Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,681,661	T→C	T519A (ACA→GCA)	yhjK ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,681,661	0	T	C	100.0%	954.6 / NA	293	T519A (ACA→GCA)	yhjK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (128/165); total (128/165)

Only 100 of 298 total aligned reads displayed.

GAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGTTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACCG  >  NC_000913/3681571‑3681750

gAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTc                                                                                         <  2:5115815/93‑1 (MQ=255)

 aaCTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTcc                                                                                        >  1:3655217/1‑93 (MQ=255)

 aaCTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTcc                                                                                        <  1:1678881/93‑1 (MQ=255)

  aCTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTccc                                                                                       >  1:3434405/1‑93 (MQ=255)

   cTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCg                                                                                      >  2:3529235/1‑93 (MQ=255)

      cGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCt                                                                                   >  2:1604590/1‑93 (MQ=255)

        gCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGa                                                                                 >  2:2303892/1‑93 (MQ=255)

         cATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGaa                                                                                <  1:1432496/93‑1 (MQ=255)

          aTTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAAt                                                                               >  2:2986463/1‑93 (MQ=255)

          aTTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAAt                                                                               >  1:2697677/1‑93 (MQ=255)

           ttGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATg                                                                              <  1:3869094/93‑1 (MQ=255)

           ttGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATg                                                                              <  1:5304866/93‑1 (MQ=255)

            tGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGc                                                                             <  1:1477621/93‑1 (MQ=255)

             gcgcAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATACg                                                                            >  1:1329458/1‑93 (MQ=255)

              cgcAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGa                                                                           <  1:4976581/93‑1 (MQ=255)

              cgcAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGa                                                                           <  1:3984081/93‑1 (MQ=255)

              cgcAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGa                                                                           <  1:3782778/93‑1 (MQ=255)

              cgcAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGa                                                                           <  1:6213440/93‑1 (MQ=255)

                 aGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAg                                                                        <  2:5896271/93‑1 (MQ=255)

                 aGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAg                                                                        <  1:5796616/93‑1 (MQ=255)

                 aGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAg                                                                        <  2:1320621/93‑1 (MQ=255)

                 aGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAg                                                                        <  1:4414663/93‑1 (MQ=255)

                 aGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAg                                                                        <  1:1940698/93‑1 (MQ=255)

                 aGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCGCCCGGCTGAATGCGATAg                                                                        <  1:5183763/93‑1 (MQ=255)

                  gCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGc                                                                       <  1:5748617/93‑1 (MQ=255)

                   cggacggaGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCg                                                                      <  1:4125790/93‑1 (MQ=255)

                    gggcggaGGATTGACACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCgg                                                                     <  1:3131992/90‑1 (MQ=255)

                    ggacggaGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCgg                                                                     >  1:2295189/1‑93 (MQ=255)

                    ggacggaGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCgg                                                                     <  2:1070036/93‑1 (MQ=255)

                     gacggaGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCggg                                                                    >  2:774555/1‑93 (MQ=255)

                      acggaGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGt                                                                   >  2:4114142/1‑93 (MQ=255)

                      acggaGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGt                                                                   <  1:4706672/93‑1 (MQ=255)

                         gaggaTTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTaa                                                                <  2:5614747/93‑1 (MQ=255)

                         gaggaTTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGGTaa                                                                >  1:1013273/1‑93 (MQ=255)

                           ggaTTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACa                                                              <  2:2738697/93‑1 (MQ=255)

                            gaTTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAg                                                             >  2:1031076/1‑93 (MQ=255)

                            gaTTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAg                                                             >  1:2573228/1‑93 (MQ=255)

                            gaTTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTGCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAg                                                             <  2:5845753/93‑1 (MQ=255)

                              ttGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGtt                                                           >  1:1504567/1‑93 (MQ=255)

                                gCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTcc                                                         >  2:424185/1‑93 (MQ=255)

                                gCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTcc                                                         <  2:4587243/93‑1 (MQ=255)

                                gCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGGTAACAGTTcc                                                         >  2:5445279/1‑93 (MQ=255)

                                 ccACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCa                                                        <  2:648924/93‑1 (MQ=255)

