Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,858,839 C→T intergenic (+36/+137) yidL → / ← glvG putative ARAC‑type regulatory protein/putative 6‑phospho‑beta‑glucosidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,858,8390CT100.0% 917.3 / NA 247intergenic (+36/+137)yidL/glvGputative ARAC‑type regulatory protein/putative 6‑phospho‑beta‑glucosidase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (129/118);  total (129/118)

Only 100 of 252 total aligned reads displayed.

AGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGCAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTG  >  NC_000913/3858749‑3858928
                                                                                          |                                                                                         
aGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTaa                                                                                         >  1:3470787/1‑93 (MQ=255)
 gCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAAc                                                                                        >  1:5882644/1‑93 (MQ=255)
 gCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAAc                                                                                        <  1:5174410/93‑1 (MQ=255)
  ccGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACt                                                                                       >  2:4004015/1‑93 (MQ=255)
  ccGTGCTAAAGAATACGGACCAGCACCCAACGGACGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACt                                                                                       <  1:5666659/93‑1 (MQ=255)
   cGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTc                                                                                      >  2:4283576/1‑93 (MQ=255)
    gTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCa                                                                                     >  1:723019/1‑93 (MQ=255)
    gTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGACCAGTACGCTTTGTTGGCCTCCAGTAACTCa                                                                                     >  2:3073863/1‑93 (MQ=255)
     tGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCAt                                                                                    >  2:2429189/1‑93 (MQ=255)
     tGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCAt                                                                                    <  1:1163334/93‑1 (MQ=255)
      gCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAAatcatc                                                                                   >  2:3819103/1‑93 (MQ=255)
      gCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATc                                                                                   >  1:5199086/1‑93 (MQ=255)
      gCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATc                                                                                   <  2:2682967/93‑1 (MQ=255)
         aaaGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAg                                                                                >  1:5971321/1‑93 (MQ=255)
          aaGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGa                                                                               >  1:2863695/1‑93 (MQ=255)
           aGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGaa                                                                              >  2:1288371/1‑93 (MQ=255)
            gAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAAt                                                                             >  1:2711719/1‑93 (MQ=255)
               tACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGc                                                                          >  2:2929764/1‑93 (MQ=255)
                 cGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCtt                                                                        <  1:5110601/93‑1 (MQ=255)
                  ggACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCttt                                                                       <  2:5120214/93‑1 (MQ=255)
                  ggACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCttt                                                                       <  2:2274336/93‑1 (MQ=255)
                   gACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTg                                                                      <  2:5782404/93‑1 (MQ=255)
                    aCCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTgg                                                                     <  2:83536/93‑1 (MQ=255)
                     ccAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGc                                                                    >  2:4075147/1‑93 (MQ=255)
                     ccAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGc                                                                    <  2:4620965/93‑1 (MQ=255)
                       aGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGa                                                                  <  1:780835/93‑1 (MQ=255)
                       aGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGa                                                                  <  1:2559488/93‑1 (MQ=255)
                       aGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGa                                                                  >  1:2297917/1‑93 (MQ=255)
                         cACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGAcc                                                                <  1:4287126/93‑1 (MQ=255)
                           cccAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGa                                                              >  1:2384556/1‑93 (MQ=255)
                            ccAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAg                                                             <  1:4109571/93‑1 (MQ=255)
                            ccAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAg                                                             <  2:3189292/93‑1 (MQ=255)
                             cAACGGATGCCAGTCCTCACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAgg                                                            <  1:1694442/93‑1 (MQ=255)
                             cAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAgg                                                            <  2:1374058/93‑1 (MQ=255)
                                  gATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTc                                                       >  1:3161424/1‑93 (MQ=255)
                                   aTGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCg                                                      <  2:5732640/93‑1 (MQ=255)
                                   aTGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCg                                                      >  1:480024/1‑93 (MQ=255)
                                     gCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGt                                                    >  1:2048219/1‑93 (MQ=255)
                                     gCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGt                                                    <  1:1985345/93‑1 (MQ=255)
