Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,601,339 G→A P179L (CCG→CTG)  ftsY ← cell division membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,601,3390GA100.0% 787.4 / NA 215P179L (CCG→CTG) ftsYcell division membrane protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (121/94);  total (121/94)

Only 100 of 227 total aligned reads displayed.

TTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATT  >  NC_000913/3601249‑3601428
                                                                                          |                                                                                         
ttttCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAgc                                                                                         <  2:3089111/93‑1 (MQ=255)
ttttCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAgc                                                                                         >  1:1905152/1‑93 (MQ=255)
 tttCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAgct                                                                                        >  1:3588386/1‑93 (MQ=255)
  ttCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAgctg                                                                                       >  1:3962756/1‑93 (MQ=255)
     tttGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGctc                                                                                    >  2:4450508/1‑93 (MQ=255)
      ttGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGctct                                                                                   <  2:5153094/93‑1 (MQ=255)
        ggTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCtcttc                                                                                 <  2:733030/93‑1 (MQ=255)
        ggTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCtcttc                                                                                 <  2:3371772/93‑1 (MQ=255)
        ggTTTTTAACAGGCTGCGTTTCAGGCGCACGAAAAATCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCtcttc                                                                                 <  1:2115207/93‑1 (MQ=255)
         gTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCtcttct                                                                                >  2:2161656/1‑93 (MQ=255)
          tttttAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCtcttctt                                                                               >  2:4548243/1‑93 (MQ=255)
           ttttAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCtcttcttc                                                                              <  2:88763/93‑1 (MQ=255)
           ttttAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCtcttcttc                                                                              <  1:2634893/93‑1 (MQ=255)
           ttttAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATCTCTTCCACCAGCTGCtcttcttc                                                                              <  1:3019647/93‑1 (MQ=255)
            tttAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCtcttcttct                                                                             <  2:1169516/93‑1 (MQ=255)
            tttAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCtcttcttct                                                                             <  1:5776867/93‑1 (MQ=255)
               aaCAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGcc                                                                          >  2:675964/1‑93 (MQ=255)
                aCAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGGTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCg                                                                         >  2:4301463/1‑93 (MQ=255)
                 cAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCgg                                                                        >  2:183844/1‑93 (MQ=255)
                  aGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCgga                                                                       >  2:3813192/1‑93 (MQ=255)
                    gCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCggagg                                                                     <  2:5746354/93‑1 (MQ=255)
                    gCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCggagg                                                                     >  2:3224114/1‑93 (MQ=255)
                      tGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGaa                                                                   <  1:6197963/93‑1 (MQ=255)
                      tGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGaa                                                                   >  2:1611334/1‑93 (MQ=255)
                      tGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGaa                                                                   >  1:5449677/1‑93 (MQ=255)
                      tGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGaa                                                                   >  1:839207/1‑93 (MQ=255)
                       gCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGGac                                                                  >  2:5337630/1‑93 (MQ=255)
                       gCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAac                                                                  >  1:2156101/1‑93 (MQ=255)
                          tttCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAaccac                                                               <  2:2503231/93‑1 (MQ=255)
                            tCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAAccacca                                                             >  2:2902814/1‑93 (MQ=255)
                              aGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGGTCTTCTTCTGCCGGAGGGACCACCATc                                                           >  2:3565513/1‑93 (MQ=255)
                               ggCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCa                                                          <  1:1959335/93‑1 (MQ=255)
                                gcgcgcGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCAc                                                         >  1:421088/1‑93 (MQ=255)
                                gcgcgcGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCAc                                                         <  1:6209958/93‑1 (MQ=255)
                                 cgcgcgAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCAcc                                                        <  1:1538077/93‑1 (MQ=255)
                                  gcgcgAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTACCGGAGGAACCACCATCACCg                                                       >  1:6082744/1‑93 (MQ=255)
                                    gcgAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGcc                                                     <  1:4076636/93‑1 (MQ=255)
                                    gcgAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGcc                                                     >  2:4389430/1‑93 (MQ=255)
                                     cgAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCct                                                    >  1:1834138/1‑93 (MQ=255)
                                      gAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCctc                                                   >  1:4549191/1‑93 (MQ=255)
                                      gAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCctc                                                   <  2:4004129/93‑1 (MQ=255)
                                      gAAAAAACCTTCTTTGGTCGGTTCTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCctc                                                   <  2:1969885/93‑1 (MQ=255)
                                        aaaaaCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCtctt                                                 >  1:3866074/1‑93 (MQ=255)
                                         aaaaCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCtcttc                                                >  2:4914410/1‑93 (MQ=255)
