93 (MQ=255)
                                                                                          |                                                                                            
ACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAA‑C‑G‑CCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC  >  NC_000913/3875123‑3875302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 312 total aligned reads displayed.
TTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCAT  >  NC_000913/3875120‑3875306
                                                                                             |                                                                                             
TTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCATAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTC                                                                                               <  SRR4302540.671857/94‑1 (MQ=60)
TTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTC                                                                                               <  SRR4302540.1660132/94‑1 (MQ=60)
TTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTC                                                                                               <  SRR4302540.8504550/94‑1 (MQ=60)
 tccccaAAAAAATATAGATTGGCGGAATAATAATGGCGGATTGAAAAAAAAAAAAGGGGGGAGATGATCCCCCCCCTTTTCTTATAGCTTCTCG                                                                                              <  SRR4302540.8912138/88‑1 (MQ=19)
 TGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGTCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCG                                                                                              <  SRR4302540.2934090/94‑1 (MQ=60)
 TGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCG                                                                                              <  SRR4302540.9228947/94‑1 (MQ=60)
  GACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGC                                                                                             >  SRR4302540.3232740/1‑94 (MQ=60)
  GACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGC                                                                                             >  SRR4302540.1691673/1‑94 (MQ=60)
   ACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCC                                                                                            <  SRR4302540.7422274/94‑1 (MQ=60)
    CCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCG                                                                                           >  SRR4302540.9164374/1‑94 (MQ=60)
     CCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGG                                                                                          >  SRR4302540.2896467/1‑94 (MQ=60)
     CCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGG                                                                                          <  SRR4302540.3645518/94‑1 (MQ=60)
     CCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGG                                                                                          <  SRR4302540.2215811/94‑1 (MQ=60)
     CCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCCCCGG                                                                                          >  SRR4302540.4947536/1‑94 (MQ=60)
     CCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCACAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGG                                                                                          >  SRR4302540.5758388/1‑94 (MQ=60)
     CAAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGG                                                                                          <  SRR4302540.8919137/94‑1 (MQ=60)
       AAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGAT                                                                                        >  SRR4302540.6220589/1‑94 (MQ=60)
        AAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATGGCTTCTCGCCGGATC                                                                                       >  SRR4302540.8157378/1‑94 (MQ=60)
         AAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGC                                                                                      >  SRR4302540.8364164/1‑94 (MQ=60)
          AAGTATAGATGTGGGGGATGATAATGGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCG                                                                                     <  SRR4302540.9126891/94‑1 (MQ=60)
           AGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGG                                                                                    >  SRR4302540.7522278/1‑94 (MQ=60)
           AGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGG                                                                                    >  SRR4302540.4307889/1‑94 (MQ=60)
            GTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGC                                                                                   <  SRR4302540.7354538/94‑1 (MQ=60)
            GTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGC                                                                                   <  SRR4302540.2755422/94‑1 (MQ=60)
            GTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGC                                                                                   >  SRR4302540.6158691/1‑94 (MQ=60)
             TATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCG                                                                                  <  SRR4302540.4694454/94‑1 (MQ=60)
             TATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCG                                                                                  >  SRR4302540.10147298/1‑94 (MQ=60)
                AGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGA                                                                               >  SRR4302540.4522966/1‑94 (MQ=60)
                 GATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAA                                                                              <  SRR4302540.9612110/94‑1 (MQ=60)
                  ATTTGGGGGATGATAATTGCGGATGGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAC                                                                             <  SRR4302540.3737383/94‑1 (MQ=60)
                  ATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAC                                                                             <  SRR4302540.7827084/94‑1 (MQ=60)
                  ATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAC                                                                             >  SRR4302540.8811914/1‑94 (MQ=60)
                  ATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAC                                                                             <  SRR4302540.8605784/94‑1 (MQ=60)
                  ATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAC                                                                             >  SRR4302540.1479146/1‑94 (MQ=60)
                  ATTTGCGGGATGATAATTGCGGATTGAAGAAAAAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAC                                                                             <  SRR4302540.7315448/94‑1 (MQ=60)
                   TTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACG                                                                            >  SRR4302540.3532071/1‑94 (MQ=60)
                       GGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTT                                                                        <  SRR4302540.5361795/94‑1 (MQ=60)
                       CGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTT                                                                        >  SRR4302540.3395718/1‑94 (MQ=60)