                                     gCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGt                                                    >  1:1053700/1‑93 (MQ=255)
                                      ccAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTa                                                   >  1:4462518/1‑93 (MQ=255)
                                      ccAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTa                                                   <  1:3052918/93‑1 (MQ=255)
                                      ccAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTa                                                   >  1:182179/1‑93 (MQ=255)
                                       cAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAc                                                  <  2:3563984/93‑1 (MQ=255)
                                       cAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAc                                                  <  1:2348583/93‑1 (MQ=255)
                                       cAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAc                                                  <  1:2228816/93‑1 (MQ=255)
                                        aGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAcc                                                 >  2:51685/1‑93 (MQ=255)
                                        aGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAcc                                                 <  1:2829977/93‑1 (MQ=255)
                                         gTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCg                                                >  1:1796783/1‑93 (MQ=255)
                                         gTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCg                                                >  2:1197958/1‑93 (MQ=255)
                                         gTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCg                                                >  2:5124378/1‑93 (MQ=255)
                                          tCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGt                                               <  1:363531/93‑1 (MQ=255)
                                           ccACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGtt                                              <  2:4923325/93‑1 (MQ=255)
                                             acacaATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGtttt                                            >  1:5410220/1‑93 (MQ=255)
                                             acacaATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGtttt                                            >  1:5089742/1‑93 (MQ=255)
                                             acacaATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGtttt                                            >  2:4489469/1‑93 (MQ=255)
                                             acacaATTAACGTAACTCTGGCCAGTACGCTTTGTTGCCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGtttt                                            <  1:3859665/93‑1 (MQ=255)
                                               acaATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCg                                          >  2:5383938/1‑93 (MQ=255)
                                                 aaTTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGAc                                        <  2:183180/93‑1 (MQ=255)
                                                   ttAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACac                                      >  1:4318187/1‑92 (MQ=255)
                                                      aCGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGt                                   >  2:5510951/1‑93 (MQ=255)
                                                      aCGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGt                                   >  1:5278146/1‑93 (MQ=255)
                                                       cGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTa                                  >  1:830926/1‑93 (MQ=255)
                                                       cGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTa                                  <  1:5932039/93‑1 (MQ=255)
                                                         tAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAt                                <  1:6254288/93‑1 (MQ=255)
                                                         tAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAt                                >  2:2496059/1‑93 (MQ=255)
                                                          aaCTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATc                               <  2:3377202/93‑1 (MQ=255)
                                                          aaCTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATc                               <  1:5549969/93‑1 (MQ=255)
                                                           aCTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCg                              >  2:213050/1‑93 (MQ=255)
                                                            ctctGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGc                             <  1:6232190/93‑1 (MQ=255)
                                                             tctGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGcc                            >  1:149993/1‑93 (MQ=255)
                                                              ctGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCt                           <  2:3648648/93‑1 (MQ=255)
                                                                  ccAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCca                       <  2:1089593/93‑1 (MQ=255)
                                                                  ccAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCca                       <  2:3440309/93‑1 (MQ=255)
                                                                   cAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCcac                      >  1:1116943/1‑93 (MQ=255)
                                                                   cAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCcac                      <  2:148887/93‑1 (MQ=255)
                                                                    aGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCcaca                     >  2:5215113/1‑93 (MQ=255)
                                                                    aGTACGCTATGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCcaca                     >  2:6126346/1‑93 (MQ=255)
                                                                     gTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAg                    >  1:4611933/1‑93 (MQ=255)
                                                                     gTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAg                    <  1:5260299/93‑1 (MQ=255)
                                                                      tACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAgg                   >  1:5369400/1‑93 (MQ=255)
                                                                      tACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAgg                   >  2:882070/1‑93 (MQ=255)
                                                                      tACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAgg                   >  1:6069378/1‑93 (MQ=255)
