Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,640,786	T→C	Y676C (TAC→TGC)	prlC ←	oligopeptidase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,640,786	0	T	C	100.0%	883.7 / NA	271	Y676C (TAC→TGC)	prlC	oligopeptidase A
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (148/123); total (148/123)

Only 100 of 273 total aligned reads displayed.

AGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGA  >  NC_000913/3640696‑3640875

aGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCaa                                                                                         >  2:5825109/1‑93 (MQ=255)

 gCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAAt                                                                                        <  2:5540069/93‑1 (MQ=255)

 gCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAAt                                                                                        <  2:2500937/93‑1 (MQ=255)

 gCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAAt                                                                                        <  2:2854866/93‑1 (MQ=255)

   gggCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGc                                                                                      >  2:5140001/1‑93 (MQ=255)

   gggCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGc                                                                                      <  2:5580258/93‑1 (MQ=255)

   gggCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGc                                                                                      <  1:3873181/93‑1 (MQ=255)

    ggCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCt                                                                                     <  1:3582512/93‑1 (MQ=255)

     gccgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTc                                                                                    >  1:777818/1‑93 (MQ=255)

     gccgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTc                                                                                    <  1:6142971/93‑1 (MQ=255)

     gccgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTc                                                                                    <  1:2542128/93‑1 (MQ=255)

      ccgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTcc                                                                                   >  1:4149672/1‑93 (MQ=255)

      ccgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTcc                                                                                   <  1:5993783/93‑1 (MQ=255)

       cgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCa                                                                                  <  1:6195290/93‑1 (MQ=255)

        gccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAg                                                                                 >  1:4277033/1‑93 (MQ=255)

        gccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAg                                                                                 >  1:1393719/1‑93 (MQ=255)

          cAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgca                                                                               <  1:5621481/93‑1 (MQ=255)

          cAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgca                                                                               >  2:6319/1‑93 (MQ=255)

           aGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgcat                                                                              <  1:471936/93‑1 (MQ=255)

            gAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgcatc                                                                             >  2:1906137/1‑93 (MQ=255)

            gAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgcatc                                                                             >  2:1600191/1‑93 (MQ=255)

            gAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgcatc                                                                             >  1:2907294/1‑93 (MQ=255)

            gAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgcatc                                                                             <  1:5192108/93‑1 (MQ=255)

              aCAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgcatcgc                                                                           <  1:1463904/93‑1 (MQ=255)

               cAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgcatcgca                                                                          >  1:4053496/1‑93 (MQ=255)

                 gATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgcatcgcatc                                                                        >  2:5412247/1‑93 (MQ=255)

                 gATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAgcatcgcatc                                                                        <  2:3766915/93‑1 (MQ=255)

                     aGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGc                                                                    >  2:1130484/1‑93 (MQ=255)

                      ggCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCt                                                                   >  1:1657131/1‑93 (MQ=255)

                      ggCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCt                                                                   <  2:5993989/93‑1 (MQ=255)

                      ggCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCt                                                                   >  1:4629596/1‑93 (MQ=255)

                      ggCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCt                                                                   <  1:5599430/93‑1 (MQ=255)

                        cACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGc                                                                 <  2:3447366/93‑1 (MQ=255)

                         aCCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCg                                                                >  2:4576874/1‑93 (MQ=255)

                          ccGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCgg                                                               >  2:231160/1‑93 (MQ=255)

                            gTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGtt                                                             >  1:2990546/1‑93 (MQ=255)

                              ctcCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCa                                                           >  2:3982672/1‑93 (MQ=255)

                               tcCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCAc                                                          >  1:2897715/1‑93 (MQ=255)

                               tcCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCAc                                                          >  1:5328766/1‑93 (MQ=255)

                               tcCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCAc                                                          <  1:5642312/93‑1 (MQ=255)

                                   gTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGAcc                                                      <  2:676442/93‑1 (MQ=255)

                                    tGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCa                                                     <  2:2034241/93‑1 (MQ=255)

                                    tGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCa                                                     >  2:176623/1‑93 (MQ=255)

