Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,683,091	A→G	V42A (GTC→GCC)	yhjK ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,683,091	0	A	G	99.6%	837.3 / NA	259	V42A (GTC→GCC)	yhjK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (122/136); minor base C (0/1); total (122/137)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 265 total aligned reads displayed.

CTGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGACAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAA  >  NC_000913/3683001‑3683180

 tGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCag                                                                                        >  1:4397494/1‑93 (MQ=255)

  taCCGCGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCaga                                                                                       <  1:3802947/92‑1 (MQ=255)

  gACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCaga                                                                                       <  2:750891/93‑1 (MQ=255)

  gACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCaga                                                                                       <  2:3659265/93‑1 (MQ=255)

   aCCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCagag                                                                                      <  1:155190/93‑1 (MQ=255)

    ccACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAgagc                                                                                     >  2:6232203/1‑93 (MQ=255)

    ccACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAgagc                                                                                     <  2:1796486/93‑1 (MQ=255)

      aCGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAgagcgg                                                                                   >  2:5512576/1‑92 (MQ=255)

      aCGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAgagcga                                                                                   <  2:3235002/93‑1 (MQ=255)

      aCGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAgagcga                                                                                   >  1:4480747/1‑93 (MQ=255)

       cGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAgagcgag                                                                                  <  1:462054/93‑1 (MQ=255)

           tGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAAt                                                                              <  2:522700/93‑1 (MQ=255)

           tGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAAt                                                                              <  2:1336704/93‑1 (MQ=255)

             ccGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGc                                                                            <  2:1996915/93‑1 (MQ=255)

              cgctttAATGCTGGCAAGAATAGCTCCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCt                                                                           <  1:5721937/90‑1 (MQ=255)

               ggTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCtt                                                                          <  2:254632/93‑1 (MQ=255)

               ggTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCtt                                                                          >  1:1501157/1‑93 (MQ=255)

               ggTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCtt                                                                          <  2:870585/93‑1 (MQ=255)

                gTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCttt                                                                         >  1:4956465/1‑93 (MQ=255)

                 tttAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTc                                                                        <  2:219186/93‑1 (MQ=255)

                 tttAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTc                                                                        <  1:1134856/93‑1 (MQ=255)

                  ttAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTcc                                                                       <  2:1157793/93‑1 (MQ=255)

                  ttAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTcc                                                                       <  1:845625/93‑1 (MQ=255)

                  ttAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTcc                                                                       <  1:206654/93‑1 (MQ=255)

                   tAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGGTAAGGGTTGGCGGGCAGAGCGTGCACTGCTTTccg                                                                      >  1:4198308/1‑92 (MQ=255)

                   tAATGCTGGCAAGAATAGCTTCCACTTCGGGAATATCGCCTTCCAAAATAGCTGAAGATAAGGGTTCGCGGCCAGAGCGAGCAATGCTTTcga                                                                      <  2:5010223/93‑3 (MQ=255)

                    aaTGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAg                                                                     >  2:1241549/1‑93 (MQ=255)

                      tGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGtt                                                                   >  1:5459311/1‑93 (MQ=255)

                        cTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGc                                                                 <  1:3917438/93‑1 (MQ=255)

                         tGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCg                                                                <  1:2551099/93‑1 (MQ=255)

                          ggCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGt                                                               >  1:5276226/1‑93 (MQ=255)

                             aaGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGc                                                            >  2:5884797/1‑93 (MQ=255)

                              aGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGcc                                                           <  2:1053560/93‑1 (MQ=255)

                                aaTAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCgt                                                         >  2:5462113/1‑93 (MQ=255)

                                aaTAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCgt                                                         >  2:3971962/1‑93 (MQ=255)

                                aaTAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCgg                                                         >  1:538879/1‑92 (MQ=255)

                                 aTAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCgtg                                                        >  2:5802211/1‑93 (MQ=255)

                                  tAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCgtgt                                                       >  2:3333734/1‑93 (MQ=255)

                                    gCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTta                                                     <  1:5172382/93‑1 (MQ=255)

                                    gCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTta                                                     >  2:645387/1‑93 (MQ=255)

                                      ttCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTtata                                                   <  1:2745875/93‑1 (MQ=255)

                                        ccGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGc                                                 <  1:4121317/93‑1 (MQ=255)

                                          gCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGa                                               >  2:4854771/1‑93 (MQ=255)

                                          gCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGa                                               >  2:1664640/1‑93 (MQ=255)

                                          gCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGa                                               >  2:401286/1‑93 (MQ=255)