                                  cACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAg                                                       <  2:5238751/93‑1 (MQ=255)

                                  cACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAg                                                       <  2:1641907/93‑1 (MQ=255)

                                    ccGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCa                                                     <  2:2590854/93‑1 (MQ=255)

                                    ccGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCa                                                     >  2:853185/1‑93 (MQ=255)

                                    ccGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCa                                                     <  1:417803/93‑1 (MQ=255)

                                      gcagcaTGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCata                                                   <  1:1120465/93‑1 (MQ=255)

                                      gcagcaTGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCata                                                   >  2:2684513/1‑93 (MQ=255)

                                        agcaTGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCTCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATc                                                 <  1:4273745/93‑1 (MQ=255)

                                        agcaTGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATc                                                 <  1:3091734/93‑1 (MQ=255)

                                        agcaTGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATc                                                 <  2:3912659/93‑1 (MQ=255)

                                        agcaTGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATc                                                 <  2:1806581/93‑1 (MQ=255)

                                            tGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGcc                                             >  2:3336397/1‑93 (MQ=255)

                                            tGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGcc                                             >  1:1174456/1‑93 (MQ=255)

                                            tGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGcc                                             >  2:4183878/1‑93 (MQ=255)

                                              aGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGccac                                           <  1:4759494/93‑1 (MQ=255)

                                                ggTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGccacca                                         <  1:774555/93‑1 (MQ=255)

                                                  tcgtcAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCata                                       <  1:3283345/93‑1 (MQ=255)

                                                   cgtcAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCatat                                      >  1:3055631/1‑93 (MQ=255)

                                                   cgtcAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCatat                                      <  2:2812483/93‑1 (MQ=255)

                                                    gtcAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATAtt                                     <  1:2511165/93‑1 (MQ=255)

                                                    gtcAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATAtt                                     <  2:3044688/93‑1 (MQ=255)

                                                     tcAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTc                                    <  1:5086516/93‑1 (MQ=255)

                                                      cAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCg                                   >  1:1591558/1‑93 (MQ=255)

                                                       aaTACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCgg                                  <  2:2761296/93‑1 (MQ=255)

                                                       aaTACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCgg                                  <  1:1905276/93‑1 (MQ=255)

                                                       aaTACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCgg                                  >  2:4945602/1‑93 (MQ=255)

                                                         tACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGt                                >  1:4618264/1‑93 (MQ=255)

                                                         tACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGt                                <  2:5381950/93‑1 (MQ=255)

                                                           cGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGc                              >  2:6183561/1‑93 (MQ=255)

                                                            gTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCTGCCACCATATTCGGGGGCa                             >  1:5676179/1‑93 (MQ=255)

                                                            gTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCa                             >  2:525332/1‑93 (MQ=255)

                                                             tCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCAt                            >  2:2290495/1‑93 (MQ=255)

                                                             tCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGAGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGCGCAt                            >  1:3614886/1‑93 (MQ=255)

                                                              cGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATc                           <  1:5357430/93‑1 (MQ=255)

                                                              cGGCTTTCTGTCACTTCCAGAATCAGTGCCCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATc                           <  2:1399163/93‑1 (MQ=255)

                                                               ggCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCa                          >  2:2036567/1‑93 (MQ=255)

                                                                gCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAg                         >  1:938851/1‑93 (MQ=255)

                                                                gCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAg                         >  2:555681/1‑93 (MQ=255)

                                                                     cTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCa                    >  1:5627041/1‑93 (MQ=255)

                                                                     cTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCa                    >  1:6161874/1‑93 (MQ=255)

                                                                      tGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAg                   <  2:1247704/93‑1 (MQ=255)

                                                                      tGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAg                   >  2:4770615/1‑93 (MQ=255)

                                                                       gTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAgc                  >  2:3236341/1‑93 (MQ=255)

                                                                          aCTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCa               >  1:5168757/1‑93 (MQ=255)

                                                                            ttCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCaga             <  2:5955660/93‑1 (MQ=255)

                                                                            ttCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCaga             <  2:5755527/93‑1 (MQ=255)

                                                                            ttCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATACTCCACCATATTCGGGTGCATCAGTTGCAGCGCaga             >  2:2387066/1‑93 (MQ=255)

