Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	NC_000913	3,951,167	+GCG	coding (36/1818 nt)	ilvD →	dihydroxyacid dehydratase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3951166	33 (0.090)	275 (0.740) +GGC	102/176	1.3	89.5%	coding (35/1818 nt)	ilvD	dihydroxyacid dehydratase
*	?	NC_000913	3951167 =	33 (0.090)	275 (0.740) +GGC	102/176	1.3	89.5%	coding (36/1818 nt)	ilvD	dihydroxyacid dehydratase

Only 100 of 275 total aligned reads displayed.

AGACACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3951079‑3951166

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCC  >  NC_000913/3951167‑3951252

|||

 gatACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGGGCTGGGGCGCGCC                                                                                     >  2:2793005/4‑93

     CTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCGCCaccg                                                                                 <  1:3240686/93‑5

      TGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGG                                                                               <  1:9032369/93‑1

      TGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGG                                                                               <  2:9530520/93‑1

       GGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGA                                                                              <  1:217125/93‑1

        GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAA                                                                             <  2:9332332/93‑1

        GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAA                                                                             <  1:143349/93‑1

        GGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAA                                                                             <  1:4728966/93‑1

         GAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAAT                                                                            <  2:8838398/93‑1

         GAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAAGATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAAT                                                                            <  1:8188208/93‑1

          AGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATG                                                                           <  2:4771632/93‑1

          AGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATG                                                                           <  1:7159915/93‑1

           GTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGCGCTGTGGGGGGCCCCCCGGAtga                                                                           >  2:5763518/1‑90

            TAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGAC                                                                         <  1:8789643/93‑1

            TAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGAC                                                                         <  2:2075709/93‑1

            TAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGAC                                                                         <  2:7045279/93‑1

            TAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGAC                                                                         <  1:6727178/93‑1

              AATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCG                                                                       <  2:5081308/93‑1

              AATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTCGTGCGCTGTGGGGCGCCCCCCGG‑ATGACCG                                                                       >  2:3523017/1‑93

               ATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGA                                                                      <  1:4114481/93‑1

               ATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGA                                                                      <  2:1451317/93‑1

                 AAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGCTGTGGCGCGGCCCCCGG‑ATGAACGACc                                                                    >  2:5703263/1‑92

                   AGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCC                                                                  <  2:4201615/93‑1

                     TATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGA                                                                <  1:4291175/93‑1

                      ATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGAT                                                               <  2:6902986/93‑1

                       TGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATT                                                              <  2:16123/93‑1

                       TGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATT                                                              <  2:3991619/93‑1

                        GCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTT                                                             <  1:625383/93‑1

                         CCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTC                                                            <  1:8381607/93‑1

                          CTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGTGCGCTGTTTGGCGCCC‑CCGGGATGACCGACGCCGCTTTCG                                                           >  1:395741/1‑93

                            AAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGT                                                         <  1:9520080/93‑1

                             AGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTA                                                        <  2:741345/93‑1

                             AGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTA                                                        <  2:8271535/93‑1

                             AGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTA                                                        <  2:6194207/93‑1

                               TACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCGGGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGAGTTCGGTCAG                                                      >  2:55644/1‑93

                                ACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGC                                                     <  2:4495654/93‑1

                                   cTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGA                                                  <  1:2853884/92‑1

                                   GTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGGGCGCTGTGGGGCG‑CCACCGGCATGACCGACGCCGATTTTTGTAAGCCGA                                                  >  2:9918396/1‑93

                                     TCCGCCACCACCGCTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATT                                                <  2:5266367/93‑1

                                      CCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTA                                               <  2:318330/93‑1

                                      CCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTA                                               <  1:6870954/93‑1

                                      CCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTA                                               <  1:6515661/93‑1

                                      CCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTA                                               <  2:436758/93‑1

                                       CGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTAT                                              <  2:2487467/93‑1

                                       CGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTAT                                              <  2:8042802/93‑1

                                        cCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                             <  1:7842296/92‑1

                                        GCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATC                                             <  1:1000378/93‑1