                                            ttCGGGAATATCGCCTTTCAAAATAGCTGAAGTTAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGAtt                                             <  1:3749229/93‑1 (MQ=255)

                                              cGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTct                                           >  2:4545970/1‑93 (MQ=255)

                                               gggAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctg                                          <  2:1321861/93‑1 (MQ=255)

                                                ggAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgc                                         <  2:2425369/93‑1 (MQ=255)

                                                ggAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgc                                         <  2:1296233/93‑1 (MQ=255)

                                                ggAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgc                                         <  2:3767738/93‑1 (MQ=255)

                                                 gAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgct                                        >  1:6078872/1‑93 (MQ=255)

                                                 gAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgct                                        <  1:4238298/93‑1 (MQ=255)

                                                  aaTATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgctg                                       <  2:2294462/93‑1 (MQ=255)

                                                  aaTATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTctgctg                                       <  2:1491330/93‑1 (MQ=255)

                                                    tatCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGa                                     >  1:3679805/1‑93 (MQ=255)

                                                    tatCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGa                                     >  2:5082456/1‑93 (MQ=255)

                                                    tatCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGa                                     >  1:5828545/1‑93 (MQ=255)

                                                    tatCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGa                                     <  2:3519728/93‑1 (MQ=255)

                                                     atCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAc                                    >  1:1018652/1‑93 (MQ=255)

                                                      tCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAcc                                   <  1:2970114/93‑1 (MQ=255)

                                                      tCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAcc                                   >  2:4680241/1‑93 (MQ=255)

                                                      tCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAcc                                   <  1:3220493/93‑1 (MQ=255)

                                                      tCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAcc                                   >  1:5250059/1‑93 (MQ=255)

                                                      tCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAcc                                   >  1:5741583/1‑93 (MQ=255)

                                                       cGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCa                                  >  2:2366754/1‑93 (MQ=255)

                                                         ccTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGa                                <  1:6277575/93‑1 (MQ=255)

                                                          cTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGTGATTCTGCTGGACCAGAt                               >  1:5584353/1‑93 (MQ=255)

                                                          cTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAt                               <  2:1892277/93‑1 (MQ=255)

                                                          cTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAt                               >  2:4095214/1‑93 (MQ=255)

                                                          cTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAt                               <  1:6124917/93‑1 (MQ=255)

                                                           tttCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATg                              <  1:2630673/93‑1 (MQ=255)

                                                           tttCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATg                              >  1:2176296/1‑93 (MQ=255)

                                                            ttCAAAATAGCTGAAGATAAGGGTTCGCTGGTAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATgg                             <  2:2084475/93‑1 (MQ=255)

                                                             tCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGa                            <  2:563040/93‑1 (MQ=255)

                                                              cAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGaa                           <  2:4884336/93‑1 (MQ=255)

                                                               aaaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAc                          >  2:2674469/1‑93 (MQ=255)

                                                               aaaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAc                          <  1:4056107/93‑1 (MQ=255)

                                                               aaaaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAc                          <  2:4484405/93‑1 (MQ=255)

                                                                 aaTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAg                        >  2:4285791/1‑93 (MQ=255)

                                                                  aTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGc                       <  1:4318757/93‑1 (MQ=255)

                                                                  aTAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGc                       <  1:1934469/93‑1 (MQ=255)

                                                                      cTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCaaaa                   <  1:1327643/93‑1 (MQ=255)

                                                                       tGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAc                  <  2:5357049/93‑1 (MQ=255)

                                                                       tGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAc                  <  1:1602775/93‑1 (MQ=255)

                                                                       tGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAc                  <  1:3204487/93‑1 (MQ=255)

                                                                       tGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAc                  >  1:33961/1‑93 (MQ=255)

                                                                         aaGATAGGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACgg                <  1:2330646/93‑1 (MQ=255)

                                                                         aaGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACgg                <  2:2741664/93‑1 (MQ=255)

                                                                          aGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGt               >  1:1172343/1‑93 (MQ=255)

                                                                          aGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGt               >  2:3028980/1‑93 (MQ=255)

                                                                           gATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACTAGATGGAACAGCAAAACGGTg              >  1:3435160/1‑93 (MQ=255)

                                                                             taggggTGCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCa            <  2:4400526/90‑1 (MQ=255)

                                                                                   ttCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAAt      <  2:2886725/93‑1 (MQ=255)

                                                                                   ttCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAAt      >  1:5300080/1‑93 (MQ=255)

                                                                                    tCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATa     >  1:4780639/1‑93 (MQ=255)

                                                                                    tCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATa     <  2:4324430/93‑1 (MQ=255)