                                                                               cAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCagagag          <  2:3946648/93‑1 (MQ=255)

                                                                                aGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAgg         <  2:1985225/93‑1 (MQ=255)

                                                                                aGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAgg         >  1:3181882/1‑93 (MQ=255)

                                                                                aGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAgg         >  1:66207/1‑93 (MQ=255)

                                                                                aGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAgg         <  2:215052/93‑1 (MQ=255)

                                                                                 gAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGt        >  2:4681700/1‑93 (MQ=255)

                                                                                    tCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTa     >  1:2159934/1‑93 (MQ=255)

                                                                                     cAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTAc    <  2:4932192/93‑1 (MQ=255)

                                                                                     cAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTAc    <  1:5967007/93‑1 (MQ=255)

                                                                                       gtgcTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACCg  >  2:2887639/1‑93 (MQ=255)

GAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGTTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACCG  >  NC_000913/3681571‑3681750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCGAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGTTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACCGAC  >  NC_000913/3681569‑3681752

CCGAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCT                                                                                            >  SRR4302533.969033/1‑94 (MQ=60)

CCGAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCT                                                                                            >  SRR4302533.4341746/1‑94 (MQ=60)

CCGAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCT                                                                                            <  SRR4302533.385197/94‑1 (MQ=60)

 CGAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTC                                                                                           <  SRR4302533.2216141/94‑1 (MQ=60)

 CGAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTC                                                                                           >  SRR4302533.5764536/1‑94 (MQ=60)

  GAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCC                                                                                          >  SRR4302533.3677689/1‑94 (MQ=60)

   AACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCC                                                                                         <  SRR4302533.1689050/94‑1 (MQ=60)

   AACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCC                                                                                         >  SRR4302533.3455619/1‑94 (MQ=60)

     CTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGG                                                                                       >  SRR4302533.6014356/1‑94 (MQ=60)

      TCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGC                                                                                      <  SRR4302533.3168397/94‑1 (MQ=60)

       CCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCT                                                                                     >  SRR4302533.2182324/1‑94 (MQ=60)

       CCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCT                                                                                     <  SRR4302533.752370/94‑1 (MQ=60)

       CCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCT                                                                                     >  SRR4302533.3779811/1‑94 (MQ=60)

          GCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACTTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAA                                                                                  <  SRR4302533.2990371/94‑1 (MQ=60)

          GCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAA                                                                                  <  SRR4302533.1448325/94‑1 (MQ=60)

           CATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAAT                                                                                 <  SRR4302533.1441153/94‑1 (MQ=60)

           CATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAAT                                                                                 <  SRR4302533.3517217/94‑1 (MQ=60)

           CATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAAT                                                                                 <  SRR4302533.1435008/94‑1 (MQ=60)

           CATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAAT                                                                                 >  SRR4302533.2714206/1‑94 (MQ=60)

            ATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATG                                                                                >  SRR4302533.1514572/1‑94 (MQ=60)

             TTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGC                                                                               <  SRR4302533.5336656/94‑1 (MQ=60)

             TTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGC                                                                               <  SRR4302533.3892716/94‑1 (MQ=60)

              TGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCG                                                                              <  SRR4302533.1486549/94‑1 (MQ=60)

              TGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATACG                                                                              >  SRR4302533.1337435/1‑94 (MQ=60)

               GCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGA                                                                             >  SRR4302533.3108529/1‑94 (MQ=60)

                CGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGAT                                                                            <  SRR4302533.3805945/94‑1 (MQ=60)

                CGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGAT                                                                            >  SRR4302533.3149830/1‑94 (MQ=60)

                CGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGAT                                                                            <  SRR4302533.4008340/94‑1 (MQ=60)

                CGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGAT                                                                            <  SRR4302533.3240271/94‑1 (MQ=60)

                CGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGAT                                                                            <  SRR4302533.5006758/94‑1 (MQ=60)

                CGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGAT                                                                            >  SRR4302533.1255156/1‑94 (MQ=60)

                CGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGAT                                                                            <  SRR4302533.6250698/94‑1 (MQ=60)

                 GCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATA                                                                           <  SRR4302533.874724/94‑1 (MQ=60)

