Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,648,042	T→C	L59P (CTG→CCG)	arsC →	arsenate reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,648,042	0	T	C	100.0%	816.4 / NA	255	L59P (CTG→CCG)	arsC	arsenate reductase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (113/142); total (113/142)

Only 100 of 272 total aligned reads displayed.

CGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCTGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACC  >  NC_000913/3647952‑3648131

   cTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTAAGCGCGCTGCCGCGTa                                                                                      >  2:5074812/1‑93 (MQ=255)

      ttatCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTaaaa                                                                                   <  1:2745349/93‑1 (MQ=255)

       tatCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTA‑‑CGCGCTGCCGCGTAAAAACg                                                                                >  2:125698/1‑93 (MQ=255)

        atCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAc                                                                                 <  2:2817345/93‑1 (MQ=255)

         tCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACg                                                                                <  2:659159/93‑1 (MQ=255)

         tCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACg                                                                                <  2:1536564/93‑1 (MQ=255)

         tCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACg                                                                                <  1:2766005/93‑1 (MQ=255)

         gccATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACg                                                                                <  1:3123272/92‑1 (MQ=255)

             ttATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGa                                                                            >  1:577160/1‑93 (MQ=255)

             ttATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGa                                                                            >  2:5960331/1‑93 (MQ=255)

             ttATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGa                                                                            <  1:4050607/93‑1 (MQ=255)

              tATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGaa                                                                           >  1:581668/1‑93 (MQ=255)

               aTCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAAc                                                                          >  1:2321152/1‑93 (MQ=255)

               aTCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAAc                                                                          <  1:2379566/93‑1 (MQ=255)

                tCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAAcc                                                                         >  1:5305864/1‑93 (MQ=255)

                tCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAAcc                                                                         >  1:2998474/1‑93 (MQ=255)

                 cTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCg                                                                        <  1:927094/93‑1 (MQ=255)

                   ggAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTa                                                                      >  1:851874/1‑93 (MQ=255)

                   ggAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTa                                                                      >  2:1867915/1‑93 (MQ=255)

                    gAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTAt                                                                     <  2:3605747/93‑1 (MQ=255)

                    gAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTAt                                                                     <  1:4897578/93‑1 (MQ=255)

                    gAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTAt                                                                     <  2:1785365/93‑1 (MQ=255)

                       aCTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATgag                                                                  >  2:419237/1‑93 (MQ=255)

                        cTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATgagg                                                                 <  1:3527890/93‑1 (MQ=255)

                        cTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATgagg                                                                 <  1:3723565/93‑1 (MQ=255)

                         tCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATgagga                                                                <  2:2332549/93‑1 (MQ=255)

                            gCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCt                                                             <  2:3671849/93‑1 (MQ=255)

                            cccAACGCGCGATGAACTGGTCAGACTCATTGCCGATATGGGGATTTCCGTACGCGCGCGGCCGCGTAAAAACGTCGAACCGTATGAGGAGCt                                                             <  2:4056880/92‑1 (MQ=255)

                             ccAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTg                                                            <  2:415383/93‑1 (MQ=255)

                               aaCGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTggg                                                          >  2:622883/1‑93 (MQ=255)

                               aaCGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGATGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTggg                                                          >  1:3827033/1‑93 (MQ=255)

                                aCGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGc                                                         >  1:2601056/1‑93 (MQ=255)

                                     cgATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGc                                                    <  1:126579/93‑1 (MQ=255)

                                     cgATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGc                                                    <  1:5281775/93‑1 (MQ=255)

                                      gATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCg                                                   >  2:1597942/1‑93 (MQ=255)

                                      gATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCg                                                   >  2:966348/1‑93 (MQ=255)

                                      gATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCg                                                   <  1:6066413/93‑1 (MQ=255)

                                      gATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCg                                                   >  2:2697824/1‑93 (MQ=255)

                                       aTGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCgg                                                  <  1:1165331/93‑1 (MQ=255)

                                        tGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGa                                                 >  2:2034512/1‑93 (MQ=255)

