Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,548	1 bp→GG	intergenic (‑117/‑744)	ppiC ← / → rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,547	1	.	G	94.6%	1072.4 / 48.4	351	intergenic (‑116/‑745)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base . (9/10); new base G (173/159); total (182/169)
Fisher's exact test for biased strand distribution p-value = 8.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.77e-01
*	NC_000913	3,957,548	0	T	G	100.0%	1136.3 / NA	352	intergenic (‑117/‑744)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (182/170); total (182/170)

Only 100 of 375 total aligned reads displayed.

TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑GC‑‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957470‑3957627

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 aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGT‑ccc                                                                    >  2:8228530/1‑92 (MQ=255)

  gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGT‑ccct                                                                   >  1:5101302/1‑91 (MQ=255)

      gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAg                                                                >  1:9662376/1‑93 (MQ=255)

       aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAgg                                                               <  1:3495639/93‑1 (MQ=255)

        tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGTCCGGGAAATCCGG‑GCT‑TCGCAGGTCCCTCAAggg                                                              >  1:2050685/1‑93 (MQ=255)

        tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAggg                                                              >  2:4901685/1‑93 (MQ=255)

        tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAggg                                                              <  1:8020287/93‑1 (MQ=255)

        tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAggg                                                              <  2:6340044/93‑1 (MQ=255)

           gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGgag                                                           >  1:3579507/1‑93 (MQ=255)

              gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGaaa                                                        <  2:2545914/93‑1 (MQ=255)

                tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAAc                                                      <  2:4634915/93‑1 (MQ=255)

                tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAAc                                                      >  2:4023552/1‑93 (MQ=255)

                 gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACt                                                     >  1:6258238/1‑93 (MQ=255)

                  cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGGAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACtt                                                    >  1:3096040/1‑93 (MQ=255)

                  cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACtt                                                    <  1:2465110/93‑1 (MQ=255)

                   tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                   <  2:1252928/93‑1 (MQ=255)

                   tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                   <  1:6056807/93‑1 (MQ=255)

                   tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                   <  2:5984497/93‑1 (MQ=255)

                   tAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                   >  1:10004361/1‑93 (MQ=255)

                   tAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTa                                                   >  2:9078832/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGTTCCCTCAAGGGGAGAAAACTTAg                                                  >  2:5607834/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                  >  2:376056/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                  <  2:6145294/93‑1 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                  >  1:5536160/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                  <  2:7310894/93‑1 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGCCTGGTACATATATGGCAAACGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAg                                                  <  2:7582422/93‑1 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGc                                               <  2:5056302/93‑1 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGc                                               <  1:6984334/93‑1 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                              <  2:3647678/93‑1 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                              <  2:5381796/93‑1 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                              >  2:5829130/1‑93 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                              >  2:1919835/1‑93 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCCCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc                                              >  1:4874949/1‑93 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCCAGGGGAGAAAACTTAggggc                                              >  2:5234684/1‑91 (MQ=255)

                         aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCct                                             <  2:2927154/93‑1 (MQ=255)

                         aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCct                                             <  1:1421293/93‑1 (MQ=255)

                          aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc                                            <  1:5839686/93‑1 (MQ=255)

                          aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc                                            >  2:9815086/1‑93 (MQ=255)

                          aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc                                            <  1:1150388/93‑1 (MQ=255)

                           ttGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctct                                           >  1:8818324/1‑93 (MQ=255)

                            tgacagtaagGGAGTGGCTGGTACATAGATGGCAGAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                          <  1:7470414/90‑1 (MQ=255)

                            tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                          <  1:4545668/93‑1 (MQ=255)

                            tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTa                                          <  1:9429408/93‑1 (MQ=255)

                             gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt                                         >  2:7870572/1‑93 (MQ=255)

                             gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt                                         <  1:7413912/93‑1 (MQ=255)

                             gtcaggcgGGGGGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt                                         <  2:2013134/93‑1 (MQ=255)

                              tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        <  2:9882761/93‑1 (MQ=255)

                              tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        <  2:4693615/93‑1 (MQ=255)

