Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,786,097	A→G	M124V (ATG→GTG)	b3614 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,786,097	0	A	G	100.0%	927.0 / NA	284	M124V (ATG→GTG)	b3614	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (131/153); total (131/153)

Only 100 of 292 total aligned reads displayed.

CTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA  >  NC_000913/3786007‑3786186

ctacgcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTg                                                                                         <  1:2799983/93‑1 (MQ=255)

ctacgcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTg                                                                                         <  2:4034416/93‑1 (MQ=255)

 tacgcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTgg                                                                                        <  2:3224486/93‑1 (MQ=255)

  acgcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTggg                                                                                       >  2:4437201/1‑93 (MQ=255)

   cgcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgc                                                                                      >  2:5968844/1‑93 (MQ=255)

    gcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgca                                                                                     >  2:1722001/1‑93 (MQ=255)

    gcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgca                                                                                     <  1:5950437/93‑1 (MQ=255)

    gcCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgca                                                                                     <  2:1462203/93‑1 (MQ=255)

     cccGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgcag                                                                                    >  1:4426081/1‑93 (MQ=255)

      ccGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgcagc                                                                                   >  1:2731681/1‑93 (MQ=255)

      ccGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgcagc                                                                                   >  2:3312179/1‑93 (MQ=255)

       cGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgcagca                                                                                  >  2:64789/1‑93 (MQ=255)

       cGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGgcagca                                                                                  >  1:1524178/1‑93 (MQ=255)

        ggAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCGCGTGGGCAGCaa                                                                                 <  2:4905349/93‑1 (MQ=255)

        ggAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCaa                                                                                 <  2:2372942/93‑1 (MQ=255)

        ggAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCaa                                                                                 <  1:3041256/93‑1 (MQ=255)

        ggAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCaa                                                                                 <  2:6208101/93‑1 (MQ=255)

         gagaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAg                                                                                <  1:838425/93‑1 (MQ=255)

         gagaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAg                                                                                >  1:1963551/1‑93 (MQ=255)

         gagaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAg                                                                                >  2:2431127/1‑93 (MQ=255)

          agaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGa                                                                               <  1:1926462/93‑1 (MQ=255)

          agaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGa                                                                               <  1:3401522/93‑1 (MQ=255)

           gaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAt                                                                              <  2:1020957/93‑1 (MQ=255)

           gaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAt                                                                              >  1:5335957/1‑93 (MQ=255)

           gaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAt                                                                              >  1:5430870/1‑93 (MQ=255)

           gaTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAt                                                                              >  1:4159925/1‑93 (MQ=255)

            aTGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATg                                                                             <  1:3251579/93‑1 (MQ=255)

              gAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGAc                                                                           >  2:4549715/1‑93 (MQ=255)

                gcagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACct                                                                         <  1:56776/93‑1 (MQ=255)

                gcagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACct                                                                         <  1:5828714/93‑1 (MQ=255)

                gcagcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACct                                                                         >  2:4056394/1‑93 (MQ=255)

                  agcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACctct                                                                       <  1:5205271/93‑1 (MQ=255)

                   gcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTa                                                                      >  2:2553888/1‑93 (MQ=255)

                   gcGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTa                                                                      >  2:34676/1‑93 (MQ=255)

                     gacgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAc                                                                    >  2:3800801/1‑93 (MQ=255)

                     gacgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAc                                                                    <  1:5091124/93‑1 (MQ=255)

                     gacgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAc                                                                    >  1:5581794/1‑93 (MQ=255)

                      acgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAcc                                                                   >  2:2077065/1‑93 (MQ=255)

                       cgaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCt                                                                  <  1:3211902/93‑1 (MQ=255)

                        gaAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTg                                                                 >  1:2585991/1‑93 (MQ=255)

                               aGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTa                                                          <  1:3291507/93‑1 (MQ=255)

                               aGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTa                                                          <  1:2113863/93‑1 (MQ=255)

                               aGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTa                                                          <  2:4169180/93‑1 (MQ=255)

                                 cgcATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATg                                                        <  2:2183181/93‑1 (MQ=255)

                                  gcATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGc                                                       >  2:5487678/1‑93 (MQ=255)