                                     gCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCAc                                                    <  1:2809027/93‑1 (MQ=255)

                                     gCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCAc                                                    >  2:6047548/1‑93 (MQ=255)

                                       cTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACgg                                                  >  1:5526261/1‑93 (MQ=255)

                                       cTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACgg                                                  >  1:6055116/1‑93 (MQ=255)

                                         gTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGTCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa                                                <  2:3265668/93‑1 (MQ=255)

                                         gTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa                                                <  1:3208636/93‑1 (MQ=255)

                                           ttCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGc                                              <  1:5047585/93‑1 (MQ=255)

                                           ttCATCAAGTAAGCAGATTTTCACTGAATGACCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGc                                              <  1:1409813/93‑1 (MQ=255)

                                            tcatcaATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCg                                             <  2:4700919/93‑1 (MQ=255)

                                             catcaATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGt                                            >  1:4341417/1‑93 (MQ=255)

                                                 aaTTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGa                                        >  2:5344880/1‑93 (MQ=255)

                                                  aTTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGaa                                       <  2:6240613/93‑1 (MQ=255)

                                                   ttAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAAc                                      >  2:3805851/1‑93 (MQ=255)

                                                    tAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACa                                     >  2:33117/1‑93 (MQ=255)

                                                      aGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGa                                   >  2:3038558/1‑93 (MQ=255)

                                                        cAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATc                                 <  1:124889/93‑1 (MQ=255)

                                                         aGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCCCGACCACGGAAGCGTTTGAACAGATcc                                >  1:3088323/1‑93 (MQ=255)

                                                         aGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATcc                                >  2:4756332/1‑93 (MQ=255)

                                                          gATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCa                               <  1:4198590/93‑1 (MQ=255)

                                                           aTTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCAt                              <  2:1812921/93‑1 (MQ=255)

                                                            ttttCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATc                             <  1:818540/93‑1 (MQ=255)

                                                            ttttCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATc                             <  2:5198129/93‑1 (MQ=255)

                                                            ttttCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATc                             <  1:2327780/93‑1 (MQ=255)

                                                                 aCTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGctc                        <  1:4563680/93‑1 (MQ=255)

                                                                  cTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGctct                       >  2:4431674/1‑93 (MQ=255)

                                                                    gAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc                     <  2:5690794/93‑1 (MQ=255)

                                                                    gAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc                     >  2:1469124/1‑93 (MQ=255)

                                                                     aaTGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttct                    <  1:4531106/93‑1 (MQ=255)

                                                                     aaTGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttct                    >  2:1513513/1‑93 (MQ=255)

                                                                        gATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGaa                 >  1:5810755/1‑93 (MQ=255)

                                                                        gATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGaa                 <  2:5617642/93‑1 (MQ=255)

                                                                         aTCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCGCGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAAc                <  1:2054172/93‑1 (MQ=255)

                                                                         aTCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAAc                >  2:1363305/1‑93 (MQ=255)

                                                                          tCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAAcc               >  2:3118428/1‑93 (MQ=255)

                                                                          tCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAAcc               >  2:4176991/1‑93 (MQ=255)

                                                                           cAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCg              >  1:3736957/1‑93 (MQ=255)

                                                                            aGCCCTTGATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGc             >  2:6196324/1‑93 (MQ=255)

                                                                            aGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGc             >  1:1840798/1‑93 (MQ=255)

                                                                             gCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGcc            >  1:3042822/1‑93 (MQ=255)

                                                                             gCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGcc            >  1:3480007/1‑93 (MQ=255)

                                                                              cccTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCa           >  2:871216/1‑93 (MQ=255)

                                                                              cccTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCa           <  2:371108/93‑1 (MQ=255)

                                                                              cccTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCa           <  2:2455184/93‑1 (MQ=255)

                                                                              cccTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCa           >  1:3068675/1‑93 (MQ=255)

                                                                               ccTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCAc          >  1:6258280/1‑93 (MQ=255)

                                                                               ccTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCAc          >  1:2379926/1‑93 (MQ=255)