                  CAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAG                                                                          >  SRR4302533.3369597/1‑94 (MQ=60)

                  CAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAG                                                                          <  SRR4302533.862817/94‑1 (MQ=60)

                  CAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAG                                                                          <  SRR4302533.768556/94‑1 (MQ=60)

                  CAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAG                                                                          <  SRR4302533.4484494/94‑1 (MQ=60)

                   AGCGGCGGGAGGATTGCCAGCGCAGCATGAGGTGCGTCAATACGTCGGCTTTCTGTGACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGC                                                                         <  SRR4302533.537206/94‑1 (MQ=60)

                   AGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGC                                                                         <  SRR4302533.188257/94‑1 (MQ=60)

                   AGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGC                                                                         <  SRR4302533.537205/94‑1 (MQ=60)

                   AGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGC                                                                         <  SRR4302533.4441320/94‑1 (MQ=60)

                   AGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGC                                                                         <  SRR4302533.5831637/94‑1 (MQ=60)

                   AGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGC                                                                         <  SRR4302533.5792414/94‑1 (MQ=60)

                   AGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGC                                                                         <  SRR4302533.1952533/94‑1 (MQ=60)

                   AGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCGCCCGGCTGAATGCGATAGC                                                                         <  SRR4302533.5215056/94‑1 (MQ=60)

                    GCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCG                                                                        <  SRR4302533.4589143/94‑1 (MQ=60)

                    GCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCG                                                                        <  SRR4302533.3664683/94‑1 (MQ=60)

                    GCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCG                                                                        <  SRR4302533.5783298/94‑1 (MQ=60)

                     CGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGG                                                                       <  SRR4302533.4150835/94‑1 (MQ=60)

                     CGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGG                                                                       >  SRR4302533.4757915/1‑94 (MQ=60)

                     CGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGG                                                                       <  SRR4302533.2551139/94‑1 (MQ=60)

                     CGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGG                                                                       >  SRR4302533.2309403/1‑94 (MQ=60)

                      GGGCGGAGGATTGACACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGG                                                                      <  SRR4302533.3151249/94‑1 (MQ=60)

                      GGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGG                                                                      <  SRR4302533.3132710/94‑1 (MQ=60)

                      GGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGG                                                                      <  SRR4302533.5697413/94‑1 (MQ=60)

                      GGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGG                                                                      <  SRR4302533.4146889/94‑1 (MQ=60)

                       GACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGT                                                                     >  SRR4302533.4871611/1‑94 (MQ=60)

                        ACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTT                                                                    <  SRR4302533.4735197/94‑1 (MQ=60)

                         CGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTA                                                                   >  SRR4302533.5799614/1‑94 (MQ=60)

                          GGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAA                                                                  >  SRR4302533.4316022/1‑94 (MQ=60)

                          GGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGGTAA                                                                  >  SRR4302533.1019206/1‑94 (MQ=60)

                             GGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAG                                                               <  SRR4302533.4164312/94‑1 (MQ=60)

                             GGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAG                                                               <  SRR4302533.5916534/94‑1 (MQ=60)

                             GGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAG                                                               >  SRR4302533.2589057/1‑94 (MQ=60)

                               ATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTT                                                             >  SRR4302533.1513639/1‑94 (MQ=60)

                               ATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCAAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTT                                                             <  SRR4302533.3401034/94‑1 (MQ=60)

                                  GCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCA                                                          <  SRR4302533.1947798/94‑1 (MQ=60)

                                  GCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCA                                                          >  SRR4302533.5950911/1‑94 (MQ=60)

                                  GCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCA                                                          >  SRR4302533.1503504/1‑94 (MQ=60)

                                   CCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATTCGATAGCGGGATAACAGTTCCAG                                                         >  SRR4302533.6217566/1‑94 (MQ=60)

                                    CACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGC                                                        >  SRR4302533.3266480/1‑94 (MQ=60)

                                    CACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGC                                                        >  SRR4302533.3594485/1‑94 (MQ=60)

                                    CACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGC                                                        <  SRR4302533.5143038/94‑1 (MQ=60)

                                     ACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCA                                                       <  SRR4302533.1204362/94‑1 (MQ=60)

                                      CCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCAT                                                      <  SRR4302533.420309/94‑1 (MQ=60)