                                                                      tACGCTTTGTGGGCCTCCAGTAACTCAGCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAgg                   <  2:6055884/93‑1 (MQ=255)
                                                                        cGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTg                 >  1:1353466/1‑93 (MQ=255)
                                                                         gCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGc                <  1:338925/93‑1 (MQ=255)
                                                                            ttgttgGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGa             <  2:3686355/93‑1 (MQ=255)
                                                                               ttgGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGatat          <  2:1580173/93‑1 (MQ=255)
                                                                               ttgGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGatat          >  2:1800561/1‑93 (MQ=255)
                                                                               ttgGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGatat          <  2:648899/93‑1 (MQ=255)
                                                                                tgGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGTCAACGTAATCGCCTGCCACAGGTGCTGATATg         <  2:4948460/93‑1 (MQ=255)
                                                                                 ggCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGAGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGa        >  2:2598931/1‑93 (MQ=255)
                                                                                  gCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGaa       <  2:2774338/93‑1 (MQ=255)
                                                                                  gCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGaa       <  2:1935670/93‑1 (MQ=255)
                                                                                   ccTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAAc      <  2:4381392/93‑1 (MQ=255)
                                                                                   ccTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAAc      <  1:4022591/93‑1 (MQ=255)
                                                                                     tCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTTATATGAACGc    >  2:3878247/1‑93 (MQ=255)
                                                                                     tCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGc    >  2:1991335/1‑93 (MQ=255)
                                                                                     tCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGc    >  1:5007832/1‑93 (MQ=255)
                                                                                      ccAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCAACAGGTGCTGATATGAACGCt   >  1:3502219/1‑93 (MQ=255)
                                                                                          |                                                                                         
AGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGCAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTG  >  NC_000913/3858749‑3858928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGCAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTTCC  >  NC_000913/3858746‑3858932
                                                                                             |                                                                                             
GTCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGT                                                                                               >  SRR4302533.2097551/1‑94 (MQ=60)
GTCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGGCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGT                                                                                               >  SRR4302533.1723884/1‑94 (MQ=60)
 TCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTA                                                                                              >  SRR4302533.2067289/1‑94 (MQ=60)
  CAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAA                                                                                             >  SRR4302533.3492212/1‑94 (MQ=60)
  CAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAA                                                                                             >  SRR4302533.3542293/1‑94 (MQ=60)
  CAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGGCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAA                                                                                             >  SRR4302533.4462619/1‑94 (MQ=60)
   AGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAAC                                                                                            >  SRR4302533.5918194/1‑94 (MQ=60)
    GCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACT                                                                                           <  SRR4302533.5205666/94‑1 (MQ=60)
     CCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTC                                                                                          >  SRR4302533.5306919/1‑94 (MQ=60)
     CCGTGCTAAAGAATACGGACCAGCACCCAACGGACGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTC                                                                                          <  SRR4302533.5700891/94‑1 (MQ=60)
      CGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCA                                                                                         >  SRR4302533.727295/1‑94 (MQ=60)
       GTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCAT                                                                                        >  SRR4302533.3779060/1‑94 (MQ=60)
        TGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATC                                                                                       >  SRR4302533.5230434/1‑94 (MQ=60)
        TGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATC                                                                                       <  SRR4302533.1170312/94‑1 (MQ=60)
         GCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCC                                                                                      >  SRR4302533.2423868/1‑94 (MQ=60)
          CTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCA                                                                                     >  SRR4302533.27521/1‑94 (MQ=60)
           TAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAG                                                                                    >  SRR4302533.6007467/1‑94 (MQ=60)
            AAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGA                                                                                   >  SRR4302533.2881309/1‑94 (MQ=60)
             AAGAATACGGACCAGCACCCAACGGATGCCAGTCCGCACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAA                                                                                  <  SRR4302533.5498434/94‑1 (MQ=60)
              AGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAAT                                                                                 >  SRR4302533.2728367/1‑94 (MQ=60)
              AGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAAT                                                                                 <  SRR4302533.4784309/94‑1 (MQ=60)
                AATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAG                                                                               <  SRR4302533.5045081/94‑1 (MQ=60)
                AATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAG                                                                               <  SRR4302533.5154676/94‑1 (MQ=60)
                 ATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGC                                                                              >  SRR4302533.4326816/1‑94 (MQ=60)
                    CGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTT                                                                           <  SRR4302533.5141488/94‑1 (MQ=60)
                     GGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTG                                                                          <  SRR4302533.4092196/94‑1 (MQ=60)
                     GGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTG                                                                          <  SRR4302533.3066118/94‑1 (MQ=60)
                     GGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTG                                                                          <  SRR4302533.2260407/94‑1 (MQ=60)
                      GACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGG                                                                         <  SRR4302533.2117344/94‑1 (MQ=60)
                       ACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGC                                                                        <  SRR4302533.5380375/94‑1 (MQ=60)
                       ACCAGCACCCAACGGATGCCAGTCCACACAAGTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGC                                                                        <  SRR4302533.743714/94‑1 (MQ=60)
                        CCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCG                                                                       >  SRR4302533.1590255/1‑94 (MQ=60)
                        CCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCG                                                                       <  SRR4302533.2952008/94‑1 (MQ=60)
                         CAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGA                                                                      >  SRR4302533.2312170/1‑94 (MQ=60)
                          AGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGAC                                                                     <  SRR4302533.2575255/94‑1 (MQ=60)
                          AGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGAC                                                                     <  SRR4302533.785435/94‑1 (MQ=60)
                           GCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACC                                                                    <  SRR4302533.5500698/94‑1 (MQ=60)
                            CACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCG                                                                   >  SRR4302533.4548534/1‑94 (MQ=60)
                            CACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCG                                                                   <  SRR4302533.4312905/94‑1 (MQ=60)
                             ACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTTGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGA                                                                  >  SRR4302533.5734758/1‑94 (MQ=60)
                             ACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGA                                                                  >  SRR4302533.2399294/1‑94 (MQ=60)
                               CCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGG                                                                <  SRR4302533.4134555/94‑1 (MQ=60)
                                CAACGGATGCCAGTCCTCACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGC                                                               <  SRR4302533.1704707/94‑1 (MQ=60)
                                CAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGC                                                               >  SRR4302533.5376157/1‑94 (MQ=60)
                                CAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGC                                                               >  SRR4302533.2039527/1‑94 (MQ=60)
                                 AACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCG                                                              >  SRR4302533.5988777/1‑94 (MQ=60)
                                    GGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTGCGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTC                                                           <  SRR4302533.1146569/94‑1 (MQ=60)
                                    GGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTC                                                           >  SRR4302533.5584458/1‑94 (MQ=60)
                                    GGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTC                                                           >  SRR4302533.3180878/1‑94 (MQ=60)
                                     GATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCG                                                          <  SRR4302533.1145012/94‑1 (MQ=60)
                                     GATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCG                                                          >  SRR4302533.482892/1‑94 (MQ=60)
                                      ATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGG                                                         <  SRR4302533.1114876/94‑1 (MQ=60)
                                      ATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGG                                                         >  SRR4302533.3496548/1‑94 (MQ=60)
                                       TGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGT                                                        >  SRR4302533.2060847/1‑94 (MQ=60)
                                       TGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGT                                                        >  SRR4302533.1059906/1‑94 (MQ=60)
                                       TGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGATTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGT                                                        >  SRR4302533.6273776/1‑94 (MQ=60)
                                        GCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTA                                                       >  SRR4302533.4489510/1‑94 (MQ=60)
                                        GCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTA                                                       <  SRR4302533.1997491/94‑1 (MQ=60)
                                        GCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTA                                                       >  SRR4302533.183311/1‑94 (MQ=60)
                                         CCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAC                                                      <  SRR4302533.3911217/94‑1 (MQ=60)