                                        tGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGa                                                 <  2:223086/93‑1 (MQ=255)

                                         taaCTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCCCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGaa                                                <  1:3378199/92‑1 (MQ=255)

                                         gAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGaa                                                <  1:1624492/93‑1 (MQ=255)

                                         gAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATAAGGAGCTGGGCCTTGCGGaa                                                <  2:5291058/93‑1 (MQ=255)

                                          aaCTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAg                                               <  1:4073332/93‑1 (MQ=255)

                                           aCTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGa                                              <  1:4688629/93‑1 (MQ=255)

                                           aCTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGa                                              <  1:964358/93‑1 (MQ=255)

                                            cTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGAt                                             <  1:1483296/93‑1 (MQ=255)

                                             tGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATa                                            >  1:4930344/1‑93 (MQ=255)

                                                 cAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAAtt                                        >  2:2308374/1‑93 (MQ=255)

                                                 aaaaCTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAAtt                                        <  2:4296010/92‑1 (MQ=255)

                                                   aaCTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTa                                      >  2:5602684/1‑93 (MQ=255)

                                                   aaCTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTa                                      >  1:1734563/1‑93 (MQ=255)

                                                    aCTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTAc                                     >  2:4078555/1‑93 (MQ=255)

                                                     cTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACt                                    <  2:4465923/93‑1 (MQ=255)

                                                     cTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACt                                    <  1:5072603/93‑1 (MQ=255)

                                                      tCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTg                                   >  1:4642540/1‑93 (MQ=255)

                                                      tCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTg                                   >  1:3952383/1‑93 (MQ=255)

                                                       cATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGa                                  >  1:1089251/1‑93 (MQ=255)

                                                       cATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGa                                  <  2:1956585/93‑1 (MQ=255)

                                                        aTTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGag                                 >  2:1302243/1‑92 (MQ=255)

                                                        aTTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGAc                                 <  1:3778059/93‑1 (MQ=255)

                                                        aTTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGAc                                 <  1:5874793/93‑1 (MQ=255)

                                                         ttGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACg                                >  2:1510848/1‑93 (MQ=255)

                                                          tGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGa                               <  2:2897812/93‑1 (MQ=255)

                                                           gCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGAt                              >  2:2678387/1‑93 (MQ=255)

                                                             cGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCg                            <  2:5262453/93‑1 (MQ=255)

                                                             cGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCg                            >  1:2042599/1‑93 (MQ=255)

                                                             cGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCg                            >  1:3038980/1‑93 (MQ=255)

                                                             cGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCg                            <  1:5612897/93‑1 (MQ=255)

                                                                 atGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTa                        >  1:1045254/1‑93 (MQ=255)

                                                                 atGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTa                        <  2:5371863/93‑1 (MQ=255)

                                                                  tGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTaa                       >  1:251249/1‑93 (MQ=255)

                                                                  tGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTaa                       <  1:3480464/93‑1 (MQ=255)

                                                                   ggggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAAt                      <  1:442637/93‑1 (MQ=255)

                                                                   ggggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAAt                      <  2:1198633/93‑1 (MQ=255)

                                                                   ggggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAAt                      <  2:4961242/93‑1 (MQ=255)

                                                                    gggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATc                     >  2:4026924/1‑93 (MQ=255)

                                                                    gggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATc                     >  1:2916649/1‑93 (MQ=255)

                                                                    gggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATc                     <  2:26138/93‑1 (MQ=255)

                                                                    gggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATc                     <  2:6122320/93‑1 (MQ=255)

                                                                     ggATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCg                    <  1:6244558/93‑1 (MQ=255)

                                                                      gATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGa                   >  2:3435290/1‑93 (MQ=255)

                                                                       aTTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGAc                  <  1:322641/93‑1 (MQ=255)

                                                                       aTTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGAc                  >  2:6256208/1‑93 (MQ=255)

                                                                        tttCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACt                 >  1:4312280/1‑93 (MQ=255)

