Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,870,631 Δ1 bp coding (610/1764 nt) dgoA ← 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,870,6300C.100.0% 1121.5 / NA 242coding (611/1764 nt)dgoA2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (133/109);  total (133/109)

Only 100 of 263 total aligned reads displayed.

CCCAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCACCTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAA  >  NC_000913/3870538‑3870718
                                                                                            |                                                                                          
cccAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCAc                                                                                            <  1:5960984/93‑1 (MQ=255)
cccAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCAc                                                                                            >  1:5141073/1‑93 (MQ=255)
cccAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCAc                                                                                            >  2:4619975/1‑93 (MQ=255)
 ccAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCAct                                                                                           >  2:3671370/1‑92 (MQ=255)
 ccAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCAct                                                                                           >  1:2047108/1‑92 (MQ=255)
      cGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCctc                                                                                     <  1:6175020/93‑1 (MQ=255)
      cGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCctc                                                                                     <  2:2616221/93‑1 (MQ=255)
        aCCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCtctc                                                                                   >  2:2052598/1‑93 (MQ=255)
         ccACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCg                                                                                  >  1:3903130/1‑93 (MQ=255)
          cACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGa                                                                                 <  1:294290/93‑1 (MQ=255)
          cACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGa                                                                                 <  1:2772132/93‑1 (MQ=255)
          cACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGa                                                                                 <  2:4414235/93‑1 (MQ=255)
           aCGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGAt                                                                                <  1:1898606/93‑1 (MQ=255)
           aCGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGAt                                                                                >  2:1389725/1‑93 (MQ=255)
           aCGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGAt                                                                                <  2:281267/93‑1 (MQ=255)
             gCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATAc                                                                              <  1:2810638/93‑1 (MQ=255)
             gCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATAc                                                                              >  1:4662738/1‑93 (MQ=255)
              ccTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTTCA‑CTGCCTCTCGATACg                                                                             >  2:3744993/1‑93 (MQ=255)
                 tCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCt                                                                          >  1:3236767/1‑93 (MQ=255)
                   aTCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTa                                                                        >  1:6269189/1‑93 (MQ=255)
                   aTCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTa                                                                        >  2:4278392/1‑93 (MQ=255)
                   aTCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTa                                                                        >  1:2415288/1‑93 (MQ=255)
                   aTCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTa                                                                        >  2:5767620/1‑93 (MQ=255)
                    tCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTaa                                                                       <  2:3485906/93‑1 (MQ=255)
                     cgctttCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAAc                                                                      <  1:800144/90‑1 (MQ=255)
                       gTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACaa                                                                    >  1:1430207/1‑93 (MQ=255)
                       gTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACaa                                                                    >  1:4185102/1‑93 (MQ=255)
                        tttCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACaaa                                                                   <  2:5732980/93‑1 (MQ=255)
                        tttCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACaaa                                                                   >  2:2214303/1‑93 (MQ=255)
                        tttCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACaaa                                                                   >  1:4252864/1‑93 (MQ=255)
                         ttCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAt                                                                  <  2:2911762/93‑1 (MQ=255)
                         ttCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAt                                                                  <  1:450681/93‑1 (MQ=255)
                          tCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtg                                                                 >  1:2560945/1‑93 (MQ=255)
                          tCAATTTTCAGGAACATCCAGCGGGGAGGTAAACAATACGCGGGAATTTTGGTGATCTTCATTGCA‑CTGCCTCTCGATACGCCCTAACaaaaa                                                                 >  2:4049480/1‑91 (MQ=255)
                            aaTTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtgct                                                               <  1:953977/93‑1 (MQ=255)
                            aaTTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtgct                                                               >  1:271878/1‑93 (MQ=255)
                              ttttCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtgctg‑c                                                            >  2:3848396/1‑93 (MQ=255)
                               tttCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtgctg‑ct                                                           >  2:6186390/1‑93 (MQ=255)
                                 tCAGGAACATCCAGCGGGGCGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtgctg‑ctgc                                                         >  2:6129820/1‑93 (MQ=255)