                                                                               ccTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCAc          >  2:820635/1‑93 (MQ=255)

                                                                                cTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACg         >  2:1263300/1‑93 (MQ=255)

                                                                                 ttAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACgg        >  1:1058560/1‑93 (MQ=255)

                                                                                   aaTGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCt      >  2:1061062/1‑93 (MQ=255)

                                                                                   aaTGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCt      >  1:1070494/1‑93 (MQ=255)

                                                                                    aTGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTc     >  2:2703218/1‑93 (MQ=255)

                                                                                    aTGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTc     <  1:972764/93‑1 (MQ=255)

                                                                                    aTGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTc     >  1:686342/1‑93 (MQ=255)

                                                                                     tGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCa    <  1:1922195/93‑1 (MQ=255)

                                                                                       ccGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGa  <  1:3993997/93‑1 (MQ=255)

                                                                                       ccGCAATGCTCCAGCAGCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGa  <  2:4237812/93‑1 (MQ=255)

AGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGA  >  NC_000913/3640696‑3640875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAATGT  >  NC_000913/3640693‑3640879

CCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGC                                                                                               <  SRR4302533.4662232/94‑1 (MQ=60)

 CCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCA                                                                                              <  SRR4302533.2784784/94‑1 (MQ=60)

 CCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCA                                                                                              <  SRR4302533.5104512/94‑1 (MQ=60)

   AGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAAT                                                                                            <  SRR4302533.2589426/94‑1 (MQ=60)

   AGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAAT                                                                                            <  SRR4302533.3150729/94‑1 (MQ=60)

    GCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATG                                                                                           <  SRR4302533.444017/94‑1 (MQ=60)

    GCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATG                                                                                           <  SRR4302533.2567049/94‑1 (MQ=60)

      GGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCT                                                                                         <  SRR4302533.3896821/94‑1 (MQ=60)

       GGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTC                                                                                        >  SRR4302533.782394/1‑94 (MQ=60)

       GGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTC                                                                                        <  SRR4302533.3604576/94‑1 (MQ=60)

        GCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCC                                                                                       <  SRR4302533.6179962/94‑1 (MQ=60)

        GCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCC                                                                                       <  SRR4302533.2557775/94‑1 (MQ=60)

        GCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCC                                                                                       >  SRR4302533.4174813/1‑94 (MQ=60)

        GCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCC                                                                                       <  SRR4302533.6230829/94‑1 (MQ=60)

         CCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCA                                                                                      >  SRR4302533.6195444/1‑94 (MQ=60)

         CCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCA                                                                                      >  SRR4302533.463687/1‑94 (MQ=60)

         CCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCA                                                                                      <  SRR4302533.6030086/94‑1 (MQ=60)

          CGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAG                                                                                     >  SRR4302533.5161192/1‑94 (MQ=60)

          CGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAG                                                                                     >  SRR4302533.4302755/1‑94 (MQ=60)

          CGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAG                                                                                     <  SRR4302533.6232461/94‑1 (MQ=60)

          CGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAG                                                                                     >  SRR4302533.1402118/1‑94 (MQ=60)

          CGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAG                                                                                     <  SRR4302533.4188011/94‑1 (MQ=60)

           GCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGC                                                                                    <  SRR4302533.2393163/94‑1 (MQ=60)

           GCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGACCTTAATGCCGCAATGCTCCAGC                                                                                    <  SRR4302533.176670/94‑1 (MQ=60)

           GCCAGAACAGATAAGGCAACGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGGCCTTAATGCCGCAATGCTCCAGC                                                                                    >  SRR4302533.5474802/1‑94 (MQ=60)

            CCAGAACAGATAAGGCACCGGCTCCGGTGGCTGTTTCATCAATTAAGCAGAGTTTTACTGAATGATCAGCCCGTAATTCCGCAATGCTCCAGCA                                                                                   >  SRR4302533.2022022/1‑94 (MQ=60)

             CAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCAT                                                                                  <  SRR4302533.5655460/94‑1 (MQ=60)

              AGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATC                                                                                 <  SRR4302533.474758/94‑1 (MQ=60)

              AGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATC                                                                                 >  SRR4302533.3095258/1‑94 (MQ=60)

              AGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATC                                                                                 >  SRR4302533.4600641/1‑94 (MQ=60)

              AGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATC                                                                                 >  SRR4302533.2925143/1‑94 (MQ=60)

               GAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCG                                                                                <  SRR4302533.3853013/94‑1 (MQ=60)

               GAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCG                                                                                <  SRR4302533.5223427/94‑1 (MQ=60)

                AACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGC                                                                               >  SRR4302533.5079609/1‑94 (MQ=60)

                AACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGC                                                                               >  SRR4302533.3980143/1‑94 (MQ=60)

                 ACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCA                                                                              >  SRR4302533.6062836/1‑94 (MQ=60)

                 ACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCA                                                                              <  SRR4302533.1472728/94‑1 (MQ=60)

                 ACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCA                                                                              >  SRR4302533.4078180/1‑94 (MQ=60)

                  CAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCAT                                                                             <  SRR4302533.2968203/94‑1 (MQ=60)

                  CAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCAT                                                                             >  SRR4302533.1948671/1‑94 (MQ=60)

                      TAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAG                                                                         <  SRR4302533.3275481/94‑1 (MQ=60)

                       AAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGC                                                                        >  SRR4302533.4582673/1‑94 (MQ=60)

                        AGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCT                                                                       <  SRR4302533.289630/94‑1 (MQ=60)

                        AGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCT                                                                       >  SRR4302533.1667158/1‑94 (MQ=60)

                        AGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCT                                                                       >  SRR4302533.4657657/1‑94 (MQ=60)

                         GGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTG                                                                      <  SRR4302533.1419635/94‑1 (MQ=60)

                         GGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTG                                                                      <  SRR4302533.5633261/94‑1 (MQ=60)

                           CACCGTCTCCGGTGACTGTTTCCTCCATTAAGCAGATTTTCACTGAATGATCAGTCCTTACTGCCGCAATGCTCCAGCATCGCATCCAGCTGCG                                                                    >  SRR4302533.1970859/1‑94 (MQ=60)

                            ACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGG                                                                   <  SRR4302533.6136696/94‑1 (MQ=60)

                             CCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGT                                                                  <  SRR4302533.4382181/94‑1 (MQ=60)

                             CCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGT                                                                  >  SRR4302533.1614904/1‑94 (MQ=60)

                              CGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTT                                                                 >  SRR4302533.3008838/1‑94 (MQ=60)

                              CGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTT                                                                 >  SRR4302533.4010681/1‑94 (MQ=60)

                               GTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTC                                                                <  SRR4302533.819377/94‑1 (MQ=60)

                               GTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTC                                                                >  SRR4302533.1102935/1‑94 (MQ=60)

                               GTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTC                                                                >  SRR4302533.3850488/1‑94 (MQ=60)

                                 CTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCAC                                                              >  SRR4302533.5360701/1‑94 (MQ=60)

                                 CTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCAC                                                              >  SRR4302533.532524/1‑94 (MQ=60)

                                 CTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCAC                                                              >  SRR4302533.297176/1‑94 (MQ=60)

                                 CTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCAC                                                              >  SRR4302533.2915527/1‑94 (MQ=60)

                                  TCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACG                                                             <  SRR4302533.4226039/94‑1 (MQ=60)

                                  TCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACG                                                             <  SRR4302533.5676414/94‑1 (MQ=60)

                                       TGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCAC                                                        >  SRR4302533.3512334/1‑94 (MQ=60)

                                       TGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCAC                                                        <  SRR4302533.951139/94‑1 (MQ=60)

                                        GCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACG                                                       <  SRR4302533.819860/94‑1 (MQ=60)

                                        GCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACG                                                       <  SRR4302533.2826312/94‑1 (MQ=60)

                                         CCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGG                                                      >  SRR4302533.6091783/1‑94 (MQ=60)

                                         CCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGG                                                      >  SRR4302533.5559622/1‑94 (MQ=60)

                                          CTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGA                                                     <  SRR4302533.1153433/94‑1 (MQ=60)