                                  gcATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGc                                                       <  1:1079538/93‑1 (MQ=255)

                                    attattCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAg                                                     >  1:1207900/1‑93 (MQ=255)

                                    attattCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAg                                                     >  2:3364580/1‑93 (MQ=255)

                                     ttattCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGa                                                    >  1:2350533/1‑93 (MQ=255)

                                       attCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGaaa                                                  <  1:1336573/93‑1 (MQ=255)

                                        ttCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAg                                                 >  2:3667846/1‑93 (MQ=255)

                                          cGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTg                                               >  1:2541163/1‑93 (MQ=255)

                                           gTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGa                                              >  1:4079482/1‑93 (MQ=255)

                                              gTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGc                                           <  1:1177278/93‑1 (MQ=255)

                                              gTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGc                                           >  2:5382243/1‑93 (MQ=255)

                                               tGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCa                                          <  1:2986735/93‑1 (MQ=255)

                                               tGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCa                                          <  1:2274312/93‑1 (MQ=255)

                                                gCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAg                                         <  1:2675358/93‑1 (MQ=255)

                                                gCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAg                                         <  2:1821633/93‑1 (MQ=255)

                                                 cGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAgg                                        <  1:3081687/93‑1 (MQ=255)

                                                  ggTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGgc                                       <  1:5751675/93‑1 (MQ=255)

                                                   gTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGgcg                                      >  1:1826580/1‑93 (MQ=255)

                                                    tCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGgcgc                                     <  2:2397234/93‑1 (MQ=255)

                                                    tCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGgcgc                                     >  2:3009760/1‑93 (MQ=255)

                                                     cAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAGCCTGTTTGGTATGCAGAAAGTGATGCAGGCGCt                                    <  1:3462473/93‑1 (MQ=255)

                                                     cAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCt                                    >  1:1701928/1‑93 (MQ=255)

                                                      aaTAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTg                                   >  1:4974096/1‑93 (MQ=255)

                                                      aaTAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTg                                   <  2:2959255/93‑1 (MQ=255)

                                                      aaTAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTg                                   <  1:637208/93‑1 (MQ=255)

                                                       aTAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTgg                                  <  1:3639473/93‑1 (MQ=255)

                                                       aTAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTgg                                  <  2:1321298/93‑1 (MQ=255)

                                                        tAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGa                                 >  2:4626724/1‑93 (MQ=255)

                                                        tAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGa                                 <  2:1614003/93‑1 (MQ=255)

                                                           cGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGAAGCg                              <  2:1923766/93‑1 (MQ=255)

                                                            gTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGt                             <  2:5029753/93‑1 (MQ=255)

                                                               cccTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTAc                          <  1:6063121/93‑1 (MQ=255)

                                                                ccTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACa                         <  1:1027015/93‑1 (MQ=255)

                                                                ccTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACa                         >  1:3749107/1‑93 (MQ=255)

                                                                ccTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACa                         <  2:5581824/93‑1 (MQ=255)

                                                                ccTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACa                         <  1:1645837/93‑1 (MQ=255)

                                                                 cTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACaa                        >  2:2798808/1‑93 (MQ=255)

                                                                    tGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCt                     <  2:5616071/93‑1 (MQ=255)

                                                                     gCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCtt                    >  2:1129278/1‑93 (MQ=255)

                                                                      ccGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCttt                   >  1:4537103/1‑93 (MQ=255)

                                                                        gTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTAc                 >  2:585802/1‑93 (MQ=255)

                                                                         tGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACt                >  2:3056447/1‑93 (MQ=255)

                                                                            ggATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTttccttcc             <  1:1394248/93‑1 (MQ=255)

                                                                            ggATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTcc             >  1:4586704/1‑93 (MQ=255)

                                                                             gATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCt            <  2:3934675/93‑1 (MQ=255)

                                                                             gATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCt            <  2:5123921/93‑1 (MQ=255)

                                                                              aTCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTc           >  2:93552/1‑93 (MQ=255)

                                                                              aTCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTc           <  2:3128021/93‑1 (MQ=255)