                                 tCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtgctg‑ctgc                                                         >  1:3840513/1‑93 (MQ=255)
                                 tCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtgctg‑ctgc                                                         >  1:653146/1‑93 (MQ=255)
                                 tCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtgctg‑ctgc                                                         >  1:1238404/1‑93 (MQ=255)
                                 tCAGGAACATCCAGCGGGGAGGAAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGACTCTCGATACGCCTTAACAAAtgctg‑ctgc                                                         >  2:982112/1‑93 (MQ=255)
                                  cAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcc                                                        >  1:2232796/1‑93 (MQ=255)
                                   aGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAAtgctg‑ctgcgt                                                       >  1:5298602/1‑91 (MQ=255)
                                    ggAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcctg                                                      >  1:1282251/1‑93 (MQ=255)
                                    ggAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcctg                                                      >  2:197953/1‑93 (MQ=255)
                                    ggAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcctg                                                      >  2:1299589/1‑93 (MQ=255)
                                    ggAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcctg                                                      >  1:2102995/1‑93 (MQ=255)
                                     gAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcctgc                                                     <  2:5615238/93‑1 (MQ=255)
                                      aaCATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcctgct                                                    <  1:3148117/93‑1 (MQ=255)
                                        cATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcctgctgc                                                  <  2:643202/93‑1 (MQ=255)
                                        cATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcctgctgc                                                  <  1:3779478/93‑1 (MQ=255)
                                        cATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGctg‑ctgcctgctgc                                                  <  1:6069796/93‑1 (MQ=255)
                                          tCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTgcgc                                                >  2:5088405/1‑93 (MQ=255)
                                            cAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCgg                                              >  2:2558726/1‑93 (MQ=255)
                                              gCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTg                                            <  2:1717937/93‑1 (MQ=255)
                                                ggggAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTgcg                                          >  2:141959/1‑93 (MQ=255)
                                                   gAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGct‑c                                      >  1:4367017/1‑93 (MQ=255)
                                                    aGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGct‑ct                                     >  1:3980484/1‑93 (MQ=255)
                                                     ggTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTa                                    >  2:1572556/1‑93 (MQ=255)
                                                     ggTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTa                                    >  2:5881747/1‑93 (MQ=255)
                                                     ggTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTa                                    >  2:239901/1‑93 (MQ=255)
                                                       tAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACg                                  >  1:5891626/1‑93 (MQ=255)
                                                       tAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACg                                  >  2:1494333/1‑93 (MQ=255)
                                                          aCGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGAt                               <  1:5412952/93‑1 (MQ=255)
                                                          aCGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGAt                               <  1:1577625/93‑1 (MQ=255)
                                                           cGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGAtt                              <  1:1394343/93‑1 (MQ=255)
                                                           cGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGAtt                              <  2:5184326/93‑1 (MQ=255)
                                                           cGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGAtt                              >  2:780937/1‑93 (MQ=255)
                                                               aCGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGccc                          <  1:1805329/93‑1 (MQ=255)
                                                               aCGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGccc                          >  1:3665/1‑93 (MQ=255)
                                                               aCGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGccc                          <  2:848315/93‑1 (MQ=255)
                                                                 gTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCgg                        >  2:5461948/1‑93 (MQ=255)
                                                                 gTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAAAAAAT‑CTGCCTGCC‑GCCGCGCCGTTCGGTCCTACGGATTGCCCgc                        >  2:4879400/1‑92 (MQ=255)
                                                                  tGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGgc                       >  1:2336592/1‑93 (MQ=255)
                                                                  tGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGgc                       <  2:3369442/93‑1 (MQ=255)
                                                                    gTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGgcgc                     <  2:5946380/93‑1 (MQ=255)
                                                                     tAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGcgcg                    <  1:1735789/93‑1 (MQ=255)
                                                                       aTTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGAt                  >  2:5353536/1‑93 (MQ=255)
                                                                        ttttGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATa                 >  2:398339/1‑93 (MQ=255)
                                                                         tttGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATag                <  1:3630583/93‑1 (MQ=255)
                                                                          ttGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATaga               >  1:963870/1‑93 (MQ=255)