                                         CCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTAC                                                      <  SRR4302533.3071617/94‑1 (MQ=60)
                                          CAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACC                                                     <  SRR4302533.2363115/94‑1 (MQ=60)
                                          CAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACC                                                     <  SRR4302533.650762/94‑1 (MQ=60)
                                          CAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACC                                                     <  SRR4302533.4770594/94‑1 (MQ=60)
                                          CAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACC                                                     <  SRR4302533.2242572/94‑1 (MQ=60)
                                           AGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCG                                                    <  SRR4302533.2847391/94‑1 (MQ=60)
                                           AGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCG                                                    <  SRR4302533.5116031/94‑1 (MQ=60)
                                           AGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCG                                                    >  SRR4302533.5217942/1‑94 (MQ=60)
                                           AGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCG                                                    >  SRR4302533.1807717/1‑94 (MQ=60)
                                           AGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCG                                                    >  SRR4302533.4174032/1‑94 (MQ=60)
                                            GTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGT                                                   >  SRR4302533.1873020/1‑94 (MQ=60)
                                             TCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTT                                                  <  SRR4302533.4392920/94‑1 (MQ=60)
                                             TCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTT                                                  <  SRR4302533.365740/94‑1 (MQ=60)
                                             TCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTT                                                  >  SRR4302533.1386333/1‑94 (MQ=60)
                                               CACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTT                                                >  SRR4302533.5120495/1‑94 (MQ=60)
                                               CACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTT                                                >  SRR4302533.5442747/1‑94 (MQ=60)
                                               CACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTT                                                <  SRR4302533.5016517/94‑1 (MQ=60)
                                               CACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTT                                                >  SRR4302533.1296188/1‑94 (MQ=60)
                                               CACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTT                                                <  SRR4302533.2488243/94‑1 (MQ=60)
                                                ACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTG                                               >  SRR4302533.663147/1‑94 (MQ=60)
                                                ACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGCCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTC                                               <  SRR4302533.3883229/94‑1 (MQ=60)
                                                 CACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCG                                              <  SRR4302533.1454411/94‑1 (MQ=60)
                                                  ACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGA                                             <  SRR4302533.79612/94‑1 (MQ=60)
                                                     ATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAC                                          >  SRR4302533.4344194/1‑94 (MQ=60)
                                                     ATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAA                                          >  SRR4302533.5959761/1‑94 (MQ=60)
                                                        AACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGT                                       >  SRR4302533.5309786/1‑94 (MQ=60)
                                                         ACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTA                                      >  SRR4302533.835796/1‑94 (MQ=60)
                                                          CGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAA                                     <  SRR4302533.5967900/94‑1 (MQ=60)
                                                           GTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAT                                    >  SRR4302533.183182/1‑94 (MQ=60)
                                                           GTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAAT                                    >  SRR4302533.2814778/1‑94 (MQ=60)
                                                            TAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATC                                   <  SRR4302533.6291694/94‑1 (MQ=60)
                                                            TAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATC                                   <  SRR4302533.5745044/94‑1 (MQ=60)
                                                            TAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATC                                   <  SRR4302533.5176160/94‑1 (MQ=60)
                                                             AACTCTGGCCAGTACGCTTTGTTTGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCG                                  <  SRR4302533.5968207/94‑1 (MQ=60)
                                                             AACTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCG                                  <  SRR4302533.5583485/94‑1 (MQ=60)
                                                               CTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCC                                >  SRR4302533.6145058/1‑94 (MQ=60)
                                                               CTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCC                                <  SRR4302533.6269512/94‑1 (MQ=60)
                                                               CTCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCC                                >  SRR4302533.150955/1‑94 (MQ=60)
                                                                TCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCT                               <  SRR4302533.1732810/94‑1 (MQ=60)
                                                                TCTGGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCT                               <  SRR4302533.3115602/94‑1 (MQ=60)