                                                                                    tCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATa     <  2:3822577/93‑1 (MQ=255)

                                                                                       cgGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATaaaa  >  2:6026871/1‑93 (MQ=255)

                                                                                       cgGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATaaaa  <  2:4597035/93‑1 (MQ=255)

CTGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGACAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAA  >  NC_000913/3683001‑3683180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGCTGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGACAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAACGA  >  NC_000913/3682999‑3683184

GGCTGACCCGCCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCGTTCAAAATAGCTGAAGATAAGGGTTCGCGGGC                                                                                              <  SRR4302533.3886999/94‑1 (MQ=60)

  CTGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAG                                                                                            >  SRR4302533.3232526/1‑94 (MQ=60)

  CTGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAG                                                                                            >  SRR4302533.4424043/1‑94 (MQ=60)

   TGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGA                                                                                           <  SRR4302533.5192347/94‑1 (MQ=60)

   TGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGA                                                                                           >  SRR4302533.2129668/1‑94 (MQ=60)

    taccgCGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAG                                                                                          <  SRR4302533.3826216/89‑1 (MQ=60)

     ACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGC                                                                                         <  SRR4302533.156178/94‑1 (MQ=60)

      CCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCG                                                                                        >  SRR4302533.2905741/1‑94 (MQ=60)

      CCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCG                                                                                        >  SRR4302533.53855/1‑94 (MQ=60)

       CACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGA                                                                                       <  SRR4302533.4556271/94‑1 (MQ=60)

       CACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGA                                                                                       >  SRR4302533.4507854/1‑94 (MQ=60)

         CGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGC                                                                                     <  SRR4302533.464810/94‑1 (MQ=60)

          GCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCA                                                                                    <  SRR4302533.5268492/94‑1 (MQ=60)

           CCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAA                                                                                   >  SRR4302533.5668774/1‑94 (MQ=60)

           CCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAA                                                                                   >  SRR4302533.1545708/1‑94 (MQ=60)

            CTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAAT                                                                                  <  SRR4302533.243377/94‑1 (MQ=60)

             TGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATG                                                                                 <  SRR4302533.444937/94‑1 (MQ=60)

              GCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGC                                                                                <  SRR4302533.1581887/94‑1 (MQ=60)

              GCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGC                                                                                >  SRR4302533.4695516/1‑94 (MQ=60)

               CCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGCTCGCCGGCAGCGCGAGCAATGCT                                                                               >  SRR4302533.5676094/1‑94 (MQ=60)

                CGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTT                                                                              >  SRR4302533.1510205/1‑94 (MQ=60)

                CGCTTTAATGCTGGCAAGAATAGCTCCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTT                                                                              <  SRR4302533.5756486/94‑1 (MQ=60)

                 GGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTT                                                                             <  SRR4302533.3275298/94‑1 (MQ=60)

                 GGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTT                                                                             >  SRR4302533.4986488/1‑94 (MQ=60)

                   TTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCC                                                                           <  SRR4302533.1141605/94‑1 (MQ=60)

                   TTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCC                                                                           <  SRR4302533.4562385/94‑1 (MQ=60)

                   TTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCC                                                                           <  SRR4302533.3994475/94‑1 (MQ=60)

                    TTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGGTAAGGGTTGGCGGGCAGAGCGTGCACTGCTTTCCG                                                                          >  SRR4302533.4223718/1‑94 (MQ=60)

                    TTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCA                                                                          <  SRR4302533.207964/94‑1 (MQ=60)

                    TTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCA                                                                          <  SRR4302533.850572/94‑1 (MQ=60)

                     TAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAG                                                                         <  SRR4302533.861445/94‑1 (MQ=60)

                     TAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAG                                                                         >  SRR4302533.27149/1‑94 (MQ=60)

                      AATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGCGCGAGCAATGCTTTCCAGT                                                                        >  SRR4302533.4208901/1‑94 (MQ=60)

                      AATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGT                                                                        >  SRR4302533.4266067/1‑94 (MQ=60)

                       ATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTT                                                                       >  SRR4302533.5492202/1‑94 (MQ=60)

                         GCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGC                                                                     >  SRR4302533.3235140/1‑94 (MQ=60)

                          CTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCG                                                                    <  SRR4302533.3941363/94‑1 (MQ=60)

                          CTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCG                                                                    >  SRR4302533.5296119/1‑94 (MQ=60)

                           TGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGT                                                                   >  SRR4302533.4115437/1‑94 (MQ=60)

                           TGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGT                                                                   >  SRR4302533.5307859/1‑94 (MQ=60)

                           TGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGT                                                                   <  SRR4302533.2566800/94‑1 (MQ=60)

