Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,958,261 |
Δ1 bp |
intergenic (‑830/‑31) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,958,261 | 0 | T | . | 75.8%
| 268.6
/ 116.2
| 127 | intergenic (‑830/‑31) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base T (2/0); major base . (27/67); minor base C (12/18); total (41/86) |
| Fisher's exact test for biased strand distribution p-value = 2.65e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 |
Only 100 of 226 total aligned reads displayed.
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑T‑CCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC > NC_000913/3958174‑3958352
|
tgtcttctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccccccc < 1:4418981‑M2/5‑1 (MQ=255)
gtcttctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatccccccccc > 2:4017505‑M2/88‑93 (MQ=255)
gtcttctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatccccccccc > 1:3860524‑M2/88‑93 (MQ=255)
gtcttctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatccccccccc < 1:5560728‑M2/6‑1 (MQ=255)
gtcttctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatccccccccc > 1:909017‑M2/88‑93 (MQ=255)
tcttctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccccccccc > 2:6797187‑M2/87‑93 (MQ=255)
tcttctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccccccccc > 1:2464082‑M2/87‑93 (MQ=255)
gcttctctctctgatttaaacatccgcagccagccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccccccccc < 2:7000622‑M2/7‑1 (MQ=255)
cttctctctctgatttaaacccccccagccaaccggttaggggcttccccgcggtcacattcaaatgcgattctgctacaacccccccccccc < 2:5543939‑M2/8‑1 (MQ=255)
ttctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccccccccccg < 1:7702664‑M2/9‑2 (MQ=255)
ttctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccccccccccc > 1:1672736‑M2/85‑93 (MQ=255)
ttctctctctgatttaaaaatccgcagccaaccggttagcggcttacacgcggtcacattcaaattcgattctgctacaatctccccccccat > 1:4260099‑M2/85‑91 (MQ=255)
ttctCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑T‑ACCCCCCCCGtt > 1:3655201/1‑93 (MQ=255)
tctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccccccccccgc > 2:3217542‑M2/84‑91 (MQ=255)
ctctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccccccccccccg > 1:2294093‑M2/83‑91 (MQ=255)
tctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccccccccccccgt > 2:5336010‑M2/82‑90 (MQ=255)
tctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCCCCCCCCCCtt > 2:6931421‑M2/82‑93 (MQ=255)
tctctctGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑T‑CCCCCCCCCGTTCGa > 1:4328790/1‑93 (MQ=255)
ctctctgatttaaacatccgccgccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGa < 1:1564872‑M2/13‑1 (MQ=255)
ctctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCg < 1:6315338‑M2/13‑1 (MQ=255)
ccttctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcccattcaaatgcgattctgcttcaaacccCC‑CCCCCCGTTCg < 2:89882‑M2/13‑1 (MQ=255)
tctctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCCCCCCCCCCTtcc > 2:5758004‑M2/80‑92 (MQ=255)
tctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCCTTCGAAg > 1:3486558‑M2/78‑93 (MQ=255)
ctgatttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGAt < 2:6594945‑M2/17‑1 (MQ=255)
tGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAC‑‑T‑CCCCCCCCCGTTCGAAGATTg < 1:1779126/93‑1 (MQ=255)
gATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑T‑CCCCCCCCCGTTCGAAGATTGa > 1:6615113/1‑93 (MQ=255)
tttaaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCCTCCGCAGATtgg > 1:9418767‑M2/73‑92 (MQ=255)
aaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCa < 1:8624318‑M2/24‑1 (MQ=255)
aaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCCTTCCACgattggaca > 1:4561550‑M2/70‑89 (MQ=255)
aaacatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCaa < 2:742600‑M2/24‑1 (MQ=255)
aacatccgccgccaaccggttagcggcttacacgcggtcacattcaaatgcggttctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCaa < 1:1065023‑M2/25‑1 (MQ=255)
acatccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAAt < 1:1436907‑M2/26‑1 (MQ=255)
aCATCCGCAGCCAACCGGTTAACGGCCTACCCGCGCTCACATTCAAATGCGATTCTGCCAAAA‑‑TCCCCCCCCCCGTTCGAAGATTGAGCAATa < 2:102749/93‑1 (MQ=255)
catccgcagccaacgggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGGTCGCAGATTTggcaaaaa > 2:7501632‑M2/67‑90 (MQ=255)
aatccccagcccacccgttagcggcttacacggcgtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATa < 2:528114‑M2/27‑1 (MQ=255)
atccgcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTCCGAGGATTGAGCAATac > 2:1651089‑M2/66‑93 (MQ=255)
ccgcagccaaccggttagcggcttacccgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATacac < 1:5683583‑M2/30‑1 (MQ=255)
ccccAGCCAACCCGTTTGCCGCCTTCCCGGCGTCACAATTAAATTCGATTCTGCTACAAACC‑CCCCCCCCCGTTCGAAGATTGAGCAATacac < 2:7342103/90‑1 (MQ=255)
gcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcgcCC‑CCCCCCGTTCCATGATTACGCACTAAacca > 1:9863444‑M2/62‑92 (MQ=255)
gcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTa < 1:8107813‑M2/32‑1 (MQ=255)
gcagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctactacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTa < 1:4708545‑M2/32‑1 (MQ=255)
ccAGCCAACCGGTTAGGGGGTTCCCCGGGGCCCAATTAAAATGGGTTTTGGTAAAAAC‑C‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTa < 2:2048274/92‑1 (MQ=255)
ccagccaaccggttaggggcttacacccggtcacattcaaatgcgattctgctaaaacccCCCCCCCCCGTTCGAAGATTGAGCAATACACCt < 2:1315960‑M2/33‑1 (MQ=255)
cagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTa < 2:3664626‑M2/33‑1 (MQ=255)
cagccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTAt < 2:483309‑M2/33‑1 (MQ=255)
gccaaccggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatccccCCCCCCCCCGTTCGAAGATTGAGCAATACACCTa < 2:1578511‑M2/34‑1 (MQ=255)
gcgcaaccggttcgcggcttacacgggttcacattcaaatgcgtttctgctacaacccCCCCCCCCCGTTCGAAGATTGAGCAATACACCTAt < 2:5658480‑M2/35‑1 (MQ=255)
gccaaccgggtagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATg < 1:6476733‑M2/35‑1 (MQ=255)
accggttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACCCGTATGAGTCt > 2:2997471‑M2/55‑93 (MQ=255)
gttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCCACCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTaa < 1:9590341‑M2/43‑1 (MQ=255)
gttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGACGAGTGGGGAATACACCTATGGGTCTaaa > 2:2753458‑M2/51‑93 (MQ=255)
gttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTaaa < 1:6284342‑M2/43‑1 (MQ=255)
ttagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAcc > 2:829100‑M2/50‑93 (MQ=255)
gtagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAc < 2:1150976‑M2/44‑1 (MQ=255)
tagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGACGATTGAGCAATACACCTATGCGCCTAAAccc > 2:6113260‑M2/49‑93 (MQ=255)
tagcggcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAccc < 2:8706114‑M2/45‑1 (MQ=255)
tAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑TCCCCCCCCCCCTTTTAAGGATTACCAATAAACCTATGCGGTTAAcccc > 2:6427257/1‑93 (MQ=255)
tAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑T‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAcccc < 1:5443746/93‑1 (MQ=255)
agcggcttacccggggtcacattcaaatgccattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAccc < 1:4180084‑M2/46‑1 (MQ=255)
agcggcttacacgcggtcacatttaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAAccc < 1:4673532‑M2/46‑1 (MQ=255)
gcttacacggggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGACGATTGAGCAATACACCTATGCGTCTAAACCCCGGcc > 2:6732199‑M2/44‑93 (MQ=255)
gcttacacgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGcc < 1:3010520‑M2/50‑1 (MQ=255)
tacacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCcaa < 2:5000836‑M2/53‑1 (MQ=255)
tcacgcggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCcaac < 1:3372139‑M2/54‑1 (MQ=255)
cacgcggttacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCcaacaa < 1:3272606‑M2/55‑1 (MQ=255)
cacgcggtccccttcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCcaaca < 1:7811873‑M2/55‑1 (MQ=255)
acgcggtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCcaacaac < 1:7434421‑M2/56‑1 (MQ=255)
ccgcggtcacattcaaatgcgattctgctacaacccCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCcaacaa < 1:3211655‑M2/57‑1 (MQ=255)
cggtcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCcaacaacaa < 2:4675230‑M2/59‑1 (MQ=255)
cgGTCACATTCAAATGCGATTCTGCTACAA‑‑T‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCCGCCAACAACAAGc > 1:9912845/1‑93 (MQ=255)
gtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCt < 1:7026253‑M2/61‑1 (MQ=255)
gtcacattcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGAAATACACCTCTGCTTCCAAACCACGGCCAACAACAAGCt > 2:637214‑M2/33‑93 (MQ=255)
gTCACATTCAAATGCGATTCTGCTACAA‑‑T‑CCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTg < 1:9807485/93‑1 (MQ=255)
tcacattcaaatgcgattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCt < 1:1282625‑M2/62‑1 (MQ=255)
cacaataaaaagcggttcttccacaatcccCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCt < 2:8037568‑M2/63‑1 (MQ=255)
cattcaaatggcattcttccacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTc < 2:1770762‑M2/65‑1 (MQ=255)
cattcaaatgctattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTc < 1:4087391‑M2/65‑1 (MQ=255)
ttcaaatgcgattctgctacaatcccC‑‑CCCCCCGTTCGCAGATTGAGCAACACACCTATGCGTCTAAACCCCGGCCCACAACAAACTGTCGaa > 1:6225552‑M2/27‑93 (MQ=255)
caaatgcgattctgctacaacccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAtt < 2:7157703‑M2/70‑1 (MQ=255)
aaatgcgattctgctacaaacccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAtt < 1:6366238‑M2/70‑1 (MQ=255)
atgggattctgctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCg < 2:3926401‑M2/72‑1 (MQ=255)
atgcgattctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGt < 2:7567549‑M2/72‑1 (MQ=255)
agatattcttctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAGCCCCGGCCAACAACAAGCTGTCGAATTCGtt < 2:6285136‑M2/73‑1 (MQ=255)
ccgttctgccaaaaacccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTa < 2:4433663‑M2/75‑1 (MQ=255)
gattctgttacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAc < 1:6667132‑M2/76‑1 (MQ=255)
attctgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACCCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCg < 1:8754726‑M2/77‑1 (MQ=255)
ttctgctacaaacccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGTTGTCGAATTCGTTACCg < 2:3102697‑M2/78‑1 (MQ=255)
atgtgcaacaaccccCCCCCCCCAGTTCAAAGATTGAGCAATACACCTATGCTTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTAcc < 2:5594756‑M2/78‑1 (MQ=255)
tctgctacaacccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGc < 1:3424805‑M2/80‑1 (MQ=255)
tgctacaatcccC‑‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAACCTGCCCAATTCGTTACCGGccc > 1:3310647‑M2/13‑93 (MQ=255)
cctccaaacccCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGcc < 2:4354739‑M2/82‑1 (MQ=255)
ctacaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGcccc < 1:3972083‑M2/83‑1 (MQ=255)
ctacaaacccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGcccc < 2:2125322‑M2/83‑1 (MQ=255)
ccaaccccCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCcct < 1:9286680‑M2/85‑1 (MQ=255)
acaatcccCC‑CCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCcctg < 1:8748104‑M2/85‑1 (MQ=255)
ccaaccCCCCCCCCCGTTCGAAGATTGAGCAATACCCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCcctgc < 2:7981559‑M2/87‑1 (MQ=255)
atccCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCcctgcct < 2:4713267‑M2/89‑1 (MQ=255)
aatcCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCcctgcct < 1:2857189‑M2/89‑1 (MQ=255)
cccCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCcctgcctg < 2:179460‑M2/90‑1 (MQ=255)
accCCCCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGTTGTCGAATTCGTTACCGGCCcctgcctg < 1:5166070‑M2/90‑1 (MQ=255)
|
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑T‑CCTCCCCCCGTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGC > NC_000913/3958174‑3958352
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CT‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCTG > NC_000913/3958168‑3958354
|
GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC < SRR4302540.6656475/94‑1 (MQ=60)
ATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑C < SRR4302540.80557/94‑1 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCAGATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CC < SRR4302540.3753272/94‑1 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CC < SRR4302540.6502073/94‑1 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CC < SRR4302540.7685784/94‑1 (MQ=60)
TTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CC < SRR4302540.7685785/94‑1 (MQ=60)
TTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCC < SRR4302540.8739224/94‑1 (MQ=60)
TTCGGTCTGCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCC < SRR4302540.2543285/94‑1 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCC > SRR4302540.9061602/1‑94 (MQ=60)
TCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCC > SRR4302540.5890726/1‑94 (MQ=60)
TGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC < SRR4302540.4466859/94‑1 (MQ=60)
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC > SRR4302540.3902486/1‑94 (MQ=60)
GGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC > SRR4302540.918654/1‑94 (MQ=60)
GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑C > SRR4302540.2490604/1‑94 (MQ=60)
GTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑C < SRR4302540.5621968/94‑1 (MQ=60)
CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccc > SRR4302540.1690915/1‑91 (MQ=60)
CTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑A‑CC‑‑CCCCCC‑‑GTT > SRR4302540.3695233/1‑94 (MQ=60)
TTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgt < SRR4302540.7790747/94‑5 (MQ=60)
TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTC < SRR4302540.7130286/94‑1 (MQ=60)
TCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccccg > SRR4302540.2318780/1‑89 (MQ=60)
CTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGA > SRR4302540.4375914/1‑94 (MQ=60)
TCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccccccc > SRR4302540.7234556/1‑87 (MQ=60)
TCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CA‑‑CCCCCCccccccc > SRR4302540.4401037/1‑87 (MQ=60)
CTCTCTTATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGA < SRR4302540.3570156/94‑1 (MQ=60)
CTCTCTGATTTAAACATCCGCCGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAA < SRR4302540.1582047/94‑1 (MQ=60)
CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGA < SRR4302540.6385666/94‑1 (MQ=60)
CTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccctcgca > SRR4302540.8910130/1‑86 (MQ=60)
CCCTCTGATTTAAACCTCCGCAGGCAACCGGTTAGCGGCTTACACGCGGTCAAATTCAAATGCGATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGA < SRR4302540.8388715/94‑1 (MQ=60)
tctttttTTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGGCACATTCAAACGCGATTCTGCCACAAC‑‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAG < SRR4302540.7238672/87‑1 (MQ=60)
TCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgctcgaa > SRR4302540.3228299/1‑85 (MQ=60)
CTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccttcgaag > SRR4302540.3524528/1‑84 (MQ=60)
TCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑CTTCGAAGAT > SRR4302540.10027468/1‑94 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAC‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGA < SRR4302540.1798442/94‑1 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATT < SRR4302540.5516814/94‑1 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑CACC‑‑CCCCCC‑‑GTTCGcataacg > SRR4302540.9480121/1‑87 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccctcgaagattg > SRR4302540.643737/1‑81 (MQ=60)
TGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGA > SRR4302540.6688375/1‑94 (MQ=60)
GATTTAAACATCCGCCGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAAGGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGA < SRR4302540.9327977/94‑1 (MQ=60)
GATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGA < SRR4302540.516565/94‑1 (MQ=60)
GATTTAAACAACCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGGTTCTGCTACAA‑‑‑TCCCC‑CC‑‑CCCCCC‑‑GTTCGAAGATT < SRR4302540.4254642/94‑1 (MQ=60)
ATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccctccgcagattgg > SRR4302540.9530721/1‑79 (MQ=60)
TTAAACATCCGCAGCCAACCGGTTAGCGGTTTACCCGGGGTCCCATTCAAATGCGATTTTTCTCCAACCCC‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAG < SRR4302540.4502601/94‑1 (MQ=30)
TTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCA < SRR4302540.136324/94‑1 (MQ=60)
TAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgtcggagatttacaga > SRR4302540.2624583/1‑76 (MQ=60)
TAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccttccacgattggaca > SRR4302540.4610833/1‑76 (MQ=60)