                                                                   GGCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCC                            >  SRR4302533.5280530/1‑94 (MQ=60)
                                                                    GCCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCA                           >  SRR4302533.1957984/1‑94 (MQ=60)
                                                                     CCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCAC                          >  SRR4302533.1123571/1‑94 (MQ=60)
                                                                     CCAGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCAC                          >  SRR4302533.2334042/1‑94 (MQ=60)
                                                                      CAGTACGCTTGGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGCCCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACA                         <  SRR4302533.3363199/94‑1 (MQ=60)
                                                                       AGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAG                        >  SRR4302533.4639876/1‑94 (MQ=60)
                                                                       AGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAG                        >  SRR4302533.1732153/1‑94 (MQ=60)
                                                                       AGTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAG                        <  SRR4302533.3255978/94‑1 (MQ=60)
                                                                        GTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGG                       >  SRR4302533.6106102/1‑94 (MQ=60)
                                                                        GTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGG                       >  SRR4302533.5401657/1‑94 (MQ=60)
                                                                        GTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGG                       >  SRR4302533.2135964/1‑94 (MQ=60)
                                                                        GTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGG                       <  SRR4302533.5291879/94‑1 (MQ=60)
                                                                        GTACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGG                       <  SRR4302533.6059657/94‑1 (MQ=60)
                                                                          ACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTG                     >  SRR4302533.1361603/1‑94 (MQ=60)
                                                                          ACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTG                     >  SRR4302533.270598/1‑94 (MQ=60)
                                                                          ACGCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTG                     >  SRR4302533.2359704/1‑94 (MQ=60)
                                                                            GCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCT                   <  SRR4302533.340991/94‑1 (MQ=60)
                                                                            GCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCT                   <  SRR4302533.751265/94‑1 (MQ=60)
                                                                            GCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCT                   >  SRR4302533.4160218/1‑94 (MQ=60)
                                                                            GCTTTGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCT                   <  SRR4302533.5252463/94‑1 (MQ=60)
                                                                                TGTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATA               <  SRR4302533.6206629/94‑1 (MQ=60)
                                                                                 GTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATAT              <  SRR4302533.5139358/94‑1 (MQ=60)
                                                                                 GTTGGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATAT              <  SRR4302533.2386484/94‑1 (MQ=60)
                                                                                    GGCCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAA           >  SRR4302533.5434121/1‑94 (MQ=60)
                                                                                      CCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACG         >  SRR4302533.397453/1‑94 (MQ=60)
                                                                                      CCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACG         <  SRR4302533.4047084/94‑1 (MQ=60)
                                                                                      CCTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACG         >  SRR4302533.349640/1‑94 (MQ=60)
                                                                                       CTCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGC        >  SRR4302533.5038176/1‑94 (MQ=60)
                                                                                        TCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCT       <  SRR4302533.2880846/94‑1 (MQ=60)
                                                                                        TCCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCAACAGGTGCTGATATGAACGCT       >  SRR4302533.3523814/1‑94 (MQ=60)
                                                                                         CCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTG      <  SRR4302533.3426869/94‑1 (MQ=60)
                                                                                         CCAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTG      >  SRR4302533.3776182/1‑94 (MQ=60)
                                                                                          CAGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGT     >  SRR4302533.1010145/1‑94 (MQ=60)
                                                                                           AGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTT    >  SRR4302533.4823748/1‑94 (MQ=60)
                                                                                           AGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTT    >  SRR4302533.3446933/1‑94 (MQ=60)
                                                                                           AGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTT    >  SRR4302533.1325687/1‑94 (MQ=60)
                                                                                           AGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTT    >  SRR4302533.2363213/1‑94 (MQ=60)
                                                                                           AGTAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTT    >  SRR4302533.2728524/1‑94 (MQ=60)
                                                                                             TAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTTCC  <  SRR4302533.4898132/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTCAGCCGTGCTAAAGAATACGGACCAGCACCCAACGGATGCCAGTCCACACAATTAACGTAACTCTGGCCAGTACGCTTTGTTGGCCTCCAGCAACTCATCCAGAATAGCTTTGGCGACCGAGGCGCTCGGTACCGTTTTCGACAACGTAATCGCCTGCCACAGGTGCTGATATGAACGCTGTTCC  >  NC_000913/3858746‑3858932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