                            GGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTA                                                                  >  SRR4302533.3838555/1‑94 (MQ=60)

                             GCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAG                                                                 >  SRR4302533.5556266/1‑94 (MQ=60)

                               AAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCC                                                               <  SRR4302533.2716212/94‑1 (MQ=60)

                                 GAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGG                                                             >  SRR4302533.542082/1‑94 (MQ=60)

                                     AGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTA                                                         <  SRR4302533.2646483/94‑1 (MQ=60)

                                      GCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTAT                                                        <  SRR4302533.5258810/94‑1 (MQ=60)

                                      GCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTAT                                                        >  SRR4302533.3866306/1‑94 (MQ=60)

                                      GCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTAT                                                        <  SRR4302533.5203591/94‑1 (MQ=60)

                                       CTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATA                                                       <  SRR4302533.491832/94‑1 (MQ=60)

                                       CTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATA                                                       <  SRR4302533.5768630/94‑1 (MQ=60)

                                        TTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAG                                                      <  SRR4302533.2762710/94‑1 (MQ=60)

                                         TCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGC                                                     <  SRR4302533.5318670/94‑1 (MQ=60)

                                          CCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCG                                                    >  SRR4302533.6251430/1‑94 (MQ=60)

                                          CCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCG                                                    <  SRR4302533.4658334/94‑1 (MQ=60)

                                          CCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCG                                                    <  SRR4302533.4146340/94‑1 (MQ=60)

                                          CCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCG                                                    <  SRR4302533.4146339/94‑1 (MQ=60)

                                            GCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGAT                                                  >  SRR4302533.5444777/1‑94 (MQ=60)

                                              TTCGGGAATATCGCCTTTCAAAATAGCTGAAGTTAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTC                                                <  SRR4302533.3772213/94‑1 (MQ=60)

                                              TTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTC                                                <  SRR4302533.6138075/94‑1 (MQ=60)

                                               TCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCT                                               <  SRR4302533.5495021/94‑1 (MQ=60)

                                                 GGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGC                                             >  SRR4302533.2277092/1‑94 (MQ=60)

                                                  GGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCT                                            >  SRR4302533.1176678/1‑94 (MQ=60)

                                                  GGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCT                                            >  SRR4302533.6115638/1‑94 (MQ=60)

                                                  GGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCT                                            <  SRR4302533.5369414/94‑1 (MQ=60)

                                                   GAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTG                                           <  SRR4302533.4263896/94‑1 (MQ=60)

                                                    AATATCGCCTTTCAAAATAGCTGAAGATAAGGGTGCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGG                                          <  SRR4302533.2203293/94‑1 (MQ=60)

                                                     ATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGA                                         >  SRR4302533.3702421/1‑94 (MQ=60)

                                                     ATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGA                                         >  SRR4302533.5863763/1‑94 (MQ=60)

                                                     ATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGA                                         >  SRR4302533.4319058/1‑94 (MQ=60)

                                                     ATATAGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGA                                         <  SRR4302533.178850/94‑1 (MQ=60)

                                                      TATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAC                                        >  SRR4302533.1024641/1‑94 (MQ=60)

                                                      TATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGAC                                        <  SRR4302533.3157354/94‑1 (MQ=60)

                                                       ATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACC                                       >  SRR4302533.5776231/1‑94 (MQ=60)

                                                       ATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACC                                       >  SRR4302533.5281611/1‑94 (MQ=60)

                                                       ATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACC                                       >  SRR4302533.6131912/1‑94 (MQ=60)

                                                        TCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCA                                      <  SRR4302533.2988273/94‑1 (MQ=60)

                                                        TCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCA                                      <  SRR4302533.3483209/94‑1 (MQ=60)

                                                        TCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCA                                      <  SRR4302533.3240352/94‑1 (MQ=60)

                                                         CGCGTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAG                                     <  SRR4302533.5861154/94‑1 (MQ=60)

                                                         CGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAG                                     >  SRR4302533.380892/1‑94 (MQ=60)

                                                           CCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGTGATTCTGCTGGACCAGAT                                   >  SRR4302533.5618094/1‑94 (MQ=60)

                                                           CCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAT                                   >  SRR4302533.437369/1‑94 (MQ=60)

                                                           CCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGAT                                   <  SRR4302533.6315056/94‑1 (MQ=60)

                                                            CTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATG                                  >  SRR4302533.2189711/1‑94 (MQ=60)

                                                            CTTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATG                                  <  SRR4302533.6161835/94‑1 (MQ=60)

                                                             TTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGG                                 <  SRR4302533.1685389/94‑1 (MQ=60)