                                                                         ttCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACtt                <  2:4525854/93‑1 (MQ=255)

                                                                          tCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACttt               <  1:5365679/93‑1 (MQ=255)

                                                                           ccGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTa              <  1:5970177/93‑1 (MQ=255)

                                                                           ccGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTa              <  1:5845435/93‑1 (MQ=255)

                                                                            cGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAt             <  2:3138750/93‑1 (MQ=255)

                                                                            cGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAt             <  1:494846/93‑1 (MQ=255)

                                                                              tACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGc           >  2:2122608/1‑93 (MQ=255)

                                                                              tACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGc           >  1:214515/1‑93 (MQ=255)

                                                                              tACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGc           >  2:3017437/1‑93 (MQ=255)

                                                                                cgcgcgCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCtt         <  1:691043/93‑1 (MQ=255)

                                                                                 gcgcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTc        <  1:2545170/93‑1 (MQ=255)

                                                                                 gcgcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTc        <  2:3372811/93‑1 (MQ=255)

                                                                                  cgcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCa       >  2:5883066/1‑93 (MQ=255)

                                                                                  cgcgcTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCa       <  2:4709699/93‑1 (MQ=255)

CGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCTGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACC  >  NC_000913/3647952‑3648131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCTGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCCGAT  >  NC_000913/3647949‑3648135

AACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCC                                                                                               >  SRR4302533.1400313/1‑94 (MQ=60)

 ACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCG                                                                                              >  SRR4302533.2506036/1‑94 (MQ=60)

  CCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGC                                                                                             >  SRR4302533.1732957/1‑94 (MQ=60)

   CGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCG                                                                                            >  SRR4302533.2786449/1‑94 (MQ=60)

   CGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCG                                                                                            >  SRR4302533.4620013/1‑94 (MQ=60)

   CGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCG                                                                                            >  SRR4302533.3987803/1‑94 (MQ=60)

   CGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCG                                                                                            >  SRR4302533.761667/1‑94 (MQ=60)

      CTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAA                                                                                         <  SRR4302533.284252/94‑1 (MQ=60)

       TATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAA                                                                                        >  SRR4302533.3236297/1‑94 (MQ=60)

         TTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAA                                                                                      <  SRR4302533.2762178/94‑1 (MQ=60)

         TTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAA                                                                                      <  SRR4302533.2762179/94‑1 (MQ=60)

          TATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAC                                                                                     <  SRR4302533.3377114/94‑1 (MQ=60)

          TATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAC                                                                                     <  SRR4302533.378986/94‑1 (MQ=60)

          TATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAAC                                                                                     >  SRR4302533.2382460/1‑94 (MQ=60)

            TCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGT                                                                                   <  SRR4302533.2782962/94‑1 (MQ=60)

            GCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGT                                                                                   <  SRR4302533.3142474/94‑1 (MQ=60)

               ATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGA                                                                                >  SRR4302533.580564/1‑94 (MQ=60)

               ATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGA                                                                                >  SRR4302533.2582389/1‑94 (MQ=60)

                TTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAA                                                                               >  SRR4302533.585096/1‑94 (MQ=60)

                TTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAA                                                                               <  SRR4302533.4075283/94‑1 (MQ=60)

                 TATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAAC                                                                              >  SRR4302533.2335520/1‑94 (MQ=60)

                  ATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACC                                                                             <  SRR4302533.2394288/94‑1 (MQ=60)

                  ATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACC                                                                             >  SRR4302533.5337660/1‑94 (MQ=60)

                  ATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACC                                                                             >  SRR4302533.3016811/1‑94 (MQ=60)

                   TCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCG                                                                            <  SRR4302533.493366/94‑1 (MQ=60)

                   TCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCG                                                                            >  SRR4302533.3774880/1‑94 (MQ=60)

                    CTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGT                                                                           >  SRR4302533.1146701/1‑94 (MQ=60)

                    CTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGT                                                                           <  SRR4302533.932536/94‑1 (MQ=60)

                     TGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTA                                                                          <  SRR4302533.3040711/94‑1 (MQ=60)