                                      CCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCAT                                                      <  SRR4302533.2252950/94‑1 (MQ=60)

                                       CGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATA                                                     <  SRR4302533.5166903/94‑1 (MQ=60)

                                        GCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATAT                                                    <  SRR4302533.1127112/94‑1 (MQ=60)

                                        GCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATAT                                                    <  SRR4302533.1625230/94‑1 (MQ=60)

                                         CAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATC                                                   >  SRR4302533.416181/1‑94 (MQ=60)

                                          AGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCTCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCC                                                  <  SRR4302533.4299460/94‑1 (MQ=60)

                                          AGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCC                                                  <  SRR4302533.2542427/94‑1 (MQ=60)

                                          AGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCC                                                  <  SRR4302533.5495997/94‑1 (MQ=60)

                                          AGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCC                                                  >  SRR4302533.5278841/1‑94 (MQ=60)

                                          AGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCC                                                  <  SRR4302533.3110744/94‑1 (MQ=60)

                                           GCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCG                                                 <  SRR4302533.5210776/94‑1 (MQ=60)

                                            CATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGC                                                >  SRR4302533.4781155/1‑94 (MQ=60)

                                            CATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGC                                                >  SRR4302533.1525201/1‑94 (MQ=60)

                                             ATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCC                                               >  SRR4302533.1128312/1‑94 (MQ=60)

                                             ATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCC                                               >  SRR4302533.4726101/1‑94 (MQ=60)

                                             ATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCC                                               >  SRR4302533.1181506/1‑94 (MQ=60)

                                                AGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCAGC                                            <  SRR4302533.5661693/94‑1 (MQ=60)

                                                AGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACC                                            >  SRR4302533.3867903/1‑94 (MQ=60)

                                                AGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACC                                            >  SRR4302533.1373670/1‑94 (MQ=60)

                                                AGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACC                                            <  SRR4302533.4788366/94‑1 (MQ=60)

                                                  GGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCAT                                          <  SRR4302533.779108/94‑1 (MQ=60)

                                                  GGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCAT                                          >  SRR4302533.3970124/1‑94 (MQ=60)

                                                   GTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATA                                         <  SRR4302533.2629026/94‑1 (MQ=60)

                                                    TCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATAT                                        >  SRR4302533.3074366/1‑94 (MQ=60)

                                                    TCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATAT                                        <  SRR4302533.3303613/94‑1 (MQ=60)

                                                      GTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTC                                      <  SRR4302533.2526639/94‑1 (MQ=60)

                                                      GTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTC                                      <  SRR4302533.5206926/94‑1 (MQ=60)

                                                      GTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTC                                      >  SRR4302533.3102061/1‑94 (MQ=60)

                                                      GTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCCGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTC                                      >  SRR4302533.5751574/1‑94 (MQ=60)

                                                       TCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCG                                     <  SRR4302533.3923806/94‑1 (MQ=60)

                                                       TCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCG                                     <  SRR4302533.5117251/94‑1 (MQ=60)

                                                       TCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCG                                     >  SRR4302533.5486839/1‑94 (MQ=60)

                                                       TCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCG                                     >  SRR4302533.1601184/1‑94 (MQ=60)

                                                       TCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCG                                     <  SRR4302533.4224986/94‑1 (MQ=60)

                                                         AATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGG                                   <  SRR4302533.1916899/94‑1 (MQ=60)

                                                          ATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGT                                  >  SRR4302533.1937127/1‑94 (MQ=60)

                                                          ATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGT                                  >  SRR4302533.4646252/1‑94 (MQ=60)

                                                             CGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCTGCCACCATATTCGGGGGCA                               >  SRR4302533.5710460/1‑94 (MQ=60)

                                                             CGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCA                               >  SRR4302533.947249/1‑94 (MQ=60)

                                                             CGTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCA                               <  SRR4302533.2138103/94‑1 (MQ=60)

                                                              GTCGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGAGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGCGCAT                              >  SRR4302533.3637128/1‑94 (MQ=60)

                                                                CGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCA                            <  SRR4302533.1875646/94‑1 (MQ=60)

                                                                CGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCA                            <  SRR4302533.5389590/94‑1 (MQ=60)