                                         aaaaCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCtcttc                                                >  2:1121217/1‑93 (MQ=255)
                                         aaaaCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCtcttc                                                <  2:1467500/93‑1 (MQ=255)
                                         aaaaCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCtcttc                                                <  2:1955968/93‑1 (MQ=255)
                                          aaaCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCtcttct                                               >  2:1374557/1‑93 (MQ=255)
                                           aaCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGCTTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAGCCACCATCCCCGCCTCTTCTg                                              >  2:2289348/1‑93 (MQ=255)
                                            aCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGc                                             >  1:146757/1‑93 (MQ=255)
                                             ccTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGcc                                            >  2:5063171/1‑93 (MQ=255)
                                              cttcttTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCg                                           >  1:5020085/1‑93 (MQ=255)
                                               ttcttTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGc                                          >  2:1356824/1‑93 (MQ=255)
                                               ttcttTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGc                                          >  2:5896474/1‑93 (MQ=255)
                                                tcttTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCt                                         >  2:3723368/1‑93 (MQ=255)
                                                  tttGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTc                                       >  2:5492479/1‑93 (MQ=255)
                                                   ttGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCg                                      <  2:3959404/93‑1 (MQ=255)
                                                    tGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCgg                                     <  2:3671655/93‑1 (MQ=255)
                                                    tGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCgg                                     <  2:1243329/93‑1 (MQ=255)
                                                      gTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGca                                   <  1:1284636/93‑1 (MQ=255)
                                                      gTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGca                                   <  1:1718534/93‑1 (MQ=255)
                                                         ggTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGcagcc                                <  2:1730857/93‑1 (MQ=255)
                                                          gTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGcagcca                               >  2:5038547/1‑93 (MQ=255)
                                                          gTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGcagcca                               >  1:4522842/1‑93 (MQ=255)
                                                           tttttCCTGCTCCTGAGCGATTTCTTCCAACAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGcagccag                              <  2:6189471/93‑1 (MQ=255)
                                                            ttttCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGcagccagc                             >  2:6016122/1‑93 (MQ=255)
                                                              ttCCTGCTCCTGACCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAgcgc                           <  2:4079037/93‑1 (MQ=255)
                                                                 cTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGt                        >  1:5477368/1‑93 (MQ=255)
                                                                 cTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGt                        <  2:527729/93‑1 (MQ=255)
                                                                  tGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGtt                       <  1:5591877/93‑1 (MQ=255)
                                                                  tGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGtt                       <  2:3855767/93‑1 (MQ=255)
                                                                  tGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGtt                       >  2:5838106/1‑93 (MQ=255)
                                                                   gCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGttt                      >  1:2003414/1‑93 (MQ=255)
                                                                    cTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTc                     <  1:3150639/93‑1 (MQ=255)
                                                                      ccTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCa                   <  2:5707141/93‑1 (MQ=255)
                                                                      ccTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCa                   >  1:27857/1‑93 (MQ=255)
                                                                        tGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGc                 <  1:3124311/93‑1 (MQ=255)
                                                                        tGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGc                 >  2:1688918/1‑93 (MQ=255)
                                                                        tGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGc                 >  1:2961006/1‑93 (MQ=255)
                                                                         gAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGct                >  1:1533527/1‑93 (MQ=255)
                                                                          aGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCCCCATCACCGCCTCTTCTGCCGCTTCGGCAACCAGCGCCGTGTCCAGctc               <  2:6162314/93‑1 (MQ=255)
                                                                          aGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGctc               <  1:4963786/93‑1 (MQ=255)
                                                                           gCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGctct              <  2:1932071/93‑1 (MQ=255)
                                                                             gagttcttcCACCAGCTGCTCTTCTTCTGCGGAAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtc            <  1:5392247/90‑1 (MQ=255)
                                                                             gATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtc            >  1:1236197/1‑93 (MQ=255)
                                                                             gATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtc            >  1:3595515/1‑93 (MQ=255)
                                                                              aTTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGACCCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcg           <  2:2716427/93‑1 (MQ=255)
                                                                              aTTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcg           >  2:5518057/1‑93 (MQ=255)
                                                                              aTTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcg           >  1:3236620/1‑93 (MQ=255)
                                                                               tttCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcgt          >  1:2465104/1‑93 (MQ=255)
                                                                                 tcttcCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcgtcg        >  1:107278/1‑93 (MQ=255)