                                                             TTTCAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGG                                 <  SRR4302533.2646838/94‑1 (MQ=60)

                                                                CAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAC                              <  SRR4302533.1970446/94‑1 (MQ=60)

                                                                CAAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAAC                              <  SRR4302533.1534727/94‑1 (MQ=60)

                                                                 AAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACA                             <  SRR4302533.5807739/94‑1 (MQ=60)

                                                                 AAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACA                             <  SRR4302533.4080800/94‑1 (MQ=60)

                                                                 AAAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACA                             >  SRR4302533.4362648/1‑94 (MQ=60)

                                                                  AAATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAG                            >  SRR4302533.6185117/1‑94 (MQ=60)

                                                                   AATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGC                           <  SRR4302533.1137330/94‑1 (MQ=60)

                                                                   AATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGC                           <  SRR4302533.5331400/94‑1 (MQ=60)

                                                                    ATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCA                          >  SRR4302533.944737/1‑94 (MQ=60)

                                                                    ATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCA                          <  SRR4302533.4344770/94‑1 (MQ=60)

                                                                    ATAGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCA                          <  SRR4302533.1946271/94‑1 (MQ=60)

                                                                      AGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAA                        >  SRR4302533.1348584/1‑94 (MQ=60)

                                                                      AGCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAA                        <  SRR4302533.4262835/94‑1 (MQ=60)

                                                                       GCTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAA                       <  SRR4302533.1148686/94‑1 (MQ=60)

                                                                        CTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAC                      >  SRR4302533.34191/1‑94 (MQ=60)

                                                                        CTGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAAC                      <  SRR4302533.1335611/94‑1 (MQ=60)

                                                                         TGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACG                     <  SRR4302533.3224213/94‑1 (MQ=60)

                                                                         TGAAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACG                     <  SRR4302533.1612481/94‑1 (MQ=60)

                                                                           AAGATAGGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGT                   <  SRR4302533.2345076/94‑1 (MQ=60)

                                                                           AAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGT                   >  SRR4302533.1179380/1‑94 (MQ=60)

                                                                           AAGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGT                   <  SRR4302533.3628406/94‑1 (MQ=60)

                                                                            AGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACTAGATGGAACAGCAAAACGGTG                  >  SRR4302533.3456380/1‑94 (MQ=60)

                                                                            AGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTG                  <  SRR4302533.37398/94‑1 (MQ=60)

                                                                            AGATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTG                  >  SRR4302533.2782068/1‑94 (MQ=60)

                                                                              ATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCA                >  SRR4302533.674429/1‑94 (MQ=60)

                                                                              ATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCA                >  SRR4302533.332836/1‑94 (MQ=60)

                                                                              ATAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCA                >  SRR4302533.5002758/1‑94 (MQ=60)

                                                                               TAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAA               >  SRR4302533.2528448/1‑94 (MQ=60)

                                                                               TAAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAA               <  SRR4302533.6006710/94‑1 (MQ=60)

                                                                                AAGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAA              >  SRR4302533.2049863/1‑94 (MQ=60)

                                                                                 AGGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAA             >  SRR4302533.1286000/1‑94 (MQ=60)

                                                                                  GGGTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAA            >  SRR4302533.3720854/1‑94 (MQ=60)

                                                                                    GTTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAAT          >  SRR4302533.5331830/1‑94 (MQ=60)

                                                                                     TTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATA         <  SRR4302533.343039/94‑1 (MQ=60)

                                                                                     TTCGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATA         >  SRR4302533.4809603/1‑94 (MQ=60)

                                                                                       CGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAA       <  SRR4302533.1349753/94‑1 (MQ=60)

                                                                                       CGCGGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAA       <  SRR4302533.4211015/94‑1 (MQ=60)

                                                                                          GGGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAAC    >  SRR4302533.1025094/1‑94 (MQ=60)

                                                                                           GGCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAACG   <  SRR4302533.1002773/94‑1 (MQ=60)

                                                                                            GCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAACGA  <  SRR4302533.6029230/94‑1 (MQ=60)

                                                                                            GCAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAACGA  <  SRR4302533.1493140/94‑1 (MQ=60)

GGCTGACCACGCCTGCCGGTTTAATGCTGGCAAGAATAGCTTCCGCTTCGGGAATATCGCCTTTCAAAATAGCTGAAGATAAGGGTTCGCGGACAGAGCGAGCAATGCTTTCCAGTTGCGTAGCCGTGTTATAGCGATTCTGCTGGACCAGATGGAACAGCAAAACGGTGCAAAAAATAAAAACGA  >  NC_000913/3682999‑3683184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`