                     TGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTA                                                                          >  SRR4302533.856860/1‑94 (MQ=60)

                      GGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCTGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTAT                                                                         <  SRR4302533.5141778/94‑1 (MQ=60)

                       GAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATG                                                                        <  SRR4302533.4927254/94‑1 (MQ=60)

                         AACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAG                                                                      <  SRR4302533.3955706/94‑1 (MQ=60)

                         AACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAG                                                                      <  SRR4302533.531561/94‑1 (MQ=60)

                         AACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAG                                                                      <  SRR4302533.5859238/94‑1 (MQ=60)

                           CTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGA                                                                    <  SRR4302533.4089949/94‑1 (MQ=60)

                           CTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGA                                                                    <  SRR4302533.4112362/94‑1 (MQ=60)

                           CTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGA                                                                    <  SRR4302533.3549634/94‑1 (MQ=60)

                           CTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGA                                                                    <  SRR4302533.3746411/94‑1 (MQ=60)

                            TCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAG                                                                   >  SRR4302533.5089081/1‑94 (MQ=60)

                            TCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAG                                                                   <  SRR4302533.5426913/94‑1 (MQ=60)

                            CCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAG                                                                   <  SRR4302533.4845077/94‑1 (MQ=60)

                              CGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCT                                                                 >  SRR4302533.4772327/1‑94 (MQ=60)

                               GCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTG                                                                >  SRR4302533.5364381/1‑94 (MQ=60)

                                CCNACGNNCGATGAACTGGTCNNACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGG                                                               <  SRR4302533.5830313/94‑1 (MQ=60)

                                CCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGG                                                               <  SRR4302533.2781082/94‑1 (MQ=60)

                                CCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGG                                                               <  SRR4302533.5915712/94‑1 (MQ=60)

                                 CAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGG                                                              >  SRR4302533.3803506/1‑94 (MQ=60)

                                 CAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGG                                                              >  SRR4302533.1196870/1‑94 (MQ=60)

                                 CAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGATGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGG                                                              >  SRR4302533.3850428/1‑94 (MQ=60)

                                  AACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGC                                                             >  SRR4302533.2617037/1‑94 (MQ=60)

                                    CGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCT                                                           >  SRR4302533.4406702/1‑94 (MQ=60)

                                     GCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTT                                                          <  SRR4302533.2106195/94‑1 (MQ=60)

                                     GCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTT                                                          <  SRR4302533.314738/94‑1 (MQ=60)

                                      CGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTG                                                         <  SRR4302533.893637/94‑1 (MQ=60)

                                       GCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGATCCGTATGAGGAGCTGGGCCTTGC                                                        <  SRR4302533.4256777/94‑1 (MQ=60)

                                        CGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCG                                                       <  SRR4302533.5313422/94‑1 (MQ=60)

                                        CGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCG                                                       <  SRR4302533.127371/94‑1 (MQ=60)

                                         GATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGG                                                      <  SRR4302533.944844/94‑1 (MQ=60)

                                         GATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGG                                                      <  SRR4302533.4541630/94‑1 (MQ=60)

                                         GATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGG                                                      >  SRR4302533.1452756/1‑94 (MQ=60)

                                         GATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGG                                                      <  SRR4302533.3300993/94‑1 (MQ=60)

                                         GATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGG                                                      <  SRR4302533.6103127/94‑1 (MQ=60)

                                          ATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGA                                                     <  SRR4302533.1172319/94‑1 (MQ=60)

                                            TAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCCCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAG                                                   <  SRR4302533.3399056/94‑1 (MQ=60)

                                            GAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAG                                                   <  SRR4302533.1634331/94‑1 (MQ=60)

                                             AACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGA                                                  <  SRR4302533.4098129/94‑1 (MQ=60)

                                              ACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGAT                                                 <  SRR4302533.970020/94‑1 (MQ=60)

                                              ACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGAT                                                 <  SRR4302533.4717051/94‑1 (MQ=60)

                                               CTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATA                                                >  SRR4302533.4960201/1‑94 (MQ=60)