                                                                                   ttcCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGt      >  1:943240/1‑93 (MQ=255)
                                                                                   ttcCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGt      >  1:2773264/1‑93 (MQ=255)
                                                                                    tcCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTa     <  1:4670842/93‑1 (MQ=255)
                                                                                     ccaccaGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTaa    <  1:1577642/93‑1 (MQ=255)
                                                                                     ccaccaGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTaa    >  1:5200253/1‑93 (MQ=255)
                                                                                     ccaccaGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTaa    <  1:3670241/93‑1 (MQ=255)
                                                                                      cACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAAt   >  1:2604983/1‑93 (MQ=255)
                                                                                       aCCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAAtt  >  1:2263102/1‑93 (MQ=255)
                                                                                       aCCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAAtt  >  1:2487038/1‑93 (MQ=255)
                                                                                          |                                                                                         
TTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATT  >  NC_000913/3601249‑3601428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATTTCTT  >  NC_000913/3601246‑3601432
                                                                                             |                                                                                             
AGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCA                                                                                               <  SRR4302533.67053/94‑1 (MQ=60)
 GATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAG                                                                                              >  SRR4302533.1949341/1‑94 (MQ=60)
 GATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAG                                                                                              >  SRR4302533.3781488/1‑94 (MQ=60)
  ATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGC                                                                                             >  SRR4302533.5449813/1‑94 (MQ=60)
  ATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGC                                                                                             >  SRR4302533.1254844/1‑94 (MQ=60)
  ATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGC                                                                                             >  SRR4302533.1916775/1‑94 (MQ=60)
  ATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGC                                                                                             >  SRR4302533.1514994/1‑94 (MQ=60)
   TTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCT                                                                                            >  SRR4302533.3610483/1‑94 (MQ=60)
    TTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTG                                                                                           >  SRR4302533.3986898/1‑94 (MQ=60)
      TCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCT                                                                                         <  SRR4302533.4657998/94‑1 (MQ=60)
       CTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTC                                                                                        >  SRR4302533.357852/1‑94 (MQ=60)
        TTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCT                                                                                       <  SRR4302533.2498836/94‑1 (MQ=60)
           GGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCT                                                                                    >  SRR4302533.5500411/1‑94 (MQ=60)
           GGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCT                                                                                    <  SRR4302533.3614023/94‑1 (MQ=60)
           GGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGCCGGTTTTTCCTGTTCCTGAGCGATTTCTTCCACCAGCTGTTCTTCT                                                                                    >  SRR4302533.3989128/1‑94 (MQ=60)
           GGTTTTTAACAGGCTGCGTTTCAGGCGCACGAAAAATCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCT                                                                                    <  SRR4302533.2128252/94‑1 (MQ=60)
            GTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTT                                                                                   >  SRR4302533.6160236/1‑94 (MQ=60)
              TTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCT                                                                                 <  SRR4302533.2651086/94‑1 (MQ=60)
              TTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATCTCTTCCACCAGCTGCTCTTCTTCT                                                                                 <  SRR4302533.3038133/94‑1 (MQ=60)
               TTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTG                                                                                <  SRR4302533.5811756/94‑1 (MQ=60)
               TTTAACAGACTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTG                                                                                <  SRR4302533.2572857/94‑1 (MQ=60)
                 TAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCC                                                                              <  SRR4302533.4179448/94‑1 (MQ=60)
                 TAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCC                                                                              >  SRR4302533.787283/1‑94 (MQ=60)
                  AACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCG                                                                             >  SRR4302533.4569416/1‑94 (MQ=60)
                     AGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAG                                                                          <  SRR4302533.4845319/94‑1 (MQ=60)
                      GGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGG                                                                         >  SRR4302533.2740765/1‑94 (MQ=60)
                      GGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGG                                                                         >  SRR4302533.956225/1‑94 (MQ=60)
                        CTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAA                                                                       >  SRR4302533.844120/1‑94 (MQ=60)
                        CTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAA                                                                       >  SRR4302533.5482504/1‑94 (MQ=60)
                        CTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAA                                                                       <  SRR4302533.2647341/94‑1 (MQ=60)
                        CTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAA                                                                       <  SRR4302533.5649326/94‑1 (MQ=60)
                         TGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAAC                                                                      >  SRR4302533.531067/1‑94 (MQ=60)
                         TGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAAC                                                                      <  SRR4302533.1978635/94‑1 (MQ=60)
                         TGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAAC                                                                      >  SRR4302533.2169375/1‑94 (MQ=60)