                                          CTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGA                                                     <  SRR4302533.3076873/94‑1 (MQ=60)

                                            GTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAG                                                   >  SRR4302533.5649278/1‑94 (MQ=60)

                                            GTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAG                                                   <  SRR4302533.1445876/94‑1 (MQ=60)

                                            GTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAG                                                   <  SRR4302533.3228398/94‑1 (MQ=60)

                                              TTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCG                                                 <  SRR4302533.5078116/94‑1 (MQ=60)

                                              TTCATCAAGTAAGCAGATTTTCACTGAATGACCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCG                                                 <  SRR4302533.1418336/94‑1 (MQ=60)

                                               TCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGT                                                >  SRR4302533.5560549/1‑94 (MQ=60)

                                               TCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGT                                                >  SRR4302533.4367581/1‑94 (MQ=60)

                                               TCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGT                                                <  SRR4302533.4176736/94‑1 (MQ=60)

                                               TCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGT                                                >  SRR4302533.6088580/1‑94 (MQ=60)

                                               TCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGT                                                >  SRR4302533.1071738/1‑94 (MQ=60)

                                                 ATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTT                                              <  SRR4302533.5631704/94‑1 (MQ=60)

                                                  TCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTG                                             <  SRR4302533.4261409/94‑1 (MQ=60)

                                                   CAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGA                                            >  SRR4302533.2864284/1‑94 (MQ=60)

                                                    AATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAA                                           >  SRR4302533.1929951/1‑94 (MQ=60)

                                                     ATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAAC                                          <  SRR4302533.4303130/94‑1 (MQ=60)

                                                        AAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGA                                       >  SRR4302533.4022258/1‑94 (MQ=60)

                                                        AAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGA                                       >  SRR4302533.3123930/1‑94 (MQ=60)

                                                         AGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGAT                                      <  SRR4302533.1401377/94‑1 (MQ=60)

                                                         AGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCAACGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGAT                                      <  SRR4302533.4093962/94‑1 (MQ=60)

                                                          GCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATC                                     <  SRR4302533.3494071/94‑1 (MQ=60)

                                                          GCAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATC                                     <  SRR4302533.5667702/94‑1 (MQ=60)

                                                           CAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCCCGACCACGGAAGCGTTTGAACAGATCC                                    >  SRR4302533.3107309/1‑94 (MQ=60)

                                                           CAGATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCC                                    <  SRR4302533.125674/94‑1 (MQ=60)

                                                             GATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCAT                                  <  SRR4302533.4224001/94‑1 (MQ=60)

                                                             GATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCAT                                  <  SRR4302533.5965099/94‑1 (MQ=60)

                                                             GATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCAT                                  >  SRR4302533.6255561/1‑94 (MQ=60)

                                                             GATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCAT                                  <  SRR4302533.663627/94‑1 (MQ=60)

                                                              ATTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATC                                 <  SRR4302533.5924388/94‑1 (MQ=60)

                                                               TTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCG                                <  SRR4302533.2342189/94‑1 (MQ=60)

                                                               TTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCG                                >  SRR4302533.4710592/1‑94 (MQ=60)

                                                               TTTTCACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCG                                <  SRR4302533.823334/94‑1 (MQ=60)

                                                                   CACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTC                            >  SRR4302533.575784/1‑94 (MQ=60)

                                                                   CACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAACCGTTTGACCAGATCCATCGGCTT                            >  SRR4302533.834975/1‑94 (MQ=60)

                                                                    ACTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCT                           <  SRR4302533.4591354/94‑1 (MQ=60)

                                                                     CTGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTT                          >  SRR4302533.4560550/1‑94 (MQ=60)

                                                                      TGAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTC                         <  SRR4302533.5263197/94‑1 (MQ=60)

                                                                       GAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCT                        <  SRR4302533.3080227/94‑1 (MQ=60)

                                                                       GAATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCT                        >  SRR4302533.6318163/1‑94 (MQ=60)

                                                                        AATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTG                       >  SRR4302533.4872644/1‑94 (MQ=60)

                                                                        AATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTG                       <  SRR4302533.4558541/94‑1 (MQ=60)