                                               CTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATA                                                <  SRR4302533.1492250/94‑1 (MQ=60)

                                                TGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAA                                               <  SRR4302533.3139817/94‑1 (MQ=60)

                                                TGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCAGCAGATAA                                               >  SRR4302533.2383818/1‑94 (MQ=60)

                                                 GGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAA                                              >  SRR4302533.2510562/1‑94 (MQ=60)

                                                  GTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAAT                                             <  SRR4302533.2937580/94‑1 (MQ=60)

                                                   TCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATT                                            >  SRR4302533.3979989/1‑94 (MQ=60)

                                                    CAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTT                                           <  SRR4302533.1542336/94‑1 (MQ=60)

                                                    CAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTT                                           >  SRR4302533.612184/1‑94 (MQ=60)

                                                     AAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTA                                          >  SRR4302533.1745088/1‑94 (MQ=60)

                                                      AACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTAC                                         >  SRR4302533.3671909/1‑94 (MQ=60)

                                                       ACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACT                                        <  SRR4302533.5005413/94‑1 (MQ=60)

                                                       ACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACT                                        <  SRR4302533.6110317/94‑1 (MQ=60)

                                                       ACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACT                                        <  SRR4302533.1053633/94‑1 (MQ=60)

                                                        CTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTG                                       >  SRR4302533.3976478/1‑94 (MQ=60)

                                                        CTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTG                                       <  SRR4302533.5103263/94‑1 (MQ=60)

                                                        CTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTG                                       >  SRR4302533.3529776/1‑94 (MQ=60)

                                                        CTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTG                                       >  SRR4302533.5905472/1‑94 (MQ=60)

                                                        CTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTG                                       >  SRR4302533.4670667/1‑94 (MQ=60)

                                                         TCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGGTAAATTTACTGA                                      >  SRR4302533.1713424/1‑94 (MQ=60)

                                                         TCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGA                                      <  SRR4302533.2194247/94‑1 (MQ=60)

                                                         TCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGA                                      >  SRR4302533.1095680/1‑94 (MQ=60)

                                                         TCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGA                                      >  SRR4302533.5852462/1‑94 (MQ=60)

                                                          CATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGAC                                     <  SRR4302533.2599639/94‑1 (MQ=60)

                                                           ATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACG                                    <  SRR4302533.5910305/94‑1 (MQ=60)

                                                           ATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACG                                    <  SRR4302533.345988/94‑1 (MQ=60)

                                                           ATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACG                                    <  SRR4302533.3801207/94‑1 (MQ=60)

                                                           ATTGCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACG                                    <  SRR4302533.3584370/94‑1 (MQ=60)

                                                              GCCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATC                                 <  SRR4302533.5886079/94‑1 (MQ=60)

                                                              GCCAATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATC                                 <  SRR4302533.4416270/94‑1 (MQ=60)

                                                               CCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCG                                >  SRR4302533.2055193/1‑94 (MQ=60)

                                                               CCGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCG                                >  SRR4302533.3057576/1‑94 (MQ=60)

                                                                CGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGG                               <  SRR4302533.5646823/94‑1 (MQ=60)

                                                                CGATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGG                               >  SRR4302533.3854010/1‑94 (MQ=60)

                                                                  ATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTT                             >  SRR4302533.2538011/1‑94 (MQ=60)

                                                                  ATATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTT                             <  SRR4302533.6088568/94‑1 (MQ=60)

                                                                   TATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTA                            >  SRR4302533.1051397/1‑94 (MQ=60)

                                                                    ATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAA                           >  SRR4302533.252797/1‑94 (MQ=60)

                                                                    ATGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAA                           >  SRR4302533.5968062/1‑94 (MQ=60)

                                                                     TGGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAAT                          <  SRR4302533.3501936/94‑1 (MQ=60)

                                                                      GGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATC                         <  SRR4302533.3533539/94‑1 (MQ=60)

                                                                      GGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATC                         <  SRR4302533.445283/94‑1 (MQ=60)

                                                                      GGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATC                         >  SRR4302533.2934531/1‑94 (MQ=60)