TAAACATCCGCAGCCAACCGGTTAGCGGCTTACACCGGGTCCCATTCAAATCCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCA < SRR4302540.9380584/94‑1 (MQ=60)
AAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAA < SRR4302540.8724499/94‑1 (MQ=60)
AAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccttcaagaatttggaaaa > SRR4302540.6750211/1‑75 (MQ=60)
AACATCCGCCGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGGTTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAAT < SRR4302540.1075872/94‑1 (MQ=60)
AACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCTCATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAAT < SRR4302540.3889975/94‑1 (MQ=60)
AACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATA < SRR4302540.4218476/94‑1 (MQ=60)
AACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccccgcgaacgatccagaat > SRR4302540.8574671/1‑74 (MQ=60)
ACCTCCGCAGCCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAAAGCCATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATA < SRR4302540.1523130/94‑1 (MQ=60)
ACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATA < SRR4302540.1452492/94‑1 (MQ=60)
CCTCCGCAGCCAACCGGTTTGCGGCTTACACGCGGTCACATTCAATTGCGATTCTGCTACCA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATCC < SRR4302540.9065361/94‑1 (MQ=60)
CATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACA < SRR4302540.5799773/94‑1 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGTTTGAGCAAaaac > SRR4302540.3252223/1‑90 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgtcggaaaatgtcttatagac > SRR4302540.4928642/1‑71 (MQ=60)
ATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccctcccaaggttaaacaaacc > SRR4302540.4979541/1‑71 (MQ=60)
TCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccctcgccaaatgcgcccaacac > SRR4302540.999164/1‑70 (MQ=60)
CCGCAGCCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACC < SRR4302540.5746158/94‑1 (MQ=60)
CCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACC < SRR4302540.6882453/94‑1 (MQ=60)
cccagCAACCGGTTAGGGGCCTACACGGGGTCCAATTCAAATGCGATTCTGCTTCAACC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTA < SRR4302540.3607062/89‑1 (MQ=33)
GCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTAT < SRR4302540.8201913/94‑1 (MQ=60)
GCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTACTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTAT < SRR4302540.4758867/94‑1 (MQ=60)
CCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTAT < SRR4302540.4462052/94‑1 (MQ=60)
CCAGCCAACCCGTTAGCGGCTTACACGCGGTCCCATTCAAATGCCATTCTGCTACAA‑‑‑TCCCC‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCT < SRR4302540.6710081/94‑1 (MQ=60)
CAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTAT < SRR4302540.9869166/94‑1 (MQ=60)
CAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccctcccaagcttgggcaatcacccat > SRR4302540.8240970/1‑66 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCG > SRR4302540.1621205/1‑94 (MQ=60)
AGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CA‑‑CCCCCCccgtctgaaaacttgagaacaacacctat > SRR4302540.5272405/1‑65 (MQ=60)
GGCAACCGGTTAGCGGCTTACCCGCGGTCACATTCAAATGCCATTCTGCTACAA‑‑‑TCCCC‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATG < SRR4302540.989776/94‑1 (MQ=60)
GCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAACC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGC < SRR4302540.4617027/94‑1 (MQ=60)
GCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGC < SRR4302540.1670702/94‑1 (MQ=60)
GCCAACCGGGTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGC < SRR4302540.6548793/94‑1 (MQ=60)
CCAACCGGTTAGCGGCTTACACGCGGTAACAGTCAAATGCGATTTTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCG < SRR4302540.143947/94‑1 (MQ=60)
CAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.6319993/94‑1 (MQ=60)
CAACCGGTGAGCGGCTTACACGCGGGCACATTCAAATGCGAGTCTTCTACAAACCC‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCG < SRR4302540.4517407/94‑1 (MQ=60)
ACCCGGTT‑GCGGCTTTCCCGCGGTCACATTCAAAAGCGATTCTTCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.3498630/94‑1 (MQ=57)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GGTCGAAGATTTAGCAATACACCTATGGGTC > SRR4302540.2715368/1‑94 (MQ=60)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.667842/94‑1 (MQ=60)
AACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccttcccaaattgagaaaaaaaccaatccgcc > SRR4302540.1979182/1‑61 (MQ=60)
acccgtttagggctttacccgcgtccccaTCAAATGCGATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.8578463/65‑1 (MQ=60)
ACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCT < SRR4302540.4600959/94‑1 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC < SRR4302540.7742796/94‑1 (MQ=60)
GGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GCTCGAAGATTGAGGAATACCCCTCTGAGTCTAAAC > SRR4302540.331033/1‑94 (MQ=60)
CGTTAGCGGCTTACCCGCGGTCACATTCAAATTCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAA < SRR4302540.9324049/94‑1 (MQ=60)
GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑CA‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAA < SRR4302540.9703533/94‑1 (MQ=60)
GTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC < SRR4302540.6354283/94‑1 (MQ=60)
GTTAGCGGCTGACCCGCGGTCCAATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAAC < SRR4302540.6477837/94‑1 (MQ=60)
TTAGCGGCTTACACACGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccgccacgaggtacgcataaaaccttcacctccacacc > SRR4302540.7356825/1‑55 (MQ=60)
TAGCGGCTTACCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302540.8801472/94‑1 (MQ=60)
TAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCG < SRR4302540.5503646/94‑1 (MQ=60)
AGCGGCTTACCCGGGGTCACATTCAAATGCCATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302540.4225483/94‑1 (MQ=60)
AGCGGCTTACACGCGGTCACATTTAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302540.4723547/94‑1 (MQ=60)
AGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCC < SRR4302540.6385187/94‑1 (MQ=60)
GGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCTAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCC < SRR4302540.9445948/94‑1 (MQ=60)
GCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCA < SRR4302540.3043639/94‑1 (MQ=60)
CTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccctttcggcgatggtagtacaaacacctgctgaccaccacccgc > SRR4302540.105759/1‑48 (MQ=60)
TTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GCTCGAAAGTTGAGCAACACACCTTAGCGCCTAAACCCCGGCCCAC > SRR4302540.4030049/1‑94 (MQ=40)
TTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccgcctcaagcttggccaaccacccatcgccgctaaaccccgcccaa > SRR4302540.9889205/1‑47 (MQ=60)
TTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccccctgcaccgacgtgtcaatctatcccacctcgcaacacgcgcgc > SRR4302540.7347344/1‑47 (MQ=60)
TTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCcccccgtgaaagattagggattaacctactggggcaaacacacggaa > SRR4302540.3539059/1‑47 (MQ=60)
TACACGCGGGCACATTCAAATGCGATTCTGCTACAACC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAAC < SRR4302540.5792011/94‑1 (MQ=60)
TCACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACA < SRR4302540.3408995/94‑1 (MQ=60)
ACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACA < SRR4302540.5624087/94‑1 (MQ=60)
CCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAA < SRR4302540.3384498/94‑1 (MQ=60)
CCCGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAAC < SRR4302540.3308328/94‑1 (MQ=60)
CACGCGGTTACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAAC < SRR4302540.3308326/94‑1 (MQ=60)
CACGCGGTCCCCTTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAA < SRR4302540.7903163/94‑1 (MQ=60)
CCGCGGTCACATTCAAATGCGATTCTGCTACAACC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAAC < SRR4302540.3246519/94‑1 (MQ=60)
ACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACA < SRR4302540.7517248/94‑1 (MQ=60)
GCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCCGCCAACAACAAGC > SRR4302540.10028625/1‑94 (MQ=60)
CGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCccggtggagaaatgagagaaaacaatagcgcgctcaaaccccgccacaaaaaaa > SRR4302540.8945796/1‑40 (MQ=60)
GGTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCATTGCGTCTAAACCCCGGCCAACAACcaact > SRR4302540.349298/1‑89 (MQ=60)
GGGCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCT < SRR4302540.3509009/94‑1 (MQ=60)
GTCACATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG < SRR4302540.7104307/94‑1 (MQ=60)
GTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGT < SRR4302540.9922280/94‑1 (MQ=60)
TCACCTTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGT < SRR4302540.494781/94‑1 (MQ=60)
TCACATTCAAATGCGATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTG < SRR4302540.1295851/94‑1 (MQ=60)
CATTCAAATGCTATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCG < SRR4302540.4131472/94‑1 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑TCCCC‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCG < SRR4302540.4490841/94‑1 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGCAGATTGAGCAACACACCTATGCGTCTAAACCCCGGCCCACAACAAACTGTCGAA > SRR4302540.6294793/1‑94 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATAACCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAA > SRR4302540.1194533/1‑94 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CT‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT > SRR4302540.289715/1‑94 (MQ=60)
ATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CC‑‑CCCCCCCAGTTCGAAGATTGAGCCATACAACTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGA > SRR4302540.5472245/1‑94 (MQ=60)
TCAAATGCGATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAAT < SRR4302540.8501249/94‑1 (MQ=60)
AAATGCTATTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTC < SRR4302540.6437122/94‑1 (MQ=60)
AAATGCGATTCTGCTACAAAC‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTC < SRR4302540.6437123/94‑1 (MQ=60)
CGATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC < SRR4302540.3605611/94‑1 (MQ=60)
GATTCTGTTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACC < SRR4302540.6740815/94‑1 (MQ=60)
GATTCTGCTACAAC‑‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCG < SRR4302540.4216494/94‑1 (MQ=60)
ATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACCCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGG < SRR4302540.8856283/94‑1 (MQ=60)
ATTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGG < SRR4302540.8856281/94‑1 (MQ=60)
TTCTGCTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGG < SRR4302540.8576350/94‑1 (MQ=60)
TTCTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGC < SRR4302540.1573239/94‑1 (MQ=60)
TCTGCTACAAC‑‑C‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCC < SRR4302540.3462038/94‑1 (MQ=60)
CTGCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAACCTGCCCAATTCGTTACCGGCCC > SRR4302540.3346914/1‑94 (MQ=60)
TGCTACAA‑‑‑T‑‑‑C‑CTCCCCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAACCCCCGGCCAACAACAAGCTGTCGAATTCGTTCCCGGCCC > SRR4302540.2325890/1‑94 (MQ=60)
GCTACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAAAAACAAGCTGACGAATTCGTTACCGGCCCCT > SRR4302540.7093113/1‑94 (MQ=60)
CTACAA‑‑‑TCC‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCT < SRR4302540.4014898/94‑1 (MQ=60)
ACAA‑‑‑TC‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAAAACACCCATGCGGCTAAACCCCGGCCAACAAAAAGCTGTCGAAATCTTTACCCGCCCCCGCC > SRR4302540.2135803/1‑94 (MQ=46)
T‑‑‑C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTG < SRR4302540.4011852/94‑1 (MQ=60)
C‑CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGCGC > SRR4302540.6552152/1‑94 (MQ=60)
CT‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302540.4751153/94‑1 (MQ=60)
CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT > SRR4302540.9375052/1‑94 (MQ=60)
CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302540.9663959/94‑1 (MQ=60)
CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302540.5322877/94‑1 (MQ=60)
CC‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCT < SRR4302540.4978292/94‑1 (MQ=60)
C‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACCCCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCTG < SRR4302540.2225361/94‑1 (MQ=60)
C‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCTG > SRR4302540.9782654/1‑94 (MQ=60)
C‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCTG < SRR4302540.948380/94‑1 (MQ=60)
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GATTTCGGTCTTCTCTCTCTGATTTAAACATCCGCAGCCAACCGGTTAGCGGCTTACACGCGGTCACATTCAAATGCGATTCTGCTACAA‑‑‑T‑‑‑C‑CT‑‑CCCCCC‑‑GTTCGAAGATTGAGCAATACACCTATGCGTCTAAACCCCGGCCAACAACAAGCTGTCGAATTCGTTACCGGCCCCTGCCTGGTGCTG > NC_000913/3958168‑3958354
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