                                                                        AATGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTG                       <  SRR4302533.3579377/94‑1 (MQ=60)

                                                                          TGATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAA                     >  SRR4302533.5845845/1‑94 (MQ=60)

                                                                           GATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAAC                    <  SRR4302533.483799/94‑1 (MQ=60)

                                                                           GATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAAC                    <  SRR4302533.56407/94‑1 (MQ=60)

                                                                            ATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCGCGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACC                   <  SRR4302533.2066845/94‑1 (MQ=60)

                                                                            ATCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACC                   >  SRR4302533.1488359/1‑94 (MQ=60)

                                                                             TCAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCG                  >  SRR4302533.3759880/1‑94 (MQ=60)

                                                                              CAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGC                 >  SRR4302533.1852023/1‑94 (MQ=60)

                                                                              CAGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGC                 >  SRR4302533.710868/1‑94 (MQ=60)

                                                                               AGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCC                >  SRR4302533.3061448/1‑94 (MQ=60)

                                                                               AGCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCC                >  SRR4302533.3501478/1‑94 (MQ=60)

                                                                                GCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCA               >  SRR4302533.3087518/1‑94 (MQ=60)

                                                                                GCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCA               >  SRR4302533.4123610/1‑94 (MQ=60)

                                                                                GCCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCA               <  SRR4302533.1418223/94‑1 (MQ=60)

                                                                                 CCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCAC              >  SRR4302533.2394648/1‑94 (MQ=60)

                                                                                 CCCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCAC              >  SRR4302533.6295703/1‑94 (MQ=60)

                                                                                  CCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACG             <  SRR4302533.5760256/94‑1 (MQ=60)

                                                                                  CCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACG             >  SRR4302533.2332661/1‑94 (MQ=60)

                                                                                  CCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACG             <  SRR4302533.2224353/94‑1 (MQ=60)

                                                                                  CCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACG             >  SRR4302533.2513311/1‑94 (MQ=60)

                                                                                  CCTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGGTTGAACAGATCCATCGGCTCTTCTGAACCGCCACG             >  SRR4302533.3637152/1‑94 (MQ=60)

                                                                                   CTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGG            >  SRR4302533.1784743/1‑94 (MQ=60)

                                                                                   CTTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGG            >  SRR4302533.1064786/1‑94 (MQ=60)

                                                                                    TTAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGC           >  SRR4302533.2921666/1‑94 (MQ=60)

                                                                                     TAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCT          >  SRR4302533.1076801/1‑94 (MQ=60)

                                                                                     TAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCT          >  SRR4302533.3015043/1‑94 (MQ=60)

                                                                                     TAATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCT          >  SRR4302533.3016683/1‑94 (MQ=60)

                                                                                      AATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTC         >  SRR4302533.2362408/1‑94 (MQ=60)

                                                                                      AATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTC         >  SRR4302533.690400/1‑94 (MQ=60)

                                                                                       ATGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCA        <  SRR4302533.978475/94‑1 (MQ=60)

                                                                                        TGCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAG       <  SRR4302533.1933927/94‑1 (MQ=60)

                                                                                         GCCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGA      <  SRR4302533.1363394/94‑1 (MQ=60)

                                                                                          CCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAA     <  SRR4302533.6277392/94‑1 (MQ=60)

                                                                                          CCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAA     >  SRR4302533.3089320/1‑94 (MQ=60)

                                                                                          CCGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAA     <  SRR4302533.4018317/94‑1 (MQ=60)

                                                                                           CGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAAT    <  SRR4302533.1779350/94‑1 (MQ=60)

                                                                                           CGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAAT    >  SRR4302533.3199222/1‑94 (MQ=60)

                                                                                           CGCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAAT    <  SRR4302533.3628742/94‑1 (MQ=60)

                                                                                            GCAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAATG   <  SRR4302533.609773/94‑1 (MQ=60)

                                                                                             CAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGACTGT  >  SRR4302533.4306271/1‑94 (MQ=60)

CCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTCTGAACCGCCACGGCTCAGAATGT  >  NC_000913/3640693‑3640879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`