                                                                                  acaacCACGTGGGCAGCAAGCTTGCCTCTAACCTGTTTGGTATGCAGCAAGAGATGCAGGCGCTTGAGCGTTAGAATCTTTACTTCCTCGACa       >  2:2890984/1‑93 (MQ=255)

                                                                                  acaacCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACa       >  2:2114325/1‑93 (MQ=255)

                                                                                  acaacCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACa       <  2:5918355/93‑1 (MQ=255)

                                                                                      ccACGTGGGCAGCAATATGACCTCTAACCTGTATGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGt   <  1:4781101/93‑1 (MQ=255)

                                                                                      ccACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGt   <  1:3998832/93‑1 (MQ=255)

                                                                                      ccACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGt   <  1:2414146/93‑1 (MQ=255)

                                                                                       cacgTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTa  >  2:5780134/1‑93 (MQ=255)

                                                                                       cacgTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTa  >  2:3582137/1‑93 (MQ=255)

CTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA  >  NC_000913/3786007‑3786186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACCA  >  NC_000913/3786005‑3786190

CGCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGT                                                                                              <  SRR4302533.6209510/94‑1 (MQ=60)

 GCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTG                                                                                             >  SRR4302533.559124/1‑94 (MQ=60)

 GCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTG                                                                                             <  SRR4302533.2806422/94‑1 (MQ=60)

  CTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGG                                                                                            <  SRR4302533.2817203/94‑1 (MQ=60)

  CTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGG                                                                                            >  SRR4302533.5326541/1‑94 (MQ=60)

    ACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGC                                                                                          <  SRR4302533.2793611/94‑1 (MQ=60)

     CGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCA                                                                                         >  SRR4302533.5277766/1‑94 (MQ=60)

     CGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCA                                                                                         >  SRR4302533.1439211/1‑94 (MQ=60)

     AGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCA                                                                                         <  SRR4302533.3609321/94‑1 (MQ=60)

      GCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAG                                                                                        <  SRR4302533.2093201/94‑1 (MQ=60)

      GCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAG                                                                                        >  SRR4302533.4452834/1‑94 (MQ=60)

      GCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAG                                                                                        <  SRR4302533.5986425/94‑1 (MQ=60)

       CCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGC                                                                                       >  SRR4302533.2748443/1‑94 (MQ=60)

       CCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGC                                                                                       <  SRR4302533.3067694/94‑1 (MQ=60)

        CCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCA                                                                                      <  SRR4302533.4002697/94‑1 (MQ=60)

        CCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCA                                                                                      >  SRR4302533.1533354/1‑94 (MQ=60)

        CCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCA                                                                                      >  SRR4302533.1390333/1‑94 (MQ=60)

          GGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAG                                                                                    <  SRR4302533.2582989/94‑1 (MQ=60)

          GGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAG                                                                                    >  SRR4302533.2231581/1‑94 (MQ=60)

          GGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAG                                                                                    >  SRR4302533.3853454/1‑94 (MQ=60)

          GGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAG                                                                                    >  SRR4302533.1975538/1‑94 (MQ=60)

          GGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAG                                                                                    <  SRR4302533.3059870/94‑1 (MQ=60)

           GAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGA                                                                                   <  SRR4302533.843336/94‑1 (MQ=60)

            AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                                  <  SRR4302533.1938215/94‑1 (MQ=60)

            AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                                  >  SRR4302533.5463577/1‑94 (MQ=60)

            AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                                  >  SRR4302533.5367941/1‑94 (MQ=60)

            AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                                  <  SRR4302533.940431/94‑1 (MQ=60)

            AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                                  <  SRR4302533.3422527/94‑1 (MQ=60)

            AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                                  >  SRR4302533.3518206/1‑94 (MQ=60)

            AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                                  <  SRR4302533.4492678/94‑1 (MQ=60)

            AGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGAT                                                                                  >  SRR4302533.4185137/1‑94 (MQ=60)

             GATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATG                                                                                 >  SRR4302533.3283295/1‑94 (MQ=60)

             GATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATG                                                                                 >  SRR4302533.2636653/1‑94 (MQ=60)

             GATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATG                                                                                 <  SRR4302533.5516857/94‑1 (MQ=60)

             GATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATG                                                                                 >  SRR4302533.1123678/1‑94 (MQ=60)

              ATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGA                                                                                <  SRR4302533.3271628/94‑1 (MQ=60)

              ATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGA                                                                                <  SRR4302533.3023294/94‑1 (MQ=60)

              ATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGACGA                                                                                <  SRR4302533.5867362/94‑1 (MQ=60)

                GAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACC                                                                              <  SRR4302533.5747525/94‑1 (MQ=60)

                  GCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTC                                                                            <  SRR4302533.57152/94‑1 (MQ=60)

                  GCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTC                                                                            <  SRR4302533.5863932/94‑1 (MQ=60)

                   CAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCT                                                                           <  SRR4302533.3052970/94‑1 (MQ=60)

                   CAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCT                                                                           >  SRR4302533.3063186/1‑94 (MQ=60)

                    AGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTA                                                                          <  SRR4302533.1375132/94‑1 (MQ=60)

                    AGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTA                                                                          >  SRR4302533.4680985/1‑94 (MQ=60)

                    AGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTA                                                                          <  SRR4302533.5236637/94‑1 (MQ=60)

                    AGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAACAAGATGACCTCTA                                                                          >  SRR4302533.3680550/1‑94 (MQ=60)

                     GCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAA                                                                         <  SRR4302533.347213/94‑1 (MQ=60)

                     GCGACGAAATTGAGCGCATTATGCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAA                                                                         <  SRR4302533.3128181/94‑1 (MQ=60)

                      CGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAAC                                                                        >  SRR4302533.5615521/1‑94 (MQ=60)

                       GACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACC                                                                       >  SRR4302533.4597415/1‑94 (MQ=60)

                       GACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACC                                                                       <  SRR4302533.5121883/94‑1 (MQ=60)

                        ACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCT                                                                      <  SRR4302533.1241670/94‑1 (MQ=60)

                         CGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTG                                                                     >  SRR4302533.2601890/1‑94 (MQ=60)

                         CGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTG                                                                     <  SRR4302533.3231686/94‑1 (MQ=60)

                          GAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGT                                                                    >  SRR4302533.1541096/1‑94 (MQ=60)

                          GAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGT                                                                    >  SRR4302533.2576752/1‑94 (MQ=60)

                           AAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTT                                                                   <  SRR4302533.3249963/94‑1 (MQ=60)

                           AAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTT                                                                   <  SRR4302533.133054/94‑1 (MQ=60)

                           AAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTT                                                                   <  SRR4302533.1209644/94‑1 (MQ=60)

                             ATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTG                                                                 >  SRR4302533.2046796/1‑94 (MQ=60)

                             ATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTG                                                                 <  SRR4302533.3708750/94‑1 (MQ=60)

                                GAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTA                                                              <  SRR4302533.5426952/94‑1 (MQ=60)

                                 AGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTAT                                                             <  SRR4302533.2126898/94‑1 (MQ=60)

                                 AGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTAT                                                             >  SRR4302533.2975270/1‑94 (MQ=60)

                                 AGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTAT                                                             <  SRR4302533.3311823/94‑1 (MQ=60)

                                    GCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCA                                                          <  SRR4302533.1085900/94‑1 (MQ=60)

                                     CATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAG                                                         >  SRR4302533.1215153/1‑94 (MQ=60)

                                     CATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAG                                                         >  SRR4302533.4143517/1‑94 (MQ=60)

                                     CATTATTCGTAGTGCGCTCAATAACGTGCCCTATTCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAG                                                         <  SRR4302533.1812347/94‑1 (MQ=60)

                                      ATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGA                                                        >  SRR4302533.2322624/1‑94 (MQ=60)

                                      ATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGA                                                        >  SRR4302533.2365074/1‑94 (MQ=60)

                                       TTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAA                                                       <  SRR4302533.2635067/94‑1 (MQ=60)

                                         ATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAG                                                     <  SRR4302533.1344593/94‑1 (MQ=60)

                                          TTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGT                                                    >  SRR4302533.80297/1‑94 (MQ=60)

                                          TTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGT                                                    >  SRR4302533.1213194/1‑94 (MQ=60)

