Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,554,118 |
+C |
coding (367/396 nt) |
yhgKJ ← |
RNA phosphage cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,554,117 | 1 | . | C | 98.9%
| 578.8
/ ‑1.5
| 183 | coding (368/396 nt) | yhgKJ | RNA phosphage cyclase |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (86/95); total (87/96) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
Only 100 of 202 total aligned reads displayed.
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554026‑3554199
|
tGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑c < 1:613963/93‑1 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATGCGCAGGCGGCGCCGACGGGCTATTGGt‑gccg‑cc > 2:3307378/1‑92 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑cc > 1:4960523/1‑92 (MQ=255)
ggTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGt‑gccg‑cc > 2:632840/1‑92 (MQ=255)
ggttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccg > 2:5621840/3‑91 (MQ=255)
gTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccg < 1:2575209/93‑3 (MQ=255)
tttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgc > 2:6240746/1‑90 (MQ=255)
tttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgc < 2:1954415/93‑4 (MQ=255)
ttGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGt‑gccg‑ccgct > 2:5651660/1‑89 (MQ=255)
gCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCa < 1:4799926/93‑1 (MQ=255)
gCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCa > 1:5543907/1‑93 (MQ=255)
cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAc > 2:1447615/1‑93 (MQ=255)
cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAc > 2:4184812/1‑93 (MQ=255)
cTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCAc > 1:5400190/1‑93 (MQ=255)
tgatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACt > 2:726003/1‑93 (MQ=255)
gatgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACtt > 2:4695166/1‑93 (MQ=255)
tgaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCa < 1:3279217/93‑1 (MQ=255)
gaATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCCGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGGTCACTTCaa > 2:2982393/1‑93 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca < 2:2300845/93‑1 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca < 1:5249490/93‑1 (MQ=255)
aTTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAaca < 1:3644538/93‑1 (MQ=255)
ttCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAacac < 2:3133562/93‑1 (MQ=255)
tCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcg < 1:277865/93‑1 (MQ=255)
ccTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACAcgc < 2:1979196/93‑1 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCGGCACCCGGCGGATAAAATTCGCAGGCGGCCCCGAAGGGTTCTCGGT‑GCCGCCGCTCACTTGAGCAcgcta > 2:4591810/1‑91 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGa < 2:824237/93‑1 (MQ=255)
tATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGT‑GCCGCCGCTCACTTCAACACGCGa > 1:1664821/1‑93 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGTCCCGC‑CGCTCACTTCAACACGCGaa < 1:2080074/93‑1 (MQ=255)
aTTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGaa > 1:3181781/1‑93 (MQ=255)
ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAg > 2:1156369/1‑93 (MQ=255)
ttttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAg < 2:4376257/93‑1 (MQ=255)
ttCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGt > 1:1304303/1‑93 (MQ=255)
tCGCAAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTc > 2:5763004/1‑93 (MQ=255)
cGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTcc > 2:255478/1‑93 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAt < 1:1875083/93‑1 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAt < 1:5730701/93‑1 (MQ=255)
ccAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAt > 1:5765175/1‑93 (MQ=255)
ctgcagcGGCTCCAGCACCCGGCGGATAAAATACGCAGGCGGCGCCGACCGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAATGTCCATc > 2:3773936/3‑93 (MQ=255)
cagcagCGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATc > 2:3570187/1‑93 (MQ=255)
agcagcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGG‑CGCCGCCGCTCACTTCAACACGCGAACGACCATCg > 1:5650423/1‑93 (MQ=255)
agcGGCTCCAGCACCCGGCGGATAAAATCCGCAGGAGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCa > 1:2414542/1‑93 (MQ=255)
ggCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAc < 2:2784231/93‑1 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc > 1:6052169/1‑93 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc > 1:3430148/1‑93 (MQ=255)
gCTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAcc < 2:20930/93‑1 (MQ=255)
cTCCAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGAGAAGGTCCCTCCGCAAACca > 2:5438660/1‑93 (MQ=255)
ccAGCACCCGGCGGATATAACCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACcaca < 2:5554501/93‑1 (MQ=255)
cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 2:3356070/93‑1 (MQ=255)
cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 2:5891824/93‑1 (MQ=255)
cAGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAg < 1:2444869/93‑1 (MQ=255)
aGCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAACGGCAAACCACAgc < 2:5208659/93‑1 (MQ=255)
gCACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcg > 2:2442170/1‑93 (MQ=255)
cACCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAgcgc < 1:5067627/93‑1 (MQ=255)
aCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg > 1:2361986/1‑93 (MQ=255)
aCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAAACACAGcgcg > 2:1096342/1‑93 (MQ=255)
aCCCGGCGGATAAAATCCGCAGGCGGCGCCGACGGGGTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGcgcg > 1:4379970/1‑93 (MQ=255)
cccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCgg < 1:4398519/93‑1 (MQ=255)
ccGGCGGATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCggg > 2:6270485/1‑93 (MQ=255)
cggcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc < 2:1029822/93‑1 (MQ=255)
cggcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgc > 1:775224/1‑93 (MQ=255)
ggcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgca > 2:2539358/1‑93 (MQ=255)
ggcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgca < 2:2862904/93‑1 (MQ=255)
gcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcag > 2:4626569/1‑93 (MQ=255)
gcggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcag < 1:722358/93‑1 (MQ=255)
ggATAGAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagcc > 2:5794477/1‑92 (MQ=255)
ggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGgcagca > 1:2973002/1‑93 (MQ=255)
ggATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGCCCATCCGCAAACCACAGCGCGGgcagca > 2:5152509/1‑93 (MQ=255)
gATAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAc > 1:4121911/1‑93 (MQ=255)
tAAAATCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCg > 1:3788362/1‑93 (MQ=255)
aaaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGt > 1:1418499/1‑93 (MQ=255)
aaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt < 1:3889667/93‑1 (MQ=255)
aaaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGtt < 2:4444440/93‑1 (MQ=255)
aaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGttt < 2:3898301/93‑1 (MQ=255)
aaTCCGCAGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGttt > 1:3014661/1‑93 (MQ=255)
ccgcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCAGAGCGCGGGCAGCACCGTTTgca < 2:5935484/89‑1 (MQ=255)
cgcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcag > 1:6291224/4‑93 (MQ=255)
cgcaGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcag < 2:1638306/90‑1 (MQ=255)
caGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTgcagca < 2:3698594/92‑1 (MQ=255)
aGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAc > 2:60530/1‑93 (MQ=255)
aGGCGGCGCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCAc < 1:4841760/93‑1 (MQ=255)
gcggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa < 1:4755315/93‑1 (MQ=255)
gcggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCa < 1:1022721/93‑1 (MQ=255)
cggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAg < 2:3427214/93‑1 (MQ=255)
ggcgCCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGc > 1:1799796/1‑93 (MQ=255)
gcgcCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCg > 2:1369119/1‑93 (MQ=255)
gcCGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTa < 2:1800953/93‑1 (MQ=255)
ccGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAc < 1:3867177/93‑1 (MQ=255)
ccGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAc < 1:1449192/93‑1 (MQ=255)
cGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACa > 2:2267709/1‑93 (MQ=255)
cGACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACa > 2:5363785/1‑93 (MQ=255)
gACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa > 2:5397127/1‑93 (MQ=255)
gACGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACaa > 2:5831220/1‑93 (MQ=255)
aCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAc > 2:895431/1‑93 (MQ=255)
aCGGGTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAc > 1:1592332/1‑93 (MQ=255)
ggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTc < 1:2221865/93‑1 (MQ=255)
ggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTc > 1:2025470/1‑93 (MQ=255)
ggTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTc < 1:1233015/93‑1 (MQ=255)
gTTATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTcc < 2:1595500/93‑1 (MQ=255)
tATCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCgg < 2:4276957/93‑1 (MQ=255)
aTCGGT‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCATCACCGTTTGCAGCACGAGCGTACAACTTCCGgc > 1:3136971/1‑93 (MQ=255)
|
TGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCG‑AGGCGGCGCCGACGGGTTATCGGTCGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > NC_000913/3554026‑3554199
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC > NC_000913/3554028‑3554211
|
GTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGTGCCGCCG‑C < SRR4302533.2591051/94‑1 (MQ=60)
TGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCA > SRR4302533.5577390/1‑94 (MQ=60)
GCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCAC < SRR4302533.4829000/94‑1 (MQ=60)
GCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCAC > SRR4302533.5432640/1‑94 (MQ=60)
GCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCAC < SRR4302533.5876649/94‑1 (MQ=60)
GCTAATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCGCCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCAC < SRR4302533.1634242/94‑1 (MQ=60)
CTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACT > SRR4302533.5767359/1‑94 (MQ=60)
GATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTC < SRR4302533.1913555/94‑1 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCA < SRR4302533.3163471/94‑1 (MQ=60)
ATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCA > SRR4302533.568150/1‑94 (MQ=60)
TGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAA < SRR4302533.3299462/94‑1 (MQ=60)
GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCTCTCACTTCAAC > SRR4302533.3390152/1‑94 (MQ=60)
GAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAAC < SRR4302533.3636884/94‑1 (MQ=60)
AATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGCGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACA > SRR4302533.2451126/1‑94 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACAC < SRR4302533.5281041/94‑1 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACAC < SRR4302533.3666947/94‑1 (MQ=60)
ATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACAC < SRR4302533.3792703/94‑1 (MQ=60)
TCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGC < SRR4302533.279560/94‑1 (MQ=60)
TCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGC < SRR4302533.208522/94‑1 (MQ=60)
TCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGATATCGG‑‑‑CGCCGCCGCTCACTTCAACAAGC > SRR4302533.2163406/1‑94 (MQ=60)
CCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCG < SRR4302533.3012473/94‑1 (MQ=60)
CTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGA > SRR4302533.1674881/1‑94 (MQ=60)
TATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAA > SRR4302533.3201354/1‑94 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑CCCGC‑CGCTCACTTCAACACGCGAAG < SRR4302533.2092871/94‑1 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAG < SRR4302533.5490492/94‑1 (MQ=60)
ATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAG > SRR4302533.2382491/1‑94 (MQ=60)
TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGT < SRR4302533.1443521/94‑1 (MQ=60)
TTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGT > SRR4302533.1312141/1‑94 (MQ=60)
TCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCC > SRR4302533.1290284/1‑94 (MQ=60)
TCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCC < SRR4302533.4812585/94‑1 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCCGG‑AGGCGGTGCCGACGGGTTCTACGT‑‑‑GCCGACGCTCACTTCGACACGCGAAGGGCCAT > SRR4302533.4034451/1‑94 (MQ=40)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT > SRR4302533.5799966/1‑94 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT > SRR4302533.2931916/1‑94 (MQ=60)
GCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCAT < SRR4302533.943795/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302533.5765302/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302533.1886507/94‑1 (MQ=60)
CCAGCAGCGGCTCCAGCACCCGGCGGATAAAACCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATC < SRR4302533.738569/94‑1 (MQ=60)
CAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGG‑‑‑CGCCGCCGCTCACTTCAACACGCGAACGACCATCG > SRR4302533.5684579/1‑94 (MQ=60)
AGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGG < SRR4302533.1343169/94‑1 (MQ=60)
GCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGC < SRR4302533.230902/94‑1 (MQ=60)
CAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCA > SRR4302533.5221653/1‑94 (MQ=60)
CAGCGGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGAGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCA > SRR4302533.2429455/1‑94 (MQ=60)
GGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACC > SRR4302533.6088826/1‑94 (MQ=60)
GGCTCCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACC > SRR4302533.3451338/1‑94 (MQ=60)
CCAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAG < SRR4302533.6090496/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302533.4568000/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302533.5347993/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302533.106215/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302533.2459961/94‑1 (MQ=60)
CAGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGC < SRR4302533.25862/94‑1 (MQ=60)
AGCACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCG < SRR4302533.4316421/94‑1 (MQ=60)
CACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG < SRR4302533.5051023/94‑1 (MQ=60)
CACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG < SRR4302533.5098232/94‑1 (MQ=60)
CACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG > SRR4302533.2376603/1‑94 (MQ=60)
CACCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCG > SRR4302533.4406413/1‑94 (MQ=60)
CCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG > SRR4302533.66485/1‑94 (MQ=60)
CCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG > SRR4302533.734145/1‑94 (MQ=60)
CCCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGG < SRR4302533.4425074/94‑1 (MQ=60)
CCGGCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGC > SRR4302533.779779/1‑94 (MQ=60)
GCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGC < SRR4302533.726629/94‑1 (MQ=60)
GCGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGC < SRR4302533.5736907/94‑1 (MQ=60)
CGGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCA > SRR4302533.2991193/1‑94 (MQ=60)
GGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC > SRR4302533.4146936/1‑94 (MQ=60)
GGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC < SRR4302533.4104787/94‑1 (MQ=60)
GGATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCAC < SRR4302533.1652937/94‑1 (MQ=60)
ATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCG > SRR4302533.3811564/1‑94 (MQ=60)
ATAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCG > SRR4302533.3154932/1‑94 (MQ=60)
TAAAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGT > SRR4302533.1427080/1‑94 (MQ=60)
AAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT > SRR4302533.3033098/1‑94 (MQ=60)
AAATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTT < SRR4302533.3913400/94‑1 (MQ=60)
AATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG < SRR4302533.1797598/94‑1 (MQ=60)
aacccgcAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTG < SRR4302533.2382061/87‑1 (MQ=60)
ATCC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGC < SRR4302533.5919847/94‑1 (MQ=60)
CC‑GCAGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAG > SRR4302533.6328739/1‑94 (MQ=60)
gcAGGCGGCGCCGACGGGGTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCA > SRR4302533.872922/3‑94 (MQ=60)
AGGCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACC < SRR4302533.4871104/94‑1 (MQ=60)
GCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAG < SRR4302533.1028733/94‑1 (MQ=60)
GCGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAG < SRR4302533.4784172/94‑1 (MQ=60)
CGGCGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGC > SRR4302533.1810745/1‑94 (MQ=60)
CGCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTA < SRR4302533.3290102/94‑1 (MQ=60)
GCCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTAC > SRR4302533.2208675/1‑94 (MQ=60)
CCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACA < SRR4302533.3890780/94‑1 (MQ=60)
CCGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACA < SRR4302533.1457936/94‑1 (MQ=60)
CGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAA > SRR4302533.1533557/1‑94 (MQ=60)
CGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAA > SRR4302533.3894282/1‑94 (MQ=60)
CGACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTACATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAA > SRR4302533.6220940/1‑94 (MQ=60)
GACGGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAAC > SRR4302533.1601962/1‑94 (MQ=60)
GGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTC > SRR4302533.3873443/1‑94 (MQ=60)
GGGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTC > SRR4302533.2037974/1‑94 (MQ=60)
GGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCC < SRR4302533.4844368/94‑1 (MQ=60)
GGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCC < SRR4302533.1240393/94‑1 (MQ=60)
GGTTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCC < SRR4302533.2235589/94‑1 (MQ=60)
TTATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGG > SRR4302533.4421137/1‑94 (MQ=60)
TATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCATCACCGTTTGCAGCACGAGCGTACAACTTCCGGC > SRR4302533.3156258/1‑94 (MQ=60)
TATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGC > SRR4302533.4892397/1‑94 (MQ=60)
ATCGGT‑‑‑GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCG < SRR4302533.260910/94‑1 (MQ=60)
tcggtgccgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGC > SRR4302533.3049895/11‑94 (MQ=60)
ggtgccgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTA > SRR4302533.4530899/9‑94 (MQ=60)
ggtgccgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTA > SRR4302533.576562/9‑94 (MQ=60)
GCCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCG < SRR4302533.4794610/94‑1 (MQ=60)
CCGCCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGA < SRR4302533.3774088/94‑1 (MQ=60)
cgcCGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGAT < SRR4302533.2480141/91‑1 (MQ=60)
CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC > SRR4302533.5969412/1‑94 (MQ=60)
CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC > SRR4302533.4612828/1‑94 (MQ=60)
CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC < SRR4302533.2051925/94‑1 (MQ=60)
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GTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATCC‑G‑AGGCGGCGCCGACGGGTTATCGGT‑‑CGCCG‑CGCTCACTTCAACACGCGAAGGTCCATCGGCAAACCACAGCGCGGGCAGCACCGTTTGCAGCACCAGCGTACAACTTCCGGCGCTACCGATAGC > NC_000913/3554028‑3554211
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