                       CGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCCT                                                                        >  SRR4302540.2654961/1‑94 (MQ=60)
                       CGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGCACCCCTT                                                                        >  SRR4302540.2322135/1‑94 (MQ=60)
                       CGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTT                                                                        <  SRR4302540.3776685/94‑1 (MQ=60)
                       CGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTT                                                                        >  SRR4302540.2654962/1‑94 (MQ=60)
                        GGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCTCCCGATGCGGCGTGAACGCCCTA                                                                       >  SRR4302540.10018004/1‑94 (MQ=60)
                        GGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGacttt                                                                       >  SRR4302540.8067609/1‑89 (MQ=60)
                         GGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTAT                                                                      <  SRR4302540.4071657/94‑1 (MQ=60)
                         GGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTAT                                                                      >  SRR4302540.4584046/1‑94 (MQ=60)
                         GGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTAT                                                                      >  SRR4302540.9966744/1‑94 (MQ=60)
                           ATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCCTATCC                                                                    >  SRR4302540.4541027/1‑94 (MQ=60)
                           ATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGACCGCCTTATCC                                                                    >  SRR4302540.8307243/1‑94 (MQ=60)
                           ATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCC                                                                    <  SRR4302540.3939608/94‑1 (MQ=60)
                           ATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCC                                                                    <  SRR4302540.6079417/94‑1 (MQ=60)
                           ATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCC                                                                    <  SRR4302540.6623007/94‑1 (MQ=60)
                           ATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCC                                                                    >  SRR4302540.4282260/1‑94 (MQ=60)
                           ATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCC                                                                    >  SRR4302540.8552617/1‑94 (MQ=60)
                            TGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATCCG                                                                   >  SRR4302540.875006/1‑94 (MQ=60)
                            TGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCG                                                                   >  SRR4302540.2566684/1‑94 (MQ=60)
                            TGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCG                                                                   <  SRR4302540.3048708/94‑1 (MQ=60)
                            TGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGATGCGGCGTGAACGCCTTATCCG                                                                   >  SRR4302540.2566685/1‑94 (MQ=60)
                             GATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATtgcgcggggacgccctactacg                                                                  >  SRR4302540.3773514/1‑72 (MQ=60)
                             GATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGgggcgggacaaccctctccgc                                                                  >  SRR4302540.2205724/1‑73 (MQ=60)
                             GAAAATTTCGGATTGCAGAAAAAAAAAGGGCGGAGATGATCCCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGG                                                                  <  SRR4302540.1939743/94‑1 (MQ=60)
                              ATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGAcagggcgtcgagacactctccgaa                                                                 >  SRR4302540.207994/1‑70 (MQ=60)
                              ATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAaaccctataccgc                                                                 >  SRR4302540.3998852/1‑81 (MQ=60)
                              ATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                 >  SRR4302540.8679723/1‑94 (MQ=60)
                              ATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGC                                                                 <  SRR4302540.2553033/94‑1 (MQ=60)
                                 ATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTA                                                              >  SRR4302540.8801380/1‑94 (MQ=60)
                                  TTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAC                                                             >  SRR4302540.9759684/1‑94 (MQ=60)
                                   TGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACA                                                            <  SRR4302540.2025722/94‑1 (MQ=60)
                                    GCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAA                                                           >  SRR4302540.9668082/1‑94 (MQ=60)
                                     CGGATTGCAGAAATATAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGGTGCGGCGTGAACGCCCTATCCCGCCTACCAA                                                          >  SRR4302540.5667011/1‑94 (MQ=60)
                                     CGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAA                                                          >  SRR4302540.6517619/1‑94 (MQ=60)
                                      GGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGgttcggcggggaagccctattccgcctacaaaa                                                         >  SRR4302540.3739119/1‑61 (MQ=60)
                                      GGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGCTGCGGCGgggaggcctttttccggctccaaaa                                                         >  SRR4302540.5678864/1‑69 (MQ=60)
                                      GGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGGACGCCCTATTCGGCCTACAAAA                                                         >  SRR4302540.7698709/1‑94 (MQ=60)
                                      GGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA                                                         >  SRR4302540.9302923/1‑94 (MQ=60)
                                      GGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA                                                         >  SRR4302540.10043904/1‑94 (MQ=60)
                                      GGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCCACAAAA                                                         >  SRR4302540.2680403/1‑94 (MQ=60)
                                       GATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGTGGCGTGAACGCCTTATCCGGCCTACAAAAT                                                        >  SRR4302540.4521041/1‑94 (MQ=60)
                                       GATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAT                                                        <  SRR4302540.7168644/94‑1 (MQ=60)