                         TGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAAC                                                                      >  SRR4302533.3673856/1‑94 (MQ=60)
                         TGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAAC                                                                      <  SRR4302533.6235145/94‑1 (MQ=60)
                         TGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAAC                                                                      <  SRR4302533.2991599/94‑1 (MQ=60)
                            GTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCAC                                                                   >  SRR4302533.2748316/1‑94 (MQ=60)
                            GTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCAC                                                                   >  SRR4302533.1311510/1‑94 (MQ=60)
                             TTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACC                                                                  <  SRR4302533.1485138/94‑1 (MQ=60)
                                  GGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCAC                                                             >  SRR4302533.423607/1‑94 (MQ=60)
                                  GGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCAC                                                             >  SRR4302533.3062210/1‑94 (MQ=60)
                                  GGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCAC                                                             <  SRR4302533.1971292/94‑1 (MQ=60)
                                   GCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACC                                                            <  SRR4302533.6247202/94‑1 (MQ=60)
                                    CGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCG                                                           >  SRR4302533.2796458/1‑94 (MQ=60)
                                    CGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCG                                                           <  SRR4302533.1547316/94‑1 (MQ=60)
                                    CGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTACCGGAGGAACCACCATCACCG                                                           >  SRR4302533.6119523/1‑94 (MQ=60)
                                       GCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCT                                                        <  SRR4302533.1546993/94‑1 (MQ=60)
                                       GCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCT                                                        <  SRR4302533.4101452/94‑1 (MQ=60)
                                       GCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCT                                                        >  SRR4302533.1845333/1‑94 (MQ=60)
                                        CGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTC                                                       >  SRR4302533.4576776/1‑94 (MQ=60)
                                          AAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTT                                                     >  SRR4302533.3889676/1‑94 (MQ=60)
                                          AAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTT                                                     <  SRR4302533.2292417/94‑1 (MQ=60)
                                          AAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTT                                                     >  SRR4302533.3297873/1‑94 (MQ=60)
                                            AAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCT                                                   <  SRR4302533.1817022/94‑1 (MQ=60)
                                              AACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGC                                                 <  SRR4302533.2978650/94‑1 (MQ=60)
                                              AACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGC                                                 >  SRR4302533.147696/1‑94 (MQ=60)
                                              AACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGC                                                 >  SRR4302533.3155492/1‑94 (MQ=60)
                                               ACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCC                                                >  SRR4302533.3962237/1‑94 (MQ=60)
                                               ACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCC                                                <  SRR4302533.3059685/94‑1 (MQ=60)
                                               ACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCC                                                >  SRR4302533.5609067/1‑94 (MQ=60)
                                                CCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCG                                               >  SRR4302533.5050488/1‑94 (MQ=60)
                                                 CTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGC                                              >  SRR4302533.1090018/1‑94 (MQ=60)
                                                    CTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTC                                           <  SRR4302533.3252913/94‑1 (MQ=60)
                                                     TTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTCCCACCAGCTGCTCTTCTTCTGCCGGAGGAGCCACCATCACCGCCTCTTCTGCCGCTTCG                                          <  SRR4302533.2664548/94‑1 (MQ=60)
                                                        GGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCA                                       >  SRR4302533.5100220/1‑94 (MQ=60)
                                                         GTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAG                                      >  SRR4302533.2055434/1‑94 (MQ=60)
                                                         GTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAG                                      <  SRR4302533.1728954/94‑1 (MQ=60)
                                                         GTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAG                                      <  SRR4302533.1292363/94‑1 (MQ=60)
                                                          TCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGC                                     >  SRR4302533.583307/1‑94 (MQ=60)
                                                            GGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCA                                   <  SRR4302533.455934/94‑1 (MQ=60)
                                                            GGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCA                                   >  SRR4302533.4550222/1‑94 (MQ=60)
                                                                TTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGC                               >  SRR4302533.1913652/1‑94 (MQ=60)
                                                                TTTCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGC                               >  SRR4302533.1720475/1‑94 (MQ=60)
                                                                  TCCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCCGCCAGCGCCG                             >  SRR4302533.4450311/1‑94 (MQ=60)
                                                                   CCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCCCCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGT                            <  SRR4302533.3923530/94‑1 (MQ=60)
                                                                   CCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGT                            >  SRR4302533.5510383/1‑94 (MQ=60)
                                                                   CCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGT                            <  SRR4302533.5210834/94‑1 (MQ=60)
                                                                   CCTGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGT                            >  SRR4302533.2170231/1‑94 (MQ=60)