                                          CACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGC                                           <  2:4302623/93‑1

                                          CACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGC                                           <  2:5343164/93‑1

                                              cCCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTT                                       <  1:9914012/92‑1

                                                CACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGT                                     <  1:1981066/93‑1

                                                 ACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTG                                    <  1:7371279/93‑1

                                                  CTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGA                                   <  2:3699558/93‑1

                                                   TCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAA                                  <  2:4875043/93‑1

                                                   TCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAA                                  <  1:8428318/93‑1

                                                   TCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAA                                  <  2:2316798/93‑1

                                                   TCATGGGCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAA                                  <  1:6894905/93‑1

                                                    CATGGTCGTAATATGGCGGGGGCTCGTGCGCTGTGGGGCG‑CCACCGGGATGAACGCCGCCGATTTCGGTAAGCCGATTATCGCGGGTGTGAAC                                 >  2:839785/1‑93

                                                     ATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACT                                <  2:10023886/93‑1

                                                     ATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACT                                <  1:7285268/93‑1

                                                     ATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGAATATCGAGGTTGAGAACa                                <  2:8986892/93‑2

                                                      TGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTGAGCCAATTATCGCGGTTGTGAACTC                               <  2:2386372/93‑1

                                                      TGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTC                               <  1:3470196/93‑1

                                                      TGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGACTATCGCGGTTGTGAACTC                               <  2:9691214/93‑1

                                                       GGTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCG                              <  1:7473566/93‑1

                                                        GTCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGT                             <  1:1693202/93‑1

                                                         TCGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTT                            <  1:3603921/93‑1

                                                          CGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTC                           <  1:1792864/93‑1

                                                          CGTAATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTC                           <  2:9174665/93‑1

                                                             AATATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACC                        <  1:8562970/93‑1

                                                               TATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGGTTATCGCGGTTGTGAACTCGTTCACCCA                      >  1:80841/1‑93

                                                               TATGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCA                      <  1:5585093/93‑1

                                                                 TGGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAT                    <  1:8119394/93‑1

                                                                  GGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCTATT                   >  1:6991369/1‑93

                                                                  GGCGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATT                   <  2:1240681/93‑1

                                                                    CGGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTG                 <  1:6755444/93‑1

                                                                     GGGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGT                <  1:5097560/93‑1

                                                                      GGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCATCCAATTTGTA               >  2:3113339/1‑93

                                                                      GGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTA               <  2:9427567/93‑1

                                                                      GGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTA               <  2:1756244/93‑1

                                                                      GGTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTA               >  1:5402462/1‑93

                                                                       GTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC              <  1:3302602/93‑1

                                                                       GTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC              <  1:3054709/93‑1

                                                                       GTGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTAC              <  2:1968819/93‑1

                                                                        TGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACC             <  1:9754887/93‑1

                                                                        TGCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACC             <  2:8934620/93‑1

                                                                         GCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCG            <  1:9306473/93‑1

                                                                         GCTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCG            >  1:5981575/1‑93

                                                                          CTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGG           >  2:7321593/1‑93

                                                                          CTCGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGG           <  1:1528870/93‑1

                                                                            CGTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGT         <  1:3892270/93‑1

                                                                             GTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCCCCCACTTTGTACCGGGgc        >  2:8136547/1‑91

                                                                             GTGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTC        <  1:2440001/93‑1

                                                                              TGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCA       >  1:2658756/1‑93

                                                                              TGCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCA       <  1:6142984/93‑1

                                                                               GCGCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAC      <  1:1239504/93‑1

                                                                                 GCTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGT    <  1:3661181/93‑1

                                                                                  CTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTC   <  1:9624313/93‑1

                                                                                  CTGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTC   <  1:5673565/93‑1

                                                                                   TGTGGCGCG‑CCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCC  <  2:7788522/93‑1

|||

AGACACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTCGTGCGCTGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3951079‑3951166

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCACCGGAATGACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCACGTCC  >  NC_000913/3951167‑3951252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A