                                                                          ttGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATaga               <  1:5591195/93‑1 (MQ=255)
                                                                           tGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATagag              >  1:5762443/1‑93 (MQ=255)
                                                                            ggTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAgaga             <  1:2166174/93‑1 (MQ=255)
                                                                             gTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGAt            <  1:1122925/93‑1 (MQ=255)
                                                                               gATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCg          >  2:1660087/1‑93 (MQ=255)
                                                                                agtgtCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGc         <  2:4698631/89‑1 (MQ=255)
                                                                                aTTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGc         <  1:1000479/93‑1 (MQ=255)
                                                                                aTTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGc         <  1:1489671/93‑1 (MQ=255)
                                                                                aTTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGc         >  2:4540639/1‑93 (MQ=255)
                                                                                 ttttCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCt        >  1:3559860/1‑93 (MQ=255)
                                                                                  tttCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCTg       >  2:18719/1‑93 (MQ=255)
                                                                                   ttCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCTGc      <  1:3467558/93‑1 (MQ=255)
                                                                                   ttCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCTGc      <  2:2757827/93‑1 (MQ=255)
                                                                                    tCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCTGcc     >  2:600130/1‑93 (MQ=255)
                                                                                      aTTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTa   >  1:4929924/1‑93 (MQ=255)
                                                                                      aTTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTa   >  2:493896/1‑93 (MQ=255)
                                                                                       ttGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTaa  >  1:4839756/1‑93 (MQ=255)
                                                                                            |                                                                                          
CCCAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCACCTGCCTCTCGATACGCCTTAACAAATGCTG‑CTGCCTGCTGCGCGGTGCGCT‑CTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAA  >  NC_000913/3870538‑3870718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCCAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCACCTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCGC  >  NC_000913/3870538‑3870724
                                                                                             |                                                                                             
CCCAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCACT                                                                                               >  SRR4302533.2059732/1‑94 (MQ=60)
CCCAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCACT                                                                                               <  SRR4302533.5997047/94‑1 (MQ=60)
   AACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCC                                                                                           >  SRR4302533.3901330/1‑94 (MQ=60)
   AACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCC                                                                                           <  SRR4302533.1360244/94‑1 (MQ=60)
      CGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCT                                                                                        <  SRR4302533.6212125/94‑1 (MQ=60)
       GACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTC                                                                                       >  SRR4302533.673152/1‑94 (MQ=60)
        ACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCG                                                                                      <  SRR4302533.1261440/94‑1 (MQ=60)
        ACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCG                                                                                      >  SRR4302533.3926970/1‑94 (MQ=60)
         CCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGA                                                                                     >  SRR4302533.1944402/1‑94 (MQ=60)
          CACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGAT                                                                                    <  SRR4302533.5213727/94‑1 (MQ=60)
          CACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGAT                                                                                    >  SRR4302533.1174658/1‑94 (MQ=60)
          CACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGAT                                                                                    <  SRR4302533.296087/94‑1 (MQ=60)
          CACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGAT                                                                                    <  SRR4302533.2789141/94‑1 (MQ=60)
           ACGCCTTCATCGGTTTCAATTTTCAGGAACATCTAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATA                                                                                   <  SRR4302533.130635/94‑1 (MQ=60)
           ACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATA                                                                                   <  SRR4302533.6253002/94‑1 (MQ=60)
           ACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATA                                                                                   <  SRR4302533.1910197/94‑1 (MQ=60)
            CGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATAC                                                                                  >  SRR4302533.4690993/1‑94 (MQ=60)
            CGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATAC                                                                                  >  SRR4302533.206303/1‑94 (MQ=60)
             GCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACG                                                                                 <  SRR4302533.2827934/94‑1 (MQ=60)
             GCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACG                                                                                 <  SRR4302533.2827935/94‑1 (MQ=60)
              CCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGC                                                                                >  SRR4302533.1072487/1‑94 (MQ=60)
              CCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGC                                                                                >  SRR4302533.654249/1‑94 (MQ=60)
               CTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCC                                                                               >  SRR4302533.6090590/1‑94 (MQ=60)
                TTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCT                                                                              >  SRR4302533.3256713/1‑94 (MQ=60)
                  CATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTA                                                                            >  SRR4302533.6306647/1‑94 (MQ=60)
                  CATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTA                                                                            >  SRR4302533.2430209/1‑94 (MQ=60)
                    TCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAAC                                                                          <  SRR4302533.2660348/94‑1 (MQ=60)
                     CGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACA                                                                         >  SRR4302533.3819331/1‑94 (MQ=60)
                     CGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACA                                                                         <  SRR4302533.3656223/94‑1 (MQ=60)
                     CGCTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACA                                                                         <  SRR4302533.804850/94‑1 (MQ=60)
                      GGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAA                                                                        >  SRR4302533.4210442/1‑94 (MQ=60)
                      GGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAA                                                                        >  SRR4302533.1438851/1‑94 (MQ=60)
                       GTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAA                                                                       >  SRR4302533.4278516/1‑94 (MQ=60)
                       GTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAA                                                                       >  SRR4302533.2724520/1‑94 (MQ=60)
                         TTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATG                                                                     >  SRR4302533.2576716/1‑94 (MQ=60)
                         TTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATG                                                                     <  SRR4302533.453379/94‑1 (MQ=60)
                         TTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATG                                                                     <  SRR4302533.2087126/94‑1 (MQ=60)
                         TTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATG                                                                     >  SRR4302533.879070/1‑94 (MQ=60)
                         TTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATG                                                                     <  SRR4302533.1742421/94‑1 (MQ=60)
                           CAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCT                                                                   >  SRR4302533.273533/1‑94 (MQ=60)
                           CAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCT                                                                   <  SRR4302533.1436466/94‑1 (MQ=60)
                           CAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCT                                                                   <  SRR4302533.847391/94‑1 (MQ=60)
                           CAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCT                                                                   >  SRR4302533.2810825/1‑94 (MQ=60)
                            AATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG                                                                  <  SRR4302533.6120867/94‑1 (MQ=60)
                            AATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTG                                                                  <  SRR4302533.959581/94‑1 (MQ=60)
                               TTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTG                                                               <  SRR4302533.4559261/94‑1 (MQ=60)
                                TTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGC                                                              >  SRR4302533.3863975/1‑94 (MQ=60)
                                TTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGC                                                              >  SRR4302533.657003/1‑94 (MQ=60)
                                TTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGC                                                              >  SRR4302533.1245804/1‑94 (MQ=60)
                                TTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGC                                                              <  SRR4302533.3654127/94‑1 (MQ=60)
                                 TCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCC                                                             >  SRR4302533.2246574/1‑94 (MQ=60)
                                  CAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCGT                                                            >  SRR4302533.5330343/1‑94 (MQ=60)
                                   AGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTG                                                           >  SRR4302533.2115962/1‑94 (MQ=60)
                                   AGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTG                                                           >  SRR4302533.1289967/1‑94 (MQ=60)
                                     GAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCT                                                         >  SRR4302533.2382546/1‑94 (MQ=60)
                                     GAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCT                                                         <  SRR4302533.2326903/94‑1 (MQ=60)
                                      AACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTG                                                        <  SRR4302533.3167471/94‑1 (MQ=60)
                                      AACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTG                                                        <  SRR4302533.334049/94‑1 (MQ=60)
                                        CATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCG                                                      <  SRR4302533.5717493/94‑1 (MQ=60)
                                        CATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCG                                                      <  SRR4302533.5929739/94‑1 (MQ=60)
                                        CATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCG                                                      <  SRR4302533.3802631/94‑1 (MQ=60)
                                        CATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCG                                                      <  SRR4302533.6106522/94‑1 (MQ=60)
