Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,374,589 |
A→G |
L156P (CTG→CCG) |
sspA ← |
stringent starvation protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,374,589 | 0 | A | G | 99.6%
| 737.6
/ NA
| 231 | L156P (CTG→CCG) | sspA | stringent starvation protein A |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (105/125); minor base C (1/0); total (106/125) |
| Fisher's exact test for biased strand distribution p-value = 4.59e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 237 total aligned reads displayed.
TAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCA > NC_000913/3374499‑3374678
|
taGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCggg > 2:3469621/1‑93 (MQ=255)
cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGa > 1:1920041/1‑93 (MQ=255)
cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGa > 1:317108/1‑93 (MQ=255)
cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGa > 2:1279518/1‑93 (MQ=255)
cTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGa < 1:2375771/93‑1 (MQ=255)
tttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGaa > 1:2715535/1‑93 (MQ=255)
tttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGaa > 2:5654217/1‑93 (MQ=255)
tttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGaa < 1:3486657/93‑1 (MQ=255)
ttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAAc < 2:3420348/93‑1 (MQ=255)
ttCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAAc < 2:5539216/93‑1 (MQ=255)
tCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACt > 1:4985904/1‑93 (MQ=255)
cAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTc < 2:2896775/93‑1 (MQ=255)
cAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTc < 1:4547694/93‑1 (MQ=255)
cAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTc > 2:3375485/1‑93 (MQ=255)
aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCa > 2:1817495/1‑93 (MQ=255)
aGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCa > 1:5200801/1‑93 (MQ=255)
gCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAt < 2:3839420/93‑1 (MQ=255)
gCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAt > 2:3828296/1‑93 (MQ=255)
gCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAt > 2:420701/1‑93 (MQ=255)
gCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAt < 2:1065277/93‑1 (MQ=255)
gCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAt > 2:3035902/1‑93 (MQ=255)
tctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCg > 1:2425145/1‑93 (MQ=255)
ctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGc < 1:1135466/93‑1 (MQ=255)
ctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGc < 1:779451/93‑1 (MQ=255)
ctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGc > 1:2204970/1‑93 (MQ=255)
ctTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGc > 1:3850656/1‑93 (MQ=255)
tttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCCTCGCt > 2:5875674/1‑93 (MQ=255)
tttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCt > 2:322080/1‑93 (MQ=255)
ttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTc < 1:846222/93‑1 (MQ=255)
ttCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTc > 2:4669187/1‑93 (MQ=255)
tCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCa < 2:493632/93‑1 (MQ=255)
tCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCa < 1:6128316/93‑1 (MQ=255)
gCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACATCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAgg > 2:5122118/1‑93 (MQ=255)
gCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAgg > 2:3009504/1‑93 (MQ=255)
ccACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAgg < 2:2663071/92‑1 (MQ=255)
cACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGa < 1:5364220/93‑1 (MQ=255)
cACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGa < 1:1778210/93‑1 (MQ=255)
ccccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGaa < 2:2204292/92‑1 (MQ=255)
aCCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGaa > 2:1454769/1‑93 (MQ=255)
cccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAg > 1:597648/1‑93 (MQ=255)
cccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAg > 1:2028687/1‑93 (MQ=255)
ccGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCGGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGt > 2:680543/1‑93 (MQ=255)
cGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTa > 2:3765365/1‑93 (MQ=255)
gggCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTAc > 1:278875/1‑93 (MQ=255)
gggCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTAc < 1:452890/93‑1 (MQ=255)
ccGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGc < 2:151276/93‑1 (MQ=255)
ccGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGc < 1:2336073/93‑1 (MQ=255)
cGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCt < 2:4442097/93‑1 (MQ=255)
gCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCtt > 2:1038154/1‑93 (MQ=255)
gCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCtt > 1:5295387/1‑93 (MQ=255)
cTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTc > 1:3942147/1‑93 (MQ=255)
cTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTc < 2:5815695/93‑1 (MQ=255)
tGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCt > 1:5464256/1‑93 (MQ=255)
tGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCt < 2:769277/93‑1 (MQ=255)
taaCTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTg < 1:2926454/92‑1 (MQ=255)
gAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTg > 1:2099943/1‑93 (MQ=255)
gAACTCGATGCCCAGTCGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAAGCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTg < 2:4569475/93‑1 (MQ=255)
cTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAcc < 1:4145436/93‑1 (MQ=255)
tCGATGCGCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCg < 2:3362373/93‑1 (MQ=255)
tCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCg > 2:3869370/1‑93 (MQ=255)
cGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGa < 2:4051058/93‑1 (MQ=255)
gATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGaa < 2:1627566/93‑1 (MQ=255)
gATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGaa > 1:3825457/1‑93 (MQ=255)
aTGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAg > 2:1346651/1‑93 (MQ=255)
aTGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAg > 1:2980869/1‑93 (MQ=255)
gCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAc < 2:5094822/93‑1 (MQ=255)
cccAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAcc < 2:5327517/93‑1 (MQ=255)
cccAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAcc > 1:1313627/1‑93 (MQ=255)
cccAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAcc < 1:5289860/93‑1 (MQ=255)
ccAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCg < 2:3322381/93‑1 (MQ=255)
ccAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCg > 2:2309788/1‑93 (MQ=255)
cAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCgg < 2:5435573/93‑1 (MQ=255)
cAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCgg > 2:1321940/1‑93 (MQ=255)
aGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgc < 1:1609418/93‑1 (MQ=255)
gTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGgcg > 1:6278487/1‑93 (MQ=255)
ggCAGACGCCACAGCAGCGGAGCAAGATAGCAATAGACCGGGCTGAACTCATCGCTCAGGAAGGACGGCTTCTGACCGCAGATCGGCGCacgc > 2:4477515/1‑90 (MQ=255)
gACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCca > 2:319977/1‑93 (MQ=255)
gACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCca < 2:1955715/93‑1 (MQ=255)
cccACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCcagca < 2:3789499/92‑1 (MQ=255)
cagcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGttcttc < 1:4654798/93‑1 (MQ=255)
agcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTcg > 1:3703119/1‑93 (MQ=255)
gcGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTcgc < 2:3553891/93‑1 (MQ=255)
gAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCa < 1:563237/93‑1 (MQ=255)
gCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGt < 1:4106236/93‑1 (MQ=255)
aaGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTg < 2:59996/93‑1 (MQ=255)
aGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGc > 1:2518738/1‑93 (MQ=255)
aGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGc > 2:5231208/1‑93 (MQ=255)
aTAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCtt > 2:616189/1‑93 (MQ=255)
tAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTa > 2:4721810/1‑93 (MQ=255)
gCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACg < 2:1959993/93‑1 (MQ=255)
gCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACg < 1:4791251/93‑1 (MQ=255)
cAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGt < 2:873602/93‑1 (MQ=255)
cAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGt < 1:5746470/93‑1 (MQ=255)
aaTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTg > 1:821087/1‑93 (MQ=255)
aTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGc > 2:4317573/1‑93 (MQ=255)
aTCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGc < 2:860026/93‑1 (MQ=255)
tCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCg < 2:2087349/93‑1 (MQ=255)
gACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGc > 1:6187160/1‑93 (MQ=255)
gACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGc < 2:2503966/93‑1 (MQ=255)
aCCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCa > 1:4166587/1‑93 (MQ=255)
|
TAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCA > NC_000913/3374499‑3374678
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT > NC_000913/3374496‑3374681
|
ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCG > SRR4302533.6309962/1‑94 (MQ=60)
TATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGG < SRR4302533.3911272/94‑1 (MQ=60)
TATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGG < SRR4302533.763087/94‑1 (MQ=60)
CCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGA > SRR4302533.1931763/1‑94 (MQ=60)
CCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGA > SRR4302533.319049/1‑94 (MQ=60)
CTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAA < SRR4302533.2390471/94‑1 (MQ=60)
CTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAA < SRR4302533.686730/94‑1 (MQ=60)
CTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAA > SRR4302533.2732209/1‑94 (MQ=60)
CTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAA > SRR4302533.4920021/1‑94 (MQ=60)
TTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAAC < SRR4302533.3508159/94‑1 (MQ=60)
TTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACT > SRR4302533.5016135/1‑94 (MQ=60)
TTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACT < SRR4302533.6217976/94‑1 (MQ=60)
CAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCC > SRR4302533.1818382/1‑94 (MQ=60)
CAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCA > SRR4302533.5232151/1‑94 (MQ=60)
CAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCA < SRR4302533.4575235/94‑1 (MQ=60)
AGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAT > SRR4302533.5775854/1‑94 (MQ=60)
AGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAT < SRR4302533.2502934/94‑1 (MQ=60)
AGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAT < SRR4302533.2953832/94‑1 (MQ=60)
AGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCAT > SRR4302533.3674168/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG > SRR4302533.2491384/1‑94 (MQ=60)
CTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCG > SRR4302533.2440116/1‑94 (MQ=60)
TCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGC > SRR4302533.2218566/1‑94 (MQ=60)
TCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGC > SRR4302533.3874168/1‑94 (MQ=60)
CTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCT < SRR4302533.784043/94‑1 (MQ=60)
CTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCT < SRR4302533.1142219/94‑1 (MQ=60)
TTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCA < SRR4302533.851174/94‑1 (MQ=60)
TTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCA < SRR4302533.552296/94‑1 (MQ=60)
TCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAG < SRR4302533.6165249/94‑1 (MQ=60)
CACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAA < SRR4302533.5994625/94‑1 (MQ=60)
CACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAA < SRR4302533.1789038/94‑1 (MQ=60)
CACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAA < SRR4302533.5396443/94‑1 (MQ=60)
ACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAG > SRR4302533.601171/1‑94 (MQ=60)
ACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAG > SRR4302533.2041209/1‑94 (MQ=60)
CCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTA > SRR4302533.2420855/1‑94 (MQ=60)
CCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTA < SRR4302533.5384665/94‑1 (MQ=60)
CGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTAC < SRR4302533.5743981/94‑1 (MQ=60)
CGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTAC > SRR4302533.280578/1‑94 (MQ=60)
GGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACG < SRR4302533.4314479/94‑1 (MQ=60)
GGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACG < SRR4302533.455600/94‑1 (MQ=60)
GGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACG < SRR4302533.3816166/94‑1 (MQ=60)
CCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCT < SRR4302533.2350533/94‑1 (MQ=60)
CGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTT > SRR4302533.5327102/1‑94 (MQ=60)
GCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTC > SRR4302533.3966199/1‑94 (MQ=60)
CTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCT < SRR4302533.3866923/94‑1 (MQ=60)
CTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCT > SRR4302533.5497184/1‑94 (MQ=60)
TGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTG > SRR4302533.2112896/1‑94 (MQ=60)
TAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGA < SRR4302533.2944358/94‑1 (MQ=60)
ACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACC < SRR4302533.2654136/94‑1 (MQ=60)
ACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACC < SRR4302533.4771187/94‑1 (MQ=60)
CTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCG > SRR4302533.6263616/1‑94 (MQ=60)
CTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCG < SRR4302533.4170559/94‑1 (MQ=60)
CGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAA > SRR4302533.3848843/1‑94 (MQ=60)
GATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAG > SRR4302533.2999104/1‑94 (MQ=60)
GATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAG > SRR4302533.1409053/1‑94 (MQ=60)
GATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAG < SRR4302533.99320/94‑1 (MQ=60)
ATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGA > SRR4302533.4158559/1‑94 (MQ=60)
ATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGA > SRR4302533.5326028/1‑94 (MQ=60)
TGCCCAGTTGCGGCAGACGCTACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGAC < SRR4302533.4178785/94‑1 (MQ=60)
GCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACC < SRR4302533.445489/94‑1 (MQ=60)
GCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACC > SRR4302533.1321509/1‑94 (MQ=60)
GCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACC > SRR4302533.1966348/1‑94 (MQ=60)
CCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCG > SRR4302533.4720180/1‑94 (MQ=60)
CCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCG < SRR4302533.5321538/94‑1 (MQ=60)
CCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCG < SRR4302533.2870392/94‑1 (MQ=60)
CCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGG > SRR4302533.5122508/1‑94 (MQ=60)
CCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGG < SRR4302533.1760076/94‑1 (MQ=60)
cccTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGC < SRR4302533.1248345/91‑1 (MQ=60)
CAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGC > SRR4302533.3761182/1‑94 (MQ=60)
AGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCG > SRR4302533.6315972/1‑94 (MQ=60)
AGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCG > SRR4302533.786812/1‑94 (MQ=60)
AGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCG < SRR4302533.1619178/94‑1 (MQ=60)
AGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCG > SRR4302533.5239106/1‑94 (MQ=60)
GTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGC > SRR4302533.390956/1‑94 (MQ=60)
AGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCA < SRR4302533.3989291/94‑1 (MQ=60)
CGCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCA > SRR4302533.5210346/1‑94 (MQ=60)
GCCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAG < SRR4302533.4575397/94‑1 (MQ=60)
CCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGT > SRR4302533.2111263/1‑94 (MQ=60)
CCACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGT < SRR4302533.3153571/94‑1 (MQ=60)
ACAGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTC < SRR4302533.4574654/94‑1 (MQ=60)
AGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTT < SRR4302533.2353961/94‑1 (MQ=60)
AGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTT > SRR4302533.2189185/1‑94 (MQ=60)
AGCAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTT < SRR4302533.65697/94‑1 (MQ=60)
CAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCG < SRR4302533.6155596/94‑1 (MQ=60)
CAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCG > SRR4302533.3725863/1‑94 (MQ=60)
CAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCG < SRR4302533.1644917/94‑1 (MQ=60)
CAGCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCG < SRR4302533.4683004/94‑1 (MQ=60)
GCGGAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCG < SRR4302533.2339954/94‑1 (MQ=60)
GAGCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAG < SRR4302533.566575/94‑1 (MQ=60)
GCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTT < SRR4302533.4131208/94‑1 (MQ=60)
GCAAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTT < SRR4302533.4000618/94‑1 (MQ=60)
AAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGC > SRR4302533.2801720/1‑94 (MQ=60)
AAGATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGC > SRR4302533.2534256/1‑94 (MQ=60)
GATAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTT < SRR4302533.8448/94‑1 (MQ=60)
TAGCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTAC < SRR4302533.5491925/94‑1 (MQ=60)
GCAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGT < SRR4302533.4820283/94‑1 (MQ=60)
CAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTG > SRR4302533.2045139/1‑94 (MQ=60)
CAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTG < SRR4302533.2840761/94‑1 (MQ=60)
CAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTG > SRR4302533.825903/1‑94 (MQ=60)
CAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTG < SRR4302533.2361397/94‑1 (MQ=60)
CAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTG < SRR4302533.5781143/94‑1 (MQ=60)
CAATCGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTG < SRR4302533.5360248/94‑1 (MQ=60)
CGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGC > SRR4302533.6224297/1‑94 (MQ=60)
CGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGC > SRR4302533.6128438/1‑94 (MQ=60)
CGACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGC < SRR4302533.3207703/94‑1 (MQ=60)
GACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCA > SRR4302533.3253333/1‑94 (MQ=60)
GACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCA > SRR4302533.4191836/1‑94 (MQ=60)
ACCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGAGCGAAGACAGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGGTTACGTacggact > SRR4302533.3355970/1‑87 (MQ=60)
CCGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATC < SRR4302533.1572610/94‑1 (MQ=60)
CGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT < SRR4302533.1877168/94‑1 (MQ=60)
CGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT > SRR4302533.4979923/1‑94 (MQ=60)
CGGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT < SRR4302533.4823842/94‑1 (MQ=60)
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ATATAGCCTTTCAGCTCTTTCGCACCCGGGCCGCTGAACTCGATGCCCAGTTGCGGCAGACGCCACAGCAGCGGAGCAAGATAGCAATCGACCAGGCTGAACTCATCGCTCAGGAAGTACGGCTTCTGACCGAAGACCGGCGCAATCGCCAGCAGTTCTTCGCGCAGTTGCTTACGTGCGGCATCT > NC_000913/3374496‑3374681
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