                                           TCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTG                                                   >  SRR4302533.2556807/1‑94 (MQ=60)

                                            CGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGA                                                  >  SRR4302533.4104316/1‑94 (MQ=60)

                                            CGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGA                                                  <  SRR4302533.4635774/94‑1 (MQ=60)

                                            CGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGA                                                  <  SRR4302533.4256227/94‑1 (MQ=60)

                                              TAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATG                                                >  SRR4302533.6144332/1‑94 (MQ=60)

                                              TAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATG                                                >  SRR4302533.1955232/1‑94 (MQ=60)

                                               AGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGC                                               <  SRR4302533.3469691/94‑1 (MQ=60)

                                               AGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGC                                               <  SRR4302533.722431/94‑1 (MQ=60)

                                                GTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCA                                              <  SRR4302533.6203624/94‑1 (MQ=60)

                                                GTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCA                                              <  SRR4302533.1184343/94‑1 (MQ=60)

                                                 TGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAG                                             <  SRR4302533.2288391/94‑1 (MQ=60)

                                                 TGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAG                                             <  SRR4302533.3005007/94‑1 (MQ=60)

                                                 TGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAG                                             <  SRR4302533.5832009/94‑1 (MQ=60)

                                                  GCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGG                                            <  SRR4302533.2691768/94‑1 (MQ=60)

                                                  GCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGG                                            <  SRR4302533.4117932/94‑1 (MQ=60)

                                                  GCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGG                                            <  SRR4302533.5208527/94‑1 (MQ=60)

                                                   CGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAGCCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGC                                           <  SRR4302533.295303/94‑1 (MQ=60)

                                                   CGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGC                                           <  SRR4302533.2701792/94‑1 (MQ=60)

                                                   CGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGC                                           <  SRR4302533.3100594/94‑1 (MQ=60)

                                                    GGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCG                                          <  SRR4302533.5786374/94‑1 (MQ=60)

                                                    GGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCG                                          >  SRR4302533.1837736/1‑94 (MQ=60)

                                                    GGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCG                                          >  SRR4302533.5657524/1‑94 (MQ=60)

                                                     GTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGC                                         >  SRR4302533.1716598/1‑94 (MQ=60)

                                                      TCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCT                                        >  SRR4302533.1712240/1‑94 (MQ=60)

                                                       CAATAACGTGCCGTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTG                                       <  SRR4302533.253413/94‑1 (MQ=60)

                                                       CAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAGCCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTG                                       <  SRR4302533.3483847/94‑1 (MQ=60)

                                                       CAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTG                                       <  SRR4302533.5200254/94‑1 (MQ=60)

                                                       CAATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTG                                       >  SRR4302533.5004256/1‑94 (MQ=60)

                                                        AATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGG                                      <  SRR4302533.640958/94‑1 (MQ=60)

                                                         ATAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGA                                     <  SRR4302533.3661850/94‑1 (MQ=60)

                                                          TAACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAG                                    >  SRR4302533.2488005/1‑94 (MQ=60)

                                                           AACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGC                                   >  SRR4302533.1046491/1‑94 (MQ=60)

                                                           AACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGC                                   <  SRR4302533.3249190/94‑1 (MQ=60)

                                                            ACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCG                                  <  SRR4302533.2775789/94‑1 (MQ=60)

                                                            ACGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCG                                  <  SRR4302533.2413837/94‑1 (MQ=60)

                                                             CGTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGT                                 >  SRR4302533.5975452/1‑94 (MQ=60)

                                                              GTGCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTT                                >  SRR4302533.1934641/1‑94 (MQ=60)

                                                                GCCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTAC                              <  SRR4302533.1554359/94‑1 (MQ=60)

                                                                 CCCTATGCCGTGGGGATCAACACCCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACA                             <  SRR4302533.2700845/94‑1 (MQ=60)

                                                                 CCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACA                             >  SRR4302533.3772091/1‑94 (MQ=60)

                                                                 CCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACA                             <  SRR4302533.6099825/94‑1 (MQ=60)

                                                                 CCCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACA                             <  SRR4302533.5838853/94‑1 (MQ=60)

                                                                  CCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAA                            <  SRR4302533.1655801/94‑1 (MQ=60)