                                       GATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAT                                                        <  SRR4302540.9382933/94‑1 (MQ=60)
                                       GATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAT                                                        <  SRR4302540.7885409/94‑1 (MQ=60)
                                        ATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGgggacccccttttccgccctccaaaaa                                                       >  SRR4302540.2312691/1‑67 (MQ=60)
                                        ATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGGCTACAAAATC                                                       >  SRR4302540.986178/1‑94 (MQ=60)
                                          TGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCAT                                                     <  SRR4302540.683262/94‑1 (MQ=60)
                                          TGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCAT                                                     >  SRR4302540.5384932/1‑94 (MQ=60)
                                          TGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCAT                                                     >  SRR4302540.3444485/1‑94 (MQ=60)
                                          TGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACCCCTTATCCcggcttcaaaaaaat                                                     >  SRR4302540.8022392/1‑79 (MQ=60)
                                           GCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATG                                                    <  SRR4302540.7153832/94‑1 (MQ=60)
                                           GCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATG                                                    <  SRR4302540.8224102/94‑1 (MQ=60)
                                            CAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGA                                                   <  SRR4302540.604842/94‑1 (MQ=60)
                                            CAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGA                                                   <  SRR4302540.4704539/94‑1 (MQ=60)
                                            CAAAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGA                                                   <  SRR4302540.2000093/94‑1 (MQ=60)
                                             AGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAA                                                  <  SRR4302540.3884947/94‑1 (MQ=60)
                                              GAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAA                                                 <  SRR4302540.9233597/94‑1 (MQ=60)
                                              GAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAA                                                 <  SRR4302540.8470087/94‑1 (MQ=60)
                                              GAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCATGAAA                                                 <  SRR4302540.7249542/94‑1 (MQ=60)
                                               AAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAA                                                <  SRR4302540.8725480/94‑1 (MQ=60)
                                                AATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGGCTACAAAATCATGAAAAT                                               >  SRR4302540.4821004/1‑94 (MQ=60)
                                                AATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAAT                                               >  SRR4302540.3152535/1‑94 (MQ=60)
                                                 ATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATT                                              >  SRR4302540.9267168/1‑94 (MQ=60)
                                                 ATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATT                                              <  SRR4302540.10007075/94‑1 (MQ=60)
                                                 ATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCCGGTGCGGCGTGGACGCCctttcccgcccaacaaaacatcaaaaat                                              >  SRR4302540.7522938/1‑66 (MQ=60)
                                                  TAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACCGCTTATCCGGCCTCCAAAATCCTGAAAAATC                                             >  SRR4302540.477005/1‑94 (MQ=60)
                                                   AAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCA                                            >  SRR4302540.5395041/1‑94 (MQ=60)
                                                    AAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGCTGCCGCGTGAACGCCTTCTCCGGCCTACAAAATCATGAAAATTCAA                                           >  SRR4302540.5011273/1‑94 (MQ=60)
                                                     AAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAAT                                          >  SRR4302540.8674036/1‑94 (MQ=60)
                                                     AAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAAT                                          <  SRR4302540.2946684/94‑1 (MQ=60)
                                                      AAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATA                                         <  SRR4302540.6642808/94‑1 (MQ=60)
                                                      AAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAACCCTTATCCGGCCTACAAAATCATGAGAATTCAATA                                         >  SRR4302540.6951436/1‑94 (MQ=60)
                                                       AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAC                                        <  SRR4302540.4208291/94‑1 (MQ=60)
                                                       AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAC                                        <  SRR4302540.8306583/94‑1 (MQ=60)
                                                       AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAC                                        <  SRR4302540.10116245/94‑1 (MQ=60)
                                                       AGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTGCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAC                                        <  SRR4302540.10116246/94‑1 (MQ=60)
                                                       AGGGCGGAGATGATCTCCGACCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAC                                        <  SRR4302540.9893548/94‑1 (MQ=60)
                                                        GGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACA                                       <  SRR4302540.4931463/94‑1 (MQ=60)
                                                        GGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCCTATCCCGCCTACAAAATCATGAAAAATCAATACA                                       >  SRR4302540.5549910/1‑94 (MQ=60)
                                                         GGCGGAGATGATCTCCTCCCTTGTCGTATAGCTTCTCGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACAT                                      <  SRR4302540.5196744/94‑1 (MQ=53)
                                                         GGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACAT                                      <  SRR4302540.2388788/94‑1 (MQ=60)
                                                         GGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACAT                                      <  SRR4302540.2951048/94‑1 (MQ=60)
                                                         GGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACAT                                      >  SRR4302540.9735363/1‑94 (MQ=60)