                                                                     TGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTT                          <  SRR4302533.5625658/94‑1 (MQ=60)
                                                                     TGCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTT                          >  SRR4302533.2015753/1‑94 (MQ=60)
                                                                      GCTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTC                         >  SRR4302533.2318341/1‑94 (MQ=60)
                                                                       CTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCC                        <  SRR4302533.3170011/94‑1 (MQ=60)
                                                                       CTCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCC                        >  SRR4302533.878254/1‑94 (MQ=60)
                                                                        TCCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCA                       >  SRR4302533.28045/1‑94 (MQ=60)
                                                                         CCTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAG                      <  SRR4302533.6242747/94‑1 (MQ=60)
                                                                          CTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGC                     >  SRR4302533.6217800/1‑94 (MQ=60)
                                                                          CTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGC                     >  SRR4302533.2158541/1‑94 (MQ=60)
                                                                          CTGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGC                     >  SRR4302533.2979108/1‑94 (MQ=60)
                                                                           TGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCCCCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCT                    <  SRR4302533.1830846/94‑1 (MQ=60)
                                                                           TGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCT                    <  SRR4302533.3143516/94‑1 (MQ=60)
                                                                           TGAGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCT                    >  SRR4302533.1542737/1‑94 (MQ=60)
                                                                             AGCGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCT                  <  SRR4302533.4993879/94‑1 (MQ=60)
                                                                               CGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTC                >  SRR4302533.3617636/1‑94 (MQ=60)
                                                                               CGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTC                >  SRR4302533.1932816/1‑94 (MQ=60)
                                                                               CGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTC                <  SRR4302533.369935/94‑1 (MQ=60)
                                                                               CGATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTC                >  SRR4302533.1243585/1‑94 (MQ=60)
                                                                                GATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCG               >  SRR4302533.3256566/1‑94 (MQ=60)
                                                                                GATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCG               >  SRR4302533.1571209/1‑94 (MQ=60)
                                                                                GAGTTCTTCCACCAGCTGCTCTTCTTCTGCGGAAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCG               <  SRR4302533.5424644/94‑1 (MQ=60)
                                                                                 ATTTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGT              >  SRR4302533.2480310/1‑94 (MQ=60)
                                                                                   TTCTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCG            >  SRR4302533.107954/1‑94 (MQ=60)
                                                                                     CTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGT          <  SRR4302533.5502641/94‑1 (MQ=60)
                                                                                     CTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGT          >  SRR4302533.948787/1‑94 (MQ=60)
                                                                                     CTTCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGT          >  SRR4302533.2790288/1‑94 (MQ=60)
                                                                                       TCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAA        >  SRR4302533.5231602/1‑94 (MQ=60)
                                                                                       TCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAA        <  SRR4302533.2100354/94‑1 (MQ=60)
                                                                                       TCCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAA        <  SRR4302533.4699146/94‑1 (MQ=60)
                                                                                        CCCCCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAAT       <  SRR4302533.811627/94‑1 (MQ=60)
                                                                                        CCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAAT       <  SRR4302533.3692801/94‑1 (MQ=60)
                                                                                        CCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAAT       >  SRR4302533.2620985/1‑94 (MQ=60)
                                                                                        CCACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAAT       <  SRR4302533.1587142/94‑1 (MQ=60)
                                                                                         CACCAGCTTCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATT      <  SRR4302533.5019111/94‑1 (MQ=60)
                                                                                         CACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATT      >  SRR4302533.2502358/1‑94 (MQ=60)
                                                                                         CACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATT      >  SRR4302533.2277104/1‑94 (MQ=60)
                                                                                          ACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATTT     >  SRR4302533.1293964/1‑94 (MQ=60)
                                                                                          ACCAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATTT     >  SRR4302533.3201909/1‑94 (MQ=60)
                                                                                            CAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATTTCT   >  SRR4302533.2397792/1‑94 (MQ=60)
                                                                                            CAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATTTCT   >  SRR4302533.5914286/1‑94 (MQ=60)
                                                                                            CAGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATTTCT   <  SRR4302533.1898556/94‑1 (MQ=60)
                                                                                             AGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATTTCTT  >  SRR4302533.4410450/1‑94 (MQ=60)
                                                                                             AGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATTTCTT  >  SRR4302533.754289/1‑94 (MQ=60)
                                                                                             |                                                                                             
AGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATTTCTT  >  NC_000913/3601246‑3601432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