                              tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        <  2:1472878/93‑1 (MQ=255)

                              tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg                                        <  2:8044759/93‑1 (MQ=255)

                               cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                       <  1:4300687/93‑1 (MQ=255)

                               cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                       <  1:6390645/93‑1 (MQ=255)

                                agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg                                      <  1:7873785/93‑1 (MQ=255)

                                 gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc                                     >  2:8642683/1‑93 (MQ=255)

                                  tcagGGAGTGGCTGGTACATATATTGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAAGGGAGGAAACTTAGGGCCTCTATGGGCt                                    >  2:848006/1‑93 (MQ=255)

                                  tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                    >  1:2795195/1‑93 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                  >  2:9141824/1‑93 (MQ=255)

                                     gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                 >  1:504230/1‑93 (MQ=255)

                                      ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                <  1:8527345/93‑1 (MQ=255)

                                      ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                >  2:6423936/1‑93 (MQ=255)

                                         gTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt                             >  2:4152423/1‑93 (MQ=255)

                                         gTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGAGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt                             <  1:6745581/93‑1 (MQ=255)

                                          gggCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                            <  1:725799/92‑1 (MQ=255)

                                           ggCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa                           <  1:872604/93‑1 (MQ=255)

                                            gCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                          <  1:4670283/93‑1 (MQ=255)

                                             cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                         <  2:6256536/93‑1 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                        >  1:1659723/1‑93 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAGCTTAGGTCCTCTATGGGCTACAAAGTCATTAt                       <  1:7792824/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       <  1:7167195/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       >  2:4322161/1‑93 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       >  2:6039658/1‑93 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       >  1:3830638/1‑93 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       >  1:2965123/1‑93 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       <  2:1673365/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                       >  1:9988822/1‑93 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                      >  1:4796843/1‑93 (MQ=255)

                                                  aCATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                    <  1:9814052/93‑1 (MQ=255)

                                                  aCATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                    <  1:2141926/93‑1 (MQ=255)

                                                  aCATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                    >  1:8372158/1‑93 (MQ=255)

                                                   cATATATGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                   <  2:9552733/93‑1 (MQ=255)

                                                    atatatGGCAAAAGCCAGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATTGGCTACAAAGTCATTATCgggg                  <  2:7742023/93‑1 (MQ=255)

                                                     tatatGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                 >  1:6930926/1‑93 (MQ=255)

                                                      atatGGCAAAAGCCCGGAAAATCC‑G‑GCCTTCTCAGGTCCCTCAAGGGGAGAAAACTTAGGCCCTCTATGGGCTACAAAGTCATTATCGGGGAt                <  1:2646983/93‑1 (MQ=255)

                                                       tatGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg               >  1:7647568/1‑93 (MQ=255)

                                                        atGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg              >  2:1207331/1‑93 (MQ=255)

                                                        atGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg              >  2:7430311/1‑93 (MQ=255)

                                                         tGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt             >  1:3966751/1‑93 (MQ=255)

                                                         tGGCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt             <  2:8432336/93‑1 (MQ=255)

                                                           gCAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta           <  2:3366293/93‑1 (MQ=255)

                                                            cAAAAGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat          <  1:5315617/93‑1 (MQ=255)

                                                             aaaaGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt         >  2:4362781/1‑93 (MQ=255)

                                                               aaGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt       >  2:2952948/1‑93 (MQ=255)

                                                               aaGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt       <  1:1817530/93‑1 (MQ=255)

                                                               aaGCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt       >  1:1036265/1‑93 (MQ=255)

                                                                 gCCGGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat     <  2:7223480/93‑1 (MQ=255)

                                                                 gCCCGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat     <  2:6766312/93‑1 (MQ=255)

                                                                  cccGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt    <  2:6515201/93‑1 (MQ=255)

                                                                   ccGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   >  1:9158237/1‑93 (MQ=255)

                                                                   ccGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg   <  1:3258836/93‑1 (MQ=255)

                                                                    cGGAAAATCCGG‑GCT‑TCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt  <  1:9570262/93‑1 (MQ=255)

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TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑GC‑‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGT  >  NC_000913/3957470‑3957627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A