                                                                CGGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCA                            <  SRR4302533.661047/94‑1 (MQ=60)

                                                                 GGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAG                           >  SRR4302533.2032368/1‑94 (MQ=60)

                                                                 GGCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAG                           >  SRR4302533.944366/1‑94 (MQ=60)

                                                                  GCTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGT                          <  SRR4302533.6127523/94‑1 (MQ=60)

                                                                   CTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTT                         <  SRR4302533.3187838/94‑1 (MQ=60)

                                                                   CTTTCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTT                         >  SRR4302533.507350/1‑94 (MQ=60)

                                                                      TCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCA                      >  SRR4302533.6198926/1‑94 (MQ=60)

                                                                      TCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCA                      >  SRR4302533.5661062/1‑94 (MQ=60)

                                                                      TCTGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCA                      >  SRR4302533.5044690/1‑94 (MQ=60)

                                                                        TGTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGC                    >  SRR4302533.1512586/1‑94 (MQ=60)

                                                                         GTCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCG                   <  SRR4302533.4121234/94‑1 (MQ=60)

                                                                          TCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGC                  >  SRR4302533.2513994/1‑94 (MQ=60)

                                                                          TCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGC                  >  SRR4302533.6246181/1‑94 (MQ=60)

                                                                          TCACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGC                  <  SRR4302533.1651233/94‑1 (MQ=60)

                                                                           CACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCA                 >  SRR4302533.1096163/1‑94 (MQ=60)

                                                                           CACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCA                 >  SRR4302533.5199955/1‑94 (MQ=60)

                                                                            CCTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAG                <  SRR4302533.4683772/94‑1 (MQ=60)

                                                                            ACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAG                <  SRR4302533.1449452/94‑1 (MQ=60)

                                                                            ACTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAG                <  SRR4302533.3865449/94‑1 (MQ=60)

                                                                             CTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTTACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGA               <  SRR4302533.4307293/94‑1 (MQ=60)

                                                                             CTTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGA               <  SRR4302533.3803661/94‑1 (MQ=60)

                                                                              TTCCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAG              >  SRR4302533.2707286/1‑94 (MQ=60)

                                                                                CCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAG            <  SRR4302533.2510620/94‑1 (MQ=60)

                                                                                CCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAG            <  SRR4302533.1174817/94‑1 (MQ=60)

                                                                                CCAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAG            <  SRR4302533.5302001/94‑1 (MQ=60)

                                                                                 CAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGG           >  SRR4302533.3201458/1‑94 (MQ=60)

                                                                                 CAGAATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGG           >  SRR4302533.66634/1‑94 (MQ=60)

                                                                                     ATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTA       >  SRR4302533.4956877/1‑94 (MQ=60)

                                                                                     ATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTA       >  SRR4302533.3654527/1‑94 (MQ=60)

                                                                                     ATCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTA       >  SRR4302533.2173231/1‑94 (MQ=60)

                                                                                      TCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTAC      <  SRR4302533.6268704/94‑1 (MQ=60)

                                                                                      TCAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTAC      <  SRR4302533.2858667/94‑1 (MQ=60)

                                                                                       CAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACC     <  SRR4302533.4243154/94‑1 (MQ=60)

                                                                                       CAGTGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACC     <  SRR4302533.6003129/94‑1 (MQ=60)

                                                                                         GTGCTCCCGGCTGAATGCGATAGCGGGATAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACCGC   >  SRR4302533.4162876/1‑94 (MQ=60)

                                                                                          TGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACCGAC  <  SRR4302533.5235143/94‑1 (MQ=60)

                                                                                          TGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACCGAC  <  SRR4302533.3161185/94‑1 (MQ=60)

                                                                                          TGCTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACCGAC  <  SRR4302533.6009469/94‑1 (MQ=60)

CCGAACTCCGGCATTGCGCAGCGGACGGAGGATTGCCACCGCAGCATGAGGGTCGTCAATACGTCGGCTTTCTGTCACTTCCAGAATCAGTGTTCCCGGCTGAATGCGATAGCGGGTTAACAGTTCCAGCATATCCGCCACCATATTCGGGTGCATCAGTTGCAGCGCAGAGAGGTTTACCGAC  >  NC_000913/3681569‑3681752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`