                                                          GCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATT                                     <  SRR4302540.1771070/94‑1 (MQ=60)
                                                          GCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATT                                     <  SRR4302540.7232561/94‑1 (MQ=60)
                                                          GCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATT                                     <  SRR4302540.9416786/94‑1 (MQ=60)
                                                           CGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGgggaagcccttttccgccctccaaaacaataaaaattaaaacaatt                                    >  SRR4302540.8911980/1‑48 (MQ=60)
                                                           CGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTG                                    <  SRR4302540.1221805/94‑1 (MQ=60)
                                                            GGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACCAAATCATGAAAAATCAATACATTGC                                   >  SRR4302540.9664684/1‑94 (MQ=60)
                                                            GGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGC                                   >  SRR4302540.8095486/1‑94 (MQ=60)
                                                            GGAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAAAACATGAAAAATCAATACATTGC                                   >  SRR4302540.9059102/1‑94 (MQ=60)
                                                             GAGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCA                                  >  SRR4302540.6723195/1‑94 (MQ=60)
                                                              AGGTGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGCTGCGGCGTGAACCCCTAATCAGGCCCACAACATCATGGAAATTAAATACATTGCAA                                 >  SRR4302540.1727032/1‑94 (MQ=57)
                                                              AGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGTACCCCTTATTCGGCCTCCAAAATCATGAAAAatcaaaaaaatgcaa                                 >  SRR4302540.9635071/1‑79 (MQ=60)
                                                              AGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAA                                 >  SRR4302540.1727288/1‑94 (MQ=60)
                                                              AGATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAA                                 <  SRR4302540.3272477/94‑1 (MQ=60)
                                                               GATGATCTCCGCCCTTTTCTTATAGCTTCTCGGCGGATGCGGCGTGAACCCCTTATCCGGCCTGCAAAATCATGAAAATTCAATACATTGCAAG                                >  SRR4302540.3055270/1‑94 (MQ=60)
                                                               GATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGgtggggcgggcacacctcttaccgcccccacaatcatgaaaaatctaaataattcaaa                                >  SRR4302540.7382187/1‑36 (MQ=60)
                                                               GATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAA                                >  SRR4302540.2678384/1‑94 (MQ=60)
                                                                ATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACCAAATCATGAAAATTCAATACATTGCAAGA                               >  SRR4302540.6497657/1‑94 (MQ=60)
                                                                ATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGA                               >  SRR4302540.1151663/1‑94 (MQ=60)
                                                                ATGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAAATTGCAAGA                               >  SRR4302540.6113350/1‑94 (MQ=60)
                                                                 TGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAT                              >  SRR4302540.9774407/1‑94 (MQ=60)
                                                                 TGATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAT                              <  SRR4302540.694546/94‑1 (MQ=60)
                                                                 AGATCTCCTCACTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGTACTACAAAATCATGAAAATTCAATACATTGCAAGAT                              <  SRR4302540.8712498/94‑1 (MQ=56)
                                                                  GATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATT                             >  SRR4302540.1283293/1‑94 (MQ=60)
                                                                  GATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATT                             <  SRR4302540.4276967/94‑1 (MQ=60)
                                                                  GATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATT                             <  SRR4302540.2471965/94‑1 (MQ=60)
                                                                   ATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTT                            >  SRR4302540.5378246/1‑94 (MQ=60)
                                                                   ATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTT                            <  SRR4302540.9420449/94‑1 (MQ=60)
                                                                   ATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTT                            <  SRR4302540.596585/94‑1 (MQ=60)
                                                                   ATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTT                            <  SRR4302540.9116290/94‑1 (MQ=60)
                                                                   ATCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAAATCATGAAAAATCAATACATTGCAAGATTT                            >  SRR4302540.394074/1‑94 (MQ=60)
                                                                    TCTCCGCCCTTTTCTTATAGCTTCTCGCCGGGTGCGGCGTGCAAGCCCTATTCCGCCTACAAAATCAAGAAAAATTAATACACTGCAAGATTTT                           >  SRR4302540.4173484/1‑94 (MQ=32)
                                                                    TCTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTT                           >  SRR4302540.2992189/1‑94 (MQ=60)
                                                                     CTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGgaaggcttttcccgcccccaaaatcatggaaaattaaaaaaattgaaaattttt                          >  SRR4302540.7494448/1‑40 (MQ=60)
                                                                     CTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTC                          <  SRR4302540.9838812/94‑1 (MQ=60)
                                                                     CTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTC                          >  SRR4302540.1003721/1‑94 (MQ=60)
                                                                     CTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTC                          <  SRR4302540.4168514/94‑1 (MQ=60)
                                                                     CTCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTC                          <  SRR4302540.539723/94‑1 (MQ=60)
                                                                      TCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCG                         >  SRR4302540.7904346/1‑94 (MQ=60)
                                                                      TCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCG                         <  SRR4302540.6775021/94‑1 (MQ=60)
                                                                      TCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCG                         <  SRR4302540.5258896/94‑1 (MQ=60)