                                                                  CCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAA                            >  SRR4302533.6028990/1‑94 (MQ=60)

                                                                  CCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAA                            <  SRR4302533.1033046/94‑1 (MQ=60)

                                                                  CCTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAA                            >  SRR4302533.1108774/1‑94 (MQ=60)

                                                                   CTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAAT                           >  SRR4302533.4038340/1‑94 (MQ=60)

                                                                   CTATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAAT                           >  SRR4302533.2301183/1‑94 (MQ=60)

                                                                     ATGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGCTACAATCT                         >  SRR4302533.4496133/1‑94 (MQ=60)

                                                                      TGCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTT                        <  SRR4302533.1874346/94‑1 (MQ=60)

                                                                       GCCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTT                       >  SRR4302533.4564572/1‑94 (MQ=60)

                                                                        CCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTA                      >  SRR4302533.314623/1‑94 (MQ=60)

                                                                        CCGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTA                      <  SRR4302533.600602/94‑1 (MQ=60)

                                                                         CGTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTAC                     <  SRR4302533.3349707/94‑1 (MQ=60)

                                                                          GTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACT                    <  SRR4302533.166581/94‑1 (MQ=60)

                                                                          GTGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACT                    >  SRR4302533.4998180/1‑94 (MQ=60)

                                                                           TGGGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTT                   <  SRR4302533.5781672/94‑1 (MQ=60)

                                                                            GAGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTC                  <  SRR4302533.1704319/94‑1 (MQ=60)

                                                                             GGGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCC                 >  SRR4302533.4614489/1‑94 (MQ=60)

                                                                              GGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTCCTTCCT                <  SRR4302533.1402649/94‑1 (MQ=60)

                                                                              GGATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCT                <  SRR4302533.1959652/94‑1 (MQ=60)

                                                                               GATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTC               <  SRR4302533.3327313/94‑1 (MQ=60)

                                                                               GATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTC               >  SRR4302533.4097023/1‑94 (MQ=60)

                                                                                ATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCG              <  SRR4302533.1420620/94‑1 (MQ=60)

                                                                                ATCAACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCG              <  SRR4302533.4614443/94‑1 (MQ=60)

                                                                                   AACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACA           >  SRR4302533.5627343/1‑94 (MQ=60)

                                                                                   AACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACA           <  SRR4302533.241552/94‑1 (MQ=60)

                                                                                   AACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCATCGACA           >  SRR4302533.4273142/1‑94 (MQ=60)

                                                                                    ACAACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAG          >  SRR4302533.5379928/1‑94 (MQ=60)

                                                                                       ACCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGT       >  SRR4302533.5073969/1‑94 (MQ=60)

                                                                                        CCACGTGGGCAGCAATATGACCTCTAACCTGTATGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA      <  SRR4302533.4810069/94‑1 (MQ=60)

                                                                                        CCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA      <  SRR4302533.4023176/94‑1 (MQ=60)

                                                                                        CCACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTA      <  SRR4302533.2429059/94‑1 (MQ=60)

                                                                                         CACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAA     <  SRR4302533.5051846/94‑1 (MQ=60)

                                                                                          ACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAAC    >  SRR4302533.5677918/1‑94 (MQ=60)

                                                                                          ACGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAAC    >  SRR4302533.778984/1‑94 (MQ=60)

                                                                                           CGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACC   <  SRR4302533.5867533/94‑1 (MQ=60)

                                                                                           CGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACC   >  SRR4302533.3690081/1‑94 (MQ=60)

                                                                                           CGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACC   <  SRR4302533.4770688/94‑1 (MQ=60)

                                                                                           CGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACC   >  SRR4302533.2065576/1‑94 (MQ=60)

                                                                                           CGTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACC   <  SRR4302533.5656726/94‑1 (MQ=60)

                                                                                            GTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAATCA  >  SRR4302533.386543/1‑94 (MQ=60)

                                                                                            GTGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACCA  <  SRR4302533.972834/94‑1 (MQ=60)

CGCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTATTCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGCAGCAAGATGACCTCTAACCTGTTTGGTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACCA  >  NC_000913/3786005‑3786190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`