                                         ATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGC                                                     >  SRR4302533.3995364/1‑94 (MQ=60)
                                         ATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGC                                                     >  SRR4302533.360846/1‑94 (MQ=60)
                                         ATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGC                                                     <  SRR4302533.964627/94‑1 (MQ=60)
                                         ATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGC                                                     >  SRR4302533.6254145/1‑94 (MQ=60)
                                            CAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGT                                                  <  SRR4302533.1581882/94‑1 (MQ=60)
                                             AGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTG                                                 >  SRR4302533.1635496/1‑94 (MQ=60)
                                                  GGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTC                                            >  SRR4302533.4393381/1‑94 (MQ=60)
                                                   GAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCT                                           >  SRR4302533.4004720/1‑94 (MQ=60)
                                                      GTAAACGATATGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACG                                        >  SRR4302533.3223447/1‑94 (MQ=60)
                                                      GTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACG                                        >  SRR4302533.5927214/1‑94 (MQ=60)
                                                      GTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACG                                        <  SRR4302533.1776112/94‑1 (MQ=60)
                                                       TAAACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGG                                       <  SRR4302533.2204177/94‑1 (MQ=60)
                                                         AACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGAT                                     <  SRR4302533.4510783/94‑1 (MQ=60)
                                                         AACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGAT                                     <  SRR4302533.2783316/94‑1 (MQ=60)
                                                         AACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGAT                                     <  SRR4302533.1897935/94‑1 (MQ=60)
                                                          ACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATT                                    <  SRR4302533.6145993/94‑1 (MQ=60)
                                                          ACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATT                                    <  SRR4302533.4851311/94‑1 (MQ=60)
                                                          ACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATT                                    <  SRR4302533.1587124/94‑1 (MQ=60)
                                                          ACGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATT                                    <  SRR4302533.5445500/94‑1 (MQ=60)
                                                           CGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTG                                   <  SRR4302533.1402745/94‑1 (MQ=60)
                                                           CGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTG                                   >  SRR4302533.2890716/1‑94 (MQ=60)
                                                           CGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTG                                   >  SRR4302533.3853709/1‑94 (MQ=60)
                                                           CGATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTG                                   <  SRR4302533.3688206/94‑1 (MQ=60)
                                                             ATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCC                                 >  SRR4302533.5140794/1‑94 (MQ=60)
                                                             ATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCC                                 >  SRR4302533.3436916/1‑94 (MQ=60)
                                                             ATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCC                                 >  SRR4302533.5769154/1‑94 (MQ=60)
                                                             ATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCC                                 >  SRR4302533.4956564/1‑94 (MQ=60)
                                                             ATACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCC                                 >  SRR4302533.5994175/1‑94 (MQ=60)
                                                              TACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCC                                >  SRR4302533.3697/1‑94 (MQ=60)
                                                              TACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCC                                >  SRR4302533.3550169/1‑94 (MQ=60)
                                                               ACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCG                               >  SRR4302533.4497679/1‑94 (MQ=60)
                                                               ACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCG                               <  SRR4302533.1175066/94‑1 (MQ=60)
                                                               ACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCG                               <  SRR4302533.1816318/94‑1 (MQ=60)
                                                               ACGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCG                               <  SRR4302533.541496/94‑1 (MQ=60)
                                                                CGTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGG                              >  SRR4302533.28215/1‑94 (MQ=60)
                                                                 GTGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGC                             >  SRR4302533.2351054/1‑94 (MQ=60)
                                                                  TGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCG                            <  SRR4302533.4033979/94‑1 (MQ=60)
                                                                  TGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCG                            >  SRR4302533.5475950/1‑94 (MQ=60)
                                                                  TGGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCG                            >  SRR4302533.3132887/1‑94 (MQ=60)
                                                                   GGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGC                           >  SRR4302533.67932/1‑94 (MQ=60)
                                                                   GGTAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGC                           >  SRR4302533.2171556/1‑94 (MQ=60)
                                                                     TAATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGA                         <  SRR4302533.1746320/94‑1 (MQ=60)