                                                                      TCCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGACTACCAAATCATGAAAATTCAATAAATTGCAAGATTTTCT                         >  SRR4302540.5397694/1‑94 (MQ=60)
                                                                       CCGCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGT                        >  SRR4302540.1773176/1‑94 (MQ=60)
                                                                         GCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAG                      >  SRR4302540.5208637/1‑94 (MQ=60)
                                                                         GCCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAG                      <  SRR4302540.6845740/94‑1 (MQ=60)
                                                                          CTCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGG                     <  SRR4302540.1079883/94‑1 (MQ=60)
                                                                          CCCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGG                     <  SRR4302540.8341846/94‑1 (MQ=60)
                                                                           CCTTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAAAGCCTTTTCCGGCCTTCCAAATCATGAAAATTCAATACATTGCAAGATTTTTGTAGGC                    >  SRR4302540.4345448/1‑94 (MQ=60)
                                                                             TTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCT                  <  SRR4302540.2523712/94‑1 (MQ=60)
                                                                             TTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCT                  <  SRR4302540.8588016/94‑1 (MQ=60)
                                                                             TTTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCT                  <  SRR4302540.2788315/94‑1 (MQ=60)
                                                                              TTTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTG                 <  SRR4302540.7294903/94‑1 (MQ=60)
                                                                               TTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTTTCCGGCCTTCAAAATCAAGAACATTCAATACATTGCAAGATTTTTGTAAGCCTGA                >  SRR4302540.3410573/1‑94 (MQ=58)
                                                                               TTCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGA                >  SRR4302540.2898938/1‑94 (MQ=60)
                                                                                TCTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGAT               <  SRR4302540.2810076/94‑1 (MQ=60)
                                                                                 CTTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATA              <  SRR4302540.8784378/94‑1 (MQ=60)
                                                                                  TTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAA             <  SRR4302540.1210589/94‑1 (MQ=60)
                                                                                  TTATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAA             <  SRR4302540.5906508/94‑1 (MQ=60)
                                                                                   TATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAG            <  SRR4302540.1498104/94‑1 (MQ=60)
                                                                                   TATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGCCCTGATAAG            >  SRR4302540.3607182/1‑94 (MQ=60)
                                                                                    ATAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGC           <  SRR4302540.1582048/94‑1 (MQ=60)
                                                                                     TAGCTTCTCGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCG          >  SRR4302540.7801192/1‑94 (MQ=60)
                                                                                     TAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCG          <  SRR4302540.1498539/94‑1 (MQ=60)
                                                                                     TAGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCG          <  SRR4302540.5907636/94‑1 (MQ=60)
                                                                                      AGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGT         >  SRR4302540.5168505/1‑94 (MQ=60)
                                                                                      AGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATAAATTGCAAGATTTTCATAGGCCTGATAAGCGT         >  SRR4302540.877180/1‑94 (MQ=60)
                                                                                      AGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCAGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGT         >  SRR4302540.9883841/1‑94 (MQ=60)
                                                                                        CTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAG       <  SRR4302540.7499117/94‑1 (MQ=60)
                                                                                        CTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAG       >  SRR4302540.1980758/1‑94 (MQ=60)
                                                                                         TTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGG      >  SRR4302540.2370931/1‑94 (MQ=60)
                                                                                         TTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC      <  SRR4302540.546434/94‑1 (MQ=60)
                                                                                         TTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC      >  SRR4302540.5346222/1‑94 (MQ=60)
                                                                                         TTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC      >  SRR4302540.2989436/1‑94 (MQ=60)
                                                                                         TTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC      <  SRR4302540.4914538/94‑1 (MQ=60)
                                                                                         TTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGC      >  SRR4302540.8529044/1‑94 (MQ=60)
                                                                                          TCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCG     <  SRR4302540.4769561/94‑1 (MQ=60)
                                                                                           CTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGC    >  SRR4302540.4668320/1‑94 (MQ=60)
                                                                                             CGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCAT  <  SRR4302540.6277684/94‑1 (MQ=60)
                                                                                             CGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCAT  <  SRR4302540.7601342/94‑1 (MQ=60)
                                                                                             CGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCAT  <  SRR4302540.7753704/94‑1 (MQ=60)
                                                                                             CGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCAT  <  SRR4302540.849297/94‑1 (MQ=60)
                                                                                             |                                                                                             
TTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCAT  >  NC_000913/3875120‑3875306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