                                                                      GGGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATC                         >  SRR4302533.1541095/1‑94 (MQ=60)

                                                                       GGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCG                        <  SRR4302533.112515/94‑1 (MQ=60)

                                                                       GGGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCG                        >  SRR4302533.5680929/1‑94 (MQ=60)

                                                                        GGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTTCGGAAGATAAATATACAGACGAGCGGTTAAACGA                       >  SRR4302533.6346864/1‑94 (MQ=60)

                                                                        GGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGA                       <  SRR4302533.2624635/94‑1 (MQ=60)

                                                                        GGATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGA                       <  SRR4302533.6281937/94‑1 (MQ=60)

                                                                         GATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGACGATGAATTTACTGACGATCGGTTAATCGAC                      >  SRR4302533.293998/1‑94 (MQ=60)

                                                                          ATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACT                     >  SRR4302533.4338239/1‑94 (MQ=60)

                                                                          ATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACT                     <  SRR4302533.324611/94‑1 (MQ=60)

                                                                          ATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACT                     <  SRR4302533.5150661/94‑1 (MQ=60)

                                                                          ATTTCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACT                     >  SRR4302533.4699024/1‑94 (MQ=60)

                                                                            TCCCGTACGCGCGCGGCCGCGTAAAAGCGTCGAACCTTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGCCGATCGGTTAATCGACTTT                   <  SRR4302533.2545453/94‑1 (MQ=60)

                                                                             TCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTA                  >  SRR4302533.4965983/1‑94 (MQ=60)

                                                                             TCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTA                  <  SRR4302533.5397911/94‑1 (MQ=60)

                                                                             TCCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGCATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTCATCGACTTTA                  >  SRR4302533.1859764/1‑94 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302533.5880773/94‑1 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302533.946165/94‑1 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302533.702943/94‑1 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302533.5320276/94‑1 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302533.2050364/94‑1 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 >  SRR4302533.3078753/1‑94 (MQ=60)

                                                                              CCGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTAT                 <  SRR4302533.6006318/94‑1 (MQ=60)

                                                                               CGTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATG                <  SRR4302533.497795/94‑1 (MQ=60)

                                                                                GTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGC               >  SRR4302533.5436877/1‑94 (MQ=60)

                                                                                GTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGC               >  SRR4302533.4790338/1‑94 (MQ=60)

                                                                                GTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGC               >  SRR4302533.5794337/1‑94 (MQ=60)

                                                                                GTACGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGC               >  SRR4302533.215864/1‑94 (MQ=60)

                                                                                   CGCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTC            <  SRR4302533.695128/94‑1 (MQ=60)

                                                                                    GCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATACATTTACTGACGATCGGTTAATCGACTTTATGCTTCG           >  SRR4302533.4950749/1‑94 (MQ=60)

                                                                                    GCGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCA           <  SRR4302533.2560831/94‑1 (MQ=60)

                                                                                     CGCGCTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAG          <  SRR4302533.2227039/94‑1 (MQ=60)

                                                                                         CTGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACC      >  SRR4302533.666711/1‑94 (MQ=60)

                                                                                          TGCCGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCC     <  SRR4302533.122551/94‑1 (MQ=60)

                                                                                             CGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCCGAT  <  SRR4302533.2013160/94‑1 (MQ=60)

                                                                                             CGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCCGAT  <  SRR4302533.4475047/94‑1 (MQ=60)

                                                                                             CGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCCGAT  <  SRR4302533.1491210/94‑1 (MQ=60)

                                                                                             CGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCCGAT  >  SRR4302533.3969056/1‑94 (MQ=60)

AACCGACTATTATCCATTATCTGGAAACTCCGCCAACGCGCGATGAACTGGTCAAACTCATTGCCGATATGGGGATTTCCGTACGCGCGCTGCTGCGTAAAAACGTCGAACCGTATGAGGAGCTGGGCCTTGCGGAAGATAAATTTACTGACGATCGGTTAATCGACTTTATGCTTCAGCACCCGAT  >  NC_000913/3647949‑3648135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`