                                                                      AATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGAT                        >  SRR4302533.4017099/1‑94 (MQ=60)
                                                                       ATTTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATA                       >  SRR4302533.586732/1‑94 (MQ=60)
                                                                         TTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGA                     >  SRR4302533.969532/1‑94 (MQ=60)
                                                                         TTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGA                     <  SRR4302533.187495/94‑1 (MQ=60)
                                                                         TTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGA                     >  SRR4302533.358998/1‑94 (MQ=60)
                                                                         TTTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGA                     <  SRR4302533.3652920/94‑1 (MQ=60)
                                                                          TTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAG                    <  SRR4302533.5624971/94‑1 (MQ=60)
                                                                          TTGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAG                    >  SRR4302533.5797221/1‑94 (MQ=60)
                                                                           TGGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAGCAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGA                   <  SRR4302533.2427917/94‑1 (MQ=60)
                                                                            GGTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGAT                  <  SRR4302533.2179499/94‑1 (MQ=60)
                                                                             GTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATC                 <  SRR4302533.1129590/94‑1 (MQ=60)
                                                                             GTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATC                 <  SRR4302533.4734416/94‑1 (MQ=60)
                                                                             GTGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATC                 >  SRR4302533.2310839/1‑94 (MQ=60)
                                                                              TGATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCG                >  SRR4302533.5102380/1‑94 (MQ=60)
                                                                                ATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCT              >  SRR4302533.3581794/1‑94 (MQ=60)
                                                                                ATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCT              <  SRR4302533.1000353/94‑1 (MQ=60)
                                                                                ATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCT              <  SRR4302533.1006318/94‑1 (MQ=60)
                                                                                ATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCT              <  SRR4302533.1498656/94‑1 (MQ=60)
                                                                                ATTTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCT              <  SRR4302533.3993303/94‑1 (MQ=60)
                                                                                  TTTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGC            <  SRR4302533.1555649/94‑1 (MQ=60)
                                                                                   TTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCC           <  SRR4302533.3488960/94‑1 (MQ=60)
                                                                                   TTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCC           >  SRR4302533.2435778/1‑94 (MQ=60)
                                                                                   TTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCC           <  SRR4302533.4222824/94‑1 (MQ=60)
                                                                                   TTCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCC           >  SRR4302533.4328928/1‑94 (MQ=60)
                                                                                    TCATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCT          <  SRR4302533.4314500/94‑1 (MQ=60)
                                                                                     CATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTA         >  SRR4302533.5328972/1‑94 (MQ=60)
                                                                                     CATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTA         >  SRR4302533.4959778/1‑94 (MQ=60)
                                                                                      ATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAA        >  SRR4302533.4869090/1‑94 (MQ=60)
                                                                                      ATTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAA        >  SRR4302533.5571835/1‑94 (MQ=60)
                                                                                       TTGCA‑CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAG       <  SRR4302533.1431312/94‑1 (MQ=60)
                                                                                           caCTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCC    <  SRR4302533.3894442/92‑1 (MQ=60)
                                                                                           caCTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCC    <  SRR4302533.6164081/92‑1 (MQ=60)
                                                                                           caCTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCC    <  SRR4302533.617728/92‑1 (MQ=60)
                                                                                           caCTGCCTCTCGAGACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCC    <  SRR4302533.3624712/92‑1 (MQ=60)
                                                                                            CCTTCTTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCG   <  SRR4302533.2007793/94‑1 (MQ=60)
                                                                                            ACTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCG   >  SRR4302533.5734615/1‑94 (MQ=60)
                                                                                            ACTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCG   >  SRR4302533.2654417/1‑94 (MQ=60)
                                                                                            ACTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCG   <  SRR4302533.5189529/94‑1 (MQ=60)
                                                                                             CTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCGC  >  SRR4302533.2460967/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCCAACCGACCACGCCTTCATCGGTTTCAATTTTCAGGAACATCCAGCGGGGAGGTAAACGATACGTGGTAATTTTGGTGATTTTCATTGCACCTGCCTCTCGATACGCCTTAACAAATGCTGCTGCCTGCTGCGCGGTGCGCTCTACGGATTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCGC  >  NC_000913/3870538